data_MVD
#

_chem_comp.id                                   MVD
_chem_comp.name                                 "2ALPHA-METHYL-1ALPHA,25-DIHYDROXY-VITAMIN D3"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H46 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL,2-METHYL-,(1A,2A,3B,5Z,7E)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-06-20
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       430.663
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MVD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "not provided"
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       2HB8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MVD  O3    O3    O  0  1  N  N  N  16.919  17.655  34.657  ?  ?  ?  O3    MVD   1  
MVD  O25   O25   O  0  1  N  N  N   4.466  26.498  34.756  ?  ?  ?  O25   MVD   2  
MVD  C1    C1    C  0  1  N  N  S  14.088  17.549  35.665  ?  ?  ?  C1    MVD   3  
MVD  C2    C2    C  0  1  N  N  S  14.813  16.391  34.841  ?  ?  ?  C2    MVD   4  
MVD  C3    C3    C  0  1  N  N  R  15.905  17.033  33.844  ?  ?  ?  C3    MVD   5  
MVD  C4    C4    C  0  1  N  N  N  15.286  18.148  32.892  ?  ?  ?  C4    MVD   6  
MVD  C5    C5    C  0  1  N  N  N  14.539  19.271  33.654  ?  ?  ?  C5    MVD   7  
MVD  C6    C6    C  0  1  N  N  N  14.745  20.655  33.458  ?  ?  ?  C6    MVD   8  
MVD  C7    C7    C  0  1  N  N  N  14.118  21.844  34.094  ?  ?  ?  C7    MVD   9  
MVD  C8    C8    C  0  1  N  N  N  13.859  23.011  33.581  ?  ?  ?  C8    MVD  10  
MVD  C9    C9    C  0  1  N  N  N  14.186  23.442  32.053  ?  ?  ?  C9    MVD  11  
MVD  C10   C10   C  0  1  N  N  N  13.491  18.673  34.707  ?  ?  ?  C10   MVD  12  
MVD  C11   C11   C  0  1  N  N  N  12.856  23.952  31.242  ?  ?  ?  C11   MVD  13  
MVD  C12   C12   C  0  1  N  N  N  11.974  24.960  32.156  ?  ?  ?  C12   MVD  14  
MVD  C13   C13   C  0  1  N  N  R  11.702  24.514  33.755  ?  ?  ?  C13   MVD  15  
MVD  C14   C14   C  0  1  N  N  S  13.179  24.136  34.390  ?  ?  ?  C14   MVD  16  
MVD  C15   C15   C  0  1  N  N  N  12.749  23.878  36.003  ?  ?  ?  C15   MVD  17  
MVD  C16   C16   C  0  1  N  N  N  11.511  24.855  36.178  ?  ?  ?  C16   MVD  18  
MVD  C17   C17   C  0  1  N  N  R  11.358  25.585  34.801  ?  ?  ?  C17   MVD  19  
MVD  C18   C18   C  0  1  N  N  N  10.662  23.160  33.545  ?  ?  ?  C18   MVD  20  
MVD  C19   C19   C  0  1  N  N  N  12.148  19.077  34.779  ?  ?  ?  C19   MVD  21  
MVD  C20   C20   C  0  1  N  N  R   9.867  26.218  34.490  ?  ?  ?  C20   MVD  22  
MVD  C21   C21   C  0  1  N  N  N   9.880  27.627  35.267  ?  ?  ?  C21   MVD  23  
MVD  C22   C22   C  0  1  N  N  N   8.574  25.553  35.111  ?  ?  ?  C22   MVD  24  
MVD  C23   C23   C  0  1  N  N  N   7.341  25.780  34.231  ?  ?  ?  C23   MVD  25  
MVD  C24   C24   C  0  1  N  N  N   6.216  24.888  34.348  ?  ?  ?  C24   MVD  26  
MVD  C25   C25   C  0  1  N  N  N   4.807  25.335  34.038  ?  ?  ?  C25   MVD  27  
MVD  C26   C26   C  0  1  N  N  N   4.678  25.571  32.550  ?  ?  ?  C26   MVD  28  
MVD  C27   C27   C  0  1  N  N  N   3.783  24.217  34.449  ?  ?  ?  C27   MVD  29  
MVD  O1    O1    O  0  1  N  N  N  13.045  16.952  36.503  ?  ?  ?  O1    MVD  30  
MVD  C28   C28   C  0  1  N  N  N  13.789  15.528  33.986  ?  ?  ?  C28   MVD  31  
MVD  HO3   HO3   H  0  1  N  N  N  17.702  17.792  34.137  ?  ?  ?  HO3   MVD  32  
MVD  H25   H25   H  0  1  N  N  N   4.389  26.289  35.680  ?  ?  ?  H25   MVD  33  
MVD  H1    H1    H  0  1  N  N  N  14.829  18.050  36.305  ?  ?  ?  H1    MVD  34  
MVD  H2    H2    H  0  1  N  N  N  15.295  15.727  35.573  ?  ?  ?  H2    MVD  35  
MVD  H3    H3    H  0  1  N  N  N  16.302  16.230  33.205  ?  ?  ?  H3    MVD  36  
MVD  H41   1H4   H  0  1  N  N  N  14.549  17.649  32.245  ?  ?  ?  H41   MVD  37  
MVD  H42   2H4   H  0  1  N  N  N  16.109  18.608  32.325  ?  ?  ?  H42   MVD  38  
MVD  H6    H6    H  0  1  N  N  N  15.491  20.892  32.714  ?  ?  ?  H6    MVD  39  
MVD  H7    H7    H  0  1  N  N  N  13.838  21.721  35.130  ?  ?  ?  H7    MVD  40  
MVD  H91   1H9   H  0  1  N  N  N  14.576  22.555  31.532  ?  ?  ?  H91   MVD  41  
MVD  H92   2H9   H  0  1  N  N  N  14.917  24.263  32.073  ?  ?  ?  H92   MVD  42  
MVD  H111  1H11  H  0  0  N  N  N  12.241  23.076  30.988  ?  ?  ?  H111  MVD  43  
MVD  H112  2H11  H  0  0  N  N  N  13.173  24.479  30.330  ?  ?  ?  H112  MVD  44  
MVD  H121  1H12  H  0  0  N  N  N  10.978  24.974  31.689  ?  ?  ?  H121  MVD  45  
MVD  H122  2H12  H  0  0  N  N  N  12.507  25.922  32.178  ?  ?  ?  H122  MVD  46  
MVD  H14   H14   H  0  1  N  N  N  13.987  24.881  34.337  ?  ?  ?  H14   MVD  47  
MVD  H151  1H15  H  0  0  N  N  N  13.567  24.073  36.712  ?  ?  ?  H151  MVD  48  
MVD  H152  2H15  H  0  0  N  N  N  12.477  22.830  36.194  ?  ?  ?  H152  MVD  49  
MVD  H161  1H16  H  0  0  N  N  N  11.668  25.568  37.001  ?  ?  ?  H161  MVD  50  
MVD  H162  2H16  H  0  0  N  N  N  10.599  24.291  36.425  ?  ?  ?  H162  MVD  51  
MVD  H17   H17   H  0  1  N  N  N  12.016  26.466  34.790  ?  ?  ?  H17   MVD  52  
MVD  H181  1H18  H  0  0  N  N  N   9.725  23.329  34.096  ?  ?  ?  H181  MVD  53  
MVD  H182  2H18  H  0  0  N  N  N  11.156  22.255  33.929  ?  ?  ?  H182  MVD  54  
MVD  H183  3H18  H  0  0  N  N  N  10.440  23.030  32.476  ?  ?  ?  H183  MVD  55  
MVD  H191  1H19  H  0  0  N  N  N  11.643  19.818  34.177  ?  ?  ?  H191  MVD  56  
MVD  H192  2H19  H  0  0  N  N  N  11.737  18.475  35.576  ?  ?  ?  H192  MVD  57  
MVD  H20   H20   H  0  1  N  N  N   9.770  26.145  33.397  ?  ?  ?  H20   MVD  58  
MVD  H211  1H21  H  0  0  N  N  N   8.985  28.205  34.993  ?  ?  ?  H211  MVD  59  
MVD  H212  2H21  H  0  0  N  N  N  10.781  28.192  34.986  ?  ?  ?  H212  MVD  60  
MVD  H213  3H21  H  0  0  N  N  N   9.883  27.448  36.352  ?  ?  ?  H213  MVD  61  
MVD  H221  1H22  H  0  0  N  N  N   8.387  26.015  36.091  ?  ?  ?  H221  MVD  62  
MVD  H222  2H22  H  0  0  N  N  N   8.745  24.471  35.207  ?  ?  ?  H222  MVD  63  
MVD  H231  1H23  H  0  0  N  N  N   7.709  25.611  33.208  ?  ?  ?  H231  MVD  64  
MVD  H232  2H23  H  0  0  N  N  N   6.966  26.784  34.478  ?  ?  ?  H232  MVD  65  
MVD  H241  1H24  H  0  0  N  N  N   6.174  24.695  35.430  ?  ?  ?  H241  MVD  66  
MVD  H242  2H24  H  0  0  N  N  N   6.422  24.061  33.652  ?  ?  ?  H242  MVD  67  
MVD  H261  1H26  H  0  0  N  N  N   3.752  25.104  32.184  ?  ?  ?  H261  MVD  68  
MVD  H262  2H26  H  0  0  N  N  N   5.542  25.128  32.032  ?  ?  ?  H262  MVD  69  
MVD  H263  3H26  H  0  0  N  N  N   4.647  26.652  32.351  ?  ?  ?  H263  MVD  70  
MVD  H271  1H27  H  0  0  N  N  N   2.863  24.685  34.829  ?  ?  ?  H271  MVD  71  
MVD  H272  2H27  H  0  0  N  N  N   4.225  23.586  35.234  ?  ?  ?  H272  MVD  72  
MVD  H273  3H27  H  0  0  N  N  N   3.544  23.598  33.572  ?  ?  ?  H273  MVD  73  
MVD  HO1   HO1   H  0  1  N  N  N  13.380  16.823  37.382  ?  ?  ?  HO1   MVD  74  
MVD  H281  1H28  H  0  0  N  N  N  14.260  14.575  33.704  ?  ?  ?  H281  MVD  75  
MVD  H282  2H28  H  0  0  N  N  N  13.511  16.083  33.078  ?  ?  ?  H282  MVD  76  
MVD  H283  3H28  H  0  0  N  N  N  12.888  15.329  34.584  ?  ?  ?  H283  MVD  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MVD  O3   C3    SING  N  N   1  
MVD  O3   HO3   SING  N  N   2  
MVD  O25  C25   SING  N  N   3  
MVD  O25  H25   SING  N  N   4  
MVD  C1   C2    SING  N  N   5  
MVD  C1   C10   SING  N  N   6  
MVD  C1   O1    SING  N  N   7  
MVD  C1   H1    SING  N  N   8  
MVD  C2   C3    SING  N  N   9  
MVD  C2   C28   SING  N  N  10  
MVD  C2   H2    SING  N  N  11  
MVD  C3   C4    SING  N  N  12  
MVD  C3   H3    SING  N  N  13  
MVD  C4   C5    SING  N  N  14  
MVD  C4   H41   SING  N  N  15  
MVD  C4   H42   SING  N  N  16  
MVD  C5   C6    DOUB  N  Z  17  
MVD  C5   C10   SING  N  N  18  
MVD  C6   C7    SING  N  N  19  
MVD  C6   H6    SING  N  N  20  
MVD  C7   C8    DOUB  N  E  21  
MVD  C7   H7    SING  N  N  22  
MVD  C8   C9    SING  N  N  23  
MVD  C8   C14   SING  N  N  24  
MVD  C9   C11   SING  N  N  25  
MVD  C9   H91   SING  N  N  26  
MVD  C9   H92   SING  N  N  27  
MVD  C10  C19   DOUB  N  N  28  
MVD  C11  C12   SING  N  N  29  
MVD  C11  H111  SING  N  N  30  
MVD  C11  H112  SING  N  N  31  
MVD  C12  C13   SING  N  N  32  
MVD  C12  H121  SING  N  N  33  
MVD  C12  H122  SING  N  N  34  
MVD  C13  C14   SING  N  N  35  
MVD  C13  C17   SING  N  N  36  
MVD  C13  C18   SING  N  N  37  
MVD  C14  C15   SING  N  N  38  
MVD  C14  H14   SING  N  N  39  
MVD  C15  C16   SING  N  N  40  
MVD  C15  H151  SING  N  N  41  
MVD  C15  H152  SING  N  N  42  
MVD  C16  C17   SING  N  N  43  
MVD  C16  H161  SING  N  N  44  
MVD  C16  H162  SING  N  N  45  
MVD  C17  C20   SING  N  N  46  
MVD  C17  H17   SING  N  N  47  
MVD  C18  H181  SING  N  N  48  
MVD  C18  H182  SING  N  N  49  
MVD  C18  H183  SING  N  N  50  
MVD  C19  H191  SING  N  N  51  
MVD  C19  H192  SING  N  N  52  
MVD  C20  C21   SING  N  N  53  
MVD  C20  C22   SING  N  N  54  
MVD  C20  H20   SING  N  N  55  
MVD  C21  H211  SING  N  N  56  
MVD  C21  H212  SING  N  N  57  
MVD  C21  H213  SING  N  N  58  
MVD  C22  C23   SING  N  N  59  
MVD  C22  H221  SING  N  N  60  
MVD  C22  H222  SING  N  N  61  
MVD  C23  C24   SING  N  N  62  
MVD  C23  H231  SING  N  N  63  
MVD  C23  H232  SING  N  N  64  
MVD  C24  C25   SING  N  N  65  
MVD  C24  H241  SING  N  N  66  
MVD  C24  H242  SING  N  N  67  
MVD  C25  C26   SING  N  N  68  
MVD  C25  C27   SING  N  N  69  
MVD  C26  H261  SING  N  N  70  
MVD  C26  H262  SING  N  N  71  
MVD  C26  H263  SING  N  N  72  
MVD  C27  H271  SING  N  N  73  
MVD  C27  H272  SING  N  N  74  
MVD  C27  H273  SING  N  N  75  
MVD  O1   HO1   SING  N  N  76  
MVD  C28  H281  SING  N  N  77  
MVD  C28  H282  SING  N  N  78  
MVD  C28  H283  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MVD  SMILES            ACDLabs               10.04  "OC3C(\C(=C/C=C1\CCCC2(C)C(C(C)CCCC(O)(C)C)CCC12)CC(O)C3C)=C"  
MVD  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](CCCC(C)(C)O)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)[C@H](C)[C@H](O)C3=C"  
MVD  SMILES            CACTVS                3.341  "C[CH](CCCC(C)(C)O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)[CH](C)[CH](O)C3=C"  
MVD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@@H](C/C(=C/C=C/2\CCC[C@]3([C@H]2CC[C@@H]3[C@H](C)CCCC(C)(C)O)C)/C(=C)[C@H]1O)O"  
MVD  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(CC(=CC=C2CCCC3(C2CCC3C(C)CCCC(C)(C)O)C)C(=C)C1O)O"  
MVD  InChI             InChI                 1.03   "InChI=1S/C28H46O3/c1-18(9-7-15-27(4,5)31)23-13-14-24-21(10-8-16-28(23,24)6)11-12-22-17-25(29)20(3)26(30)19(22)2/h11-12,18,20,23-26,29-31H,2,7-10,13-17H2,1,3-6H3/b21-11+,22-12-/t18-,20+,23-,24+,25-,26-,28-/m1/s1"  
MVD  InChIKey          InChI                 1.03   PSWKLSOBPNHZSY-GEMNOXHFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MVD  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,2S,3R,5Z,7E,14beta,17alpha)-2-methyl-9,10-secocholesta-5,7,10-triene-1,3,25-triol"  
MVD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1R,2S,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methyl-4-methylidene-cyclohexane-1,3-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MVD  "Create component"   2006-06-20  RCSB  
MVD  "Modify descriptor"  2011-06-04  RCSB  
MVD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MVD
_pdbx_chem_comp_synonyms.name        "9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL,2-METHYL-,(1A,2A,3B,5Z,7E)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
