data_N2D
# 
_chem_comp.id                                    N2D 
_chem_comp.name                                  "N-[2-chloro-5-(1-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-6-oxo-1,6-dihydropyridazin-3-yl)benzyl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H34 Cl2 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        645.578 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3MPF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2D C1   C1   C  0 1 Y N N 13.635 -19.070 -39.625 9.519  -0.368 0.020  C1   N2D 1  
N2D C2   C2   C  0 1 Y N N 12.825 -18.313 -40.472 8.196  -0.049 -0.222 C2   N2D 2  
N2D CL2  CL2  CL 0 0 N N N 15.339 -19.359 -40.078 10.776 0.711  -0.497 CL2  N2D 3  
N2D C3   C3   C  0 1 Y N N 11.497 -18.084 -40.128 7.192  -0.912 0.191  C3   N2D 4  
N2D CL3  CL3  CL 0 0 N N N 16.415 -6.898  -42.517 -8.531 0.106  0.656  CL3  N2D 5  
N2D C4   C4   C  0 1 Y N N 10.986 -18.658 -38.852 7.521  -2.098 0.849  C4   N2D 6  
N2D C5   C5   C  0 1 Y N N 11.834 -19.406 -38.042 8.851  -2.410 1.088  C5   N2D 7  
N2D C6   C6   C  0 1 Y N N 13.154 -19.611 -38.431 9.844  -1.543 0.677  C6   N2D 8  
N2D N13  N13  N  0 1 N N N 9.704  -18.301 -38.749 6.321  -2.746 1.136  N13  N2D 9  
N2D C14  C14  C  0 1 N N N 9.456  -17.583 -39.842 5.309  -1.988 0.674  C14  N2D 10 
N2D N15  N15  N  0 1 N N N 10.471 -17.425 -40.689 5.802  -0.875 0.098  N15  N2D 11 
N2D C22  C22  C  0 1 N N N 8.773  -18.640 -37.644 6.184  -4.032 1.823  C22  N2D 12 
N2D O24  O24  O  0 1 N N N 8.300  -17.072 -40.082 4.128  -2.266 0.762  O24  N2D 13 
N2D C26  C26  C  0 1 N N N 10.417 -16.659 -41.963 5.012  0.193  -0.519 C26  N2D 14 
N2D C28  C28  C  0 1 N N N 11.463 -15.561 -42.001 4.187  -0.383 -1.673 C28  N2D 15 
N2D C29  C29  C  0 1 N N N 11.165 -14.628 -43.164 3.319  0.725  -2.275 C29  N2D 16 
N2D N30  N30  N  0 1 N N N 10.787 -15.371 -44.374 2.432  1.270  -1.240 N30  N2D 17 
N2D C31  C31  C  0 1 N N N 10.398 -16.786 -44.459 3.202  1.871  -0.143 C31  N2D 18 
N2D C32  C32  C  0 1 N N N 10.665 -17.542 -43.163 4.067  0.798  0.522  C32  N2D 19 
N2D C39  C39  C  0 1 N N N 10.756 -14.617 -45.618 1.487  2.238  -1.813 C39  N2D 20 
N2D C41  C41  C  0 1 N N N 12.163 -14.658 -46.202 0.427  2.595  -0.769 C41  N2D 21 
N2D C43  C43  C  0 1 N N N 12.334 -13.598 -47.287 -0.557 3.604  -1.365 C43  N2D 22 
N2D N45  N45  N  0 1 N N N 13.698 -13.074 -47.235 -1.572 3.946  -0.366 N45  N2D 23 
N2D N47  N47  N  0 1 N N N 13.985 -12.017 -46.358 -2.648 3.249  -0.305 N47  N2D 24 
N2D C48  C48  C  0 1 N N N 15.235 -11.517 -46.279 -3.598 3.499  0.565  C48  N2D 25 
N2D C49  C49  C  0 1 N N N 16.258 -12.039 -47.076 -3.461 4.568  1.481  C49  N2D 26 
N2D C50  C50  C  0 1 N N N 16.005 -13.088 -47.952 -2.324 5.320  1.430  C50  N2D 27 
N2D C51  C51  C  0 1 N N N 14.726 -13.618 -48.039 -1.349 4.979  0.467  C51  N2D 28 
N2D C58  C58  C  0 1 Y N N 15.525 -10.393 -45.351 -4.820 2.659  0.587  C58  N2D 29 
N2D C60  C60  C  0 1 Y N N 14.589 -9.369  -45.178 -5.831 2.921  1.509  C60  N2D 30 
N2D C61  C61  C  0 1 Y N N 14.850 -8.302  -44.319 -6.967 2.136  1.526  C61  N2D 31 
N2D C62  C62  C  0 1 Y N N 16.053 -8.254  -43.622 -7.101 1.090  0.629  C62  N2D 32 
N2D C63  C63  C  0 1 Y N N 17.046 -9.338  -43.808 -6.098 0.826  -0.288 C63  N2D 33 
N2D C64  C64  C  0 1 Y N N 16.741 -10.377 -44.671 -4.963 1.608  -0.317 C64  N2D 34 
N2D O71  O71  O  0 1 N N N 14.505 -14.561 -48.830 -0.313 5.621  0.388  O71  N2D 35 
N2D C75  C75  C  0 1 N N N 18.369 -9.343  -43.082 -6.251 -0.315 -1.261 C75  N2D 36 
N2D N77  N77  N  0 1 N N N 18.323 -10.342 -42.028 -6.037 -1.585 -0.562 N77  N2D 37 
N2D C79  C79  C  0 1 N N N 19.239 -11.300 -41.887 -6.124 -2.749 -1.236 C79  N2D 38 
N2D C81  C81  C  0 1 Y N N 19.134 -12.246 -40.724 -5.909 -4.030 -0.531 C81  N2D 39 
N2D C83  C83  C  0 1 Y N N 20.268 -12.543 -39.968 -5.998 -5.237 -1.226 C83  N2D 40 
N2D C84  C84  C  0 1 Y N N 20.182 -13.417 -38.887 -5.796 -6.429 -0.562 C84  N2D 41 
N2D C85  C85  C  0 1 Y N N 18.960 -13.998 -38.558 -5.505 -6.430 0.791  C85  N2D 42 
N2D C86  C86  C  0 1 Y N N 17.827 -13.703 -39.313 -5.414 -5.237 1.486  C86  N2D 43 
N2D C87  C87  C  0 1 Y N N 17.912 -12.827 -40.392 -5.609 -4.038 0.832  C87  N2D 44 
N2D O94  O94  O  0 1 N N N 20.172 -11.424 -42.666 -6.380 -2.745 -2.425 O94  N2D 45 
N2D H2   H2   H  0 1 N N N 13.227 -17.907 -41.389 7.945  0.870  -0.731 H2   N2D 46 
N2D H5   H5   H  0 1 N N N 11.470 -19.825 -37.116 9.109  -3.327 1.597  H5   N2D 47 
N2D H6   H6   H  0 1 N N N 13.812 -20.194 -37.804 10.880 -1.786 0.863  H6   N2D 48 
N2D H22  H22  H  0 1 N N N 7.785  -18.200 -37.848 6.103  -3.864 2.897  H22  N2D 49 
N2D H22A H22A H  0 0 N N N 8.679  -19.733 -37.567 5.288  -4.541 1.467  H22A N2D 50 
N2D H22B H22B H  0 0 N N N 9.165  -18.238 -36.698 7.059  -4.649 1.617  H22B N2D 51 
N2D H26  H26  H  0 1 N N N 9.404  -16.231 -42.005 5.680  0.967  -0.899 H26  N2D 52 
N2D H28  H28  H  0 1 N N N 11.437 -14.995 -41.058 4.857  -0.776 -2.438 H28  N2D 53 
N2D H28A H28A H  0 0 N N N 12.460 -16.006 -42.132 3.549  -1.183 -1.300 H28A N2D 54 
N2D H29  H29  H  0 1 N N N 10.333 -13.966 -42.882 3.958  1.519  -2.661 H29  N2D 55 
N2D H29A H29A H  0 0 N N N 12.066 -14.035 -43.381 2.720  0.315  -3.088 H29A N2D 56 
N2D H31  H31  H  0 1 N N N 9.321  -16.839 -44.678 3.842  2.659  -0.539 H31  N2D 57 
N2D H31A H31A H  0 0 N N N 10.978 -17.259 -45.265 2.517  2.293  0.592  H31A N2D 58 
N2D H32  H32  H  0 1 N N N 11.713 -17.875 -43.152 3.426  0.015  0.930  H32  N2D 59 
N2D H32A H32A H  0 0 N N N 9.994  -18.413 -43.112 4.650  1.247  1.326  H32A N2D 60 
N2D H39  H39  H  0 1 N N N 10.039 -15.068 -46.319 2.025  3.140  -2.107 H39  N2D 61 
N2D H39A H39A H  0 0 N N N 10.453 -13.577 -45.426 1.004  1.802  -2.687 H39A N2D 62 
N2D H41  H41  H  0 1 N N N 12.890 -14.468 -45.398 -0.111 1.694  -0.475 H41  N2D 63 
N2D H41A H41A H  0 0 N N N 12.340 -15.651 -46.641 0.910  3.032  0.105  H41A N2D 64 
N2D H43  H43  H  0 1 N N N 12.149 -14.047 -48.274 -0.019 4.505  -1.660 H43  N2D 65 
N2D H43A H43A H  0 0 N N N 11.618 -12.780 -47.119 -1.040 3.168  -2.240 H43A N2D 66 
N2D H49  H49  H  0 1 N N N 17.253 -11.624 -47.011 -4.236 4.784  2.201  H49  N2D 67 
N2D H50  H50  H  0 1 N N N 16.801 -13.489 -48.562 -2.172 6.147  2.108  H50  N2D 68 
N2D H60  H60  H  0 1 N N N 13.653 -9.405  -45.716 -5.727 3.736  2.210  H60  N2D 69 
N2D H61  H61  H  0 1 N N N 14.120 -7.515  -44.195 -7.751 2.338  2.240  H61  N2D 70 
N2D H64  H64  H  0 1 N N N 17.449 -11.179 -44.818 -4.183 1.404  -1.036 H64  N2D 71 
N2D H75  H75  H  0 1 N N N 19.177 -9.586  -43.787 -7.254 -0.299 -1.686 H75  N2D 72 
N2D H75A H75A H  0 0 N N N 18.555 -8.351  -42.644 -5.516 -0.213 -2.060 H75A N2D 73 
N2D HN77 HN77 H  0 0 N N N 17.566 -10.309 -41.375 -5.833 -1.588 0.386  HN77 N2D 74 
N2D H83  H83  H  0 1 N N N 21.217 -12.093 -40.222 -6.226 -5.237 -2.282 H83  N2D 75 
N2D H84  H84  H  0 1 N N N 21.063 -13.644 -38.304 -5.865 -7.363 -1.099 H84  N2D 76 
N2D H85  H85  H  0 1 N N N 18.891 -14.675 -37.720 -5.347 -7.366 1.306  H85  N2D 77 
N2D H86  H86  H  0 1 N N N 16.879 -14.155 -39.061 -5.187 -5.244 2.542  H86  N2D 78 
N2D H87  H87  H  0 1 N N N 17.030 -12.598 -40.972 -5.534 -3.107 1.375  H87  N2D 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2D C1  C2   DOUB Y N 1  
N2D C1  CL2  SING N N 2  
N2D C1  C6   SING Y N 3  
N2D C2  C3   SING Y N 4  
N2D C3  C4   DOUB Y N 5  
N2D C3  N15  SING N N 6  
N2D CL3 C62  SING N N 7  
N2D C4  C5   SING Y N 8  
N2D C4  N13  SING N N 9  
N2D C5  C6   DOUB Y N 10 
N2D N13 C14  SING N N 11 
N2D N13 C22  SING N N 12 
N2D C14 N15  SING N N 13 
N2D C14 O24  DOUB N N 14 
N2D N15 C26  SING N N 15 
N2D C26 C28  SING N N 16 
N2D C26 C32  SING N N 17 
N2D C28 C29  SING N N 18 
N2D C29 N30  SING N N 19 
N2D N30 C31  SING N N 20 
N2D N30 C39  SING N N 21 
N2D C31 C32  SING N N 22 
N2D C39 C41  SING N N 23 
N2D C41 C43  SING N N 24 
N2D C43 N45  SING N N 25 
N2D N45 N47  SING N N 26 
N2D N45 C51  SING N N 27 
N2D N47 C48  DOUB N N 28 
N2D C48 C49  SING N N 29 
N2D C48 C58  SING N N 30 
N2D C49 C50  DOUB N N 31 
N2D C50 C51  SING N N 32 
N2D C51 O71  DOUB N N 33 
N2D C58 C60  DOUB Y N 34 
N2D C58 C64  SING Y N 35 
N2D C60 C61  SING Y N 36 
N2D C61 C62  DOUB Y N 37 
N2D C62 C63  SING Y N 38 
N2D C63 C64  DOUB Y N 39 
N2D C63 C75  SING N N 40 
N2D C75 N77  SING N N 41 
N2D N77 C79  SING N N 42 
N2D C79 C81  SING N N 43 
N2D C79 O94  DOUB N N 44 
N2D C81 C83  DOUB Y N 45 
N2D C81 C87  SING Y N 46 
N2D C83 C84  SING Y N 47 
N2D C84 C85  DOUB Y N 48 
N2D C85 C86  SING Y N 49 
N2D C86 C87  DOUB Y N 50 
N2D C2  H2   SING N N 51 
N2D C5  H5   SING N N 52 
N2D C6  H6   SING N N 53 
N2D C22 H22  SING N N 54 
N2D C22 H22A SING N N 55 
N2D C22 H22B SING N N 56 
N2D C26 H26  SING N N 57 
N2D C28 H28  SING N N 58 
N2D C28 H28A SING N N 59 
N2D C29 H29  SING N N 60 
N2D C29 H29A SING N N 61 
N2D C31 H31  SING N N 62 
N2D C31 H31A SING N N 63 
N2D C32 H32  SING N N 64 
N2D C32 H32A SING N N 65 
N2D C39 H39  SING N N 66 
N2D C39 H39A SING N N 67 
N2D C41 H41  SING N N 68 
N2D C41 H41A SING N N 69 
N2D C43 H43  SING N N 70 
N2D C43 H43A SING N N 71 
N2D C49 H49  SING N N 72 
N2D C50 H50  SING N N 73 
N2D C60 H60  SING N N 74 
N2D C61 H61  SING N N 75 
N2D C64 H64  SING N N 76 
N2D C75 H75  SING N N 77 
N2D C75 H75A SING N N 78 
N2D N77 HN77 SING N N 79 
N2D C83 H83  SING N N 80 
N2D C84 H84  SING N N 81 
N2D C85 H85  SING N N 82 
N2D C86 H86  SING N N 83 
N2D C87 H87  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2D SMILES           ACDLabs              12.01 "Clc1ccc2c(c1)N(C(=O)N2C)C6CCN(CCCN3N=C(C=CC3=O)c4ccc(Cl)c(c4)CNC(=O)c5ccccc5)CC6" 
N2D SMILES_CANONICAL CACTVS               3.370 "CN1C(=O)N(C2CCN(CCCN3N=C(C=CC3=O)c4ccc(Cl)c(CNC(=O)c5ccccc5)c4)CC2)c6cc(Cl)ccc16" 
N2D SMILES           CACTVS               3.370 "CN1C(=O)N(C2CCN(CCCN3N=C(C=CC3=O)c4ccc(Cl)c(CNC(=O)c5ccccc5)c4)CC2)c6cc(Cl)ccc16" 
N2D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C(=O)C=CC(=N4)c5ccc(c(c5)CNC(=O)c6ccccc6)Cl)Cl" 
N2D SMILES           "OpenEye OEToolkits" 1.7.0 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C(=O)C=CC(=N4)c5ccc(c(c5)CNC(=O)c6ccccc6)Cl)Cl" 
N2D InChI            InChI                1.03  
"InChI=1S/C34H34Cl2N6O3/c1-39-30-12-9-26(35)21-31(30)42(34(39)45)27-14-18-40(19-15-27)16-5-17-41-32(43)13-11-29(38-41)24-8-10-28(36)25(20-24)22-37-33(44)23-6-3-2-4-7-23/h2-4,6-13,20-21,27H,5,14-19,22H2,1H3,(H,37,44)" 
N2D InChIKey         InChI                1.03  ZJXORVFCSQEKCZ-UHFFFAOYSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N2D "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-chloro-5-(1-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-6-oxo-1,6-dihydropyridazin-3-yl)benzyl]benzamide" 
N2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[[2-chloro-5-[1-[3-[4-(6-chloro-3-methyl-2-oxo-benzimidazol-1-yl)piperidin-1-yl]propyl]-6-oxo-pyridazin-3-yl]phenyl]methyl]benzamide"                   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2D "Create component"     2010-04-29 RCSB 
N2D "Modify aromatic_flag" 2011-06-04 RCSB 
N2D "Modify descriptor"    2011-06-04 RCSB 
# 
