data_M5D
#

_chem_comp.id                                   M5D
_chem_comp.name                                 "5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H23 N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-26
_chem_comp.pdbx_modified_date                   2019-12-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       365.432
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OCU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M5D  C1   C1   C  0  1  Y  N  N  36.205  14.221  33.567   2.869   0.301   0.099  C1   M5D   1  
M5D  C2   C2   C  0  1  Y  N  N  35.886  12.909  33.123   3.152   1.537  -0.510  C2   M5D   2  
M5D  C4   C3   C  0  1  Y  N  N  37.861  12.125  34.041   0.955   2.156  -0.280  C4   M5D   3  
M5D  C5   C4   C  0  1  Y  N  N  38.209  13.418  34.498   0.670   0.928   0.326  C5   M5D   4  
M5D  C8   C5   C  0  1  N  N  N  39.904  15.081  35.385  -1.523   1.771   0.458  C8   M5D   5  
M5D  C12  C6   C  0  1  N  N  N  41.708  13.118  35.942  -2.463  -0.966   0.766  C12  M5D   6  
M5D  C16  C7   C  0  1  N  N  R  43.326  14.412  32.646  -5.109  -1.329  -0.252  C16  M5D   7  
M5D  C18  C8   C  0  1  N  N  N  44.622  14.103  31.891  -5.293  -1.644  -1.738  C18  M5D   8  
M5D  C19  C9   C  0  1  N  N  R  44.535  15.343  32.788  -6.516  -1.426  -0.845  C19  M5D   9  
M5D  C21  C10  C  0  1  N  N  N  44.521  16.707  32.097  -7.353  -2.654  -0.481  C21  M5D  10  
M5D  C23  C11  C  0  1  N  N  N  34.692  12.583  32.408   4.483   1.835  -0.947  C23  M5D  11  
M5D  C30  C12  C  0  1  N  N  N  32.291  17.270  32.864   6.962  -2.473  -0.611  C30  M5D  12  
M5D  N3   N1   N  0  1  Y  N  N  36.736  11.917  33.386   2.178   2.430  -0.680  N3   M5D  13  
M5D  N6   N2   N  0  1  Y  N  N  37.346  14.408  34.239   1.631   0.032   0.501  N6   M5D  14  
M5D  N7   N3   N  0  1  N  N  N  39.407  13.690  35.192  -0.621   0.648   0.746  N7   M5D  15  
M5D  C9   C13  C  0  1  N  N  R  41.261  15.224  34.655  -2.890   1.500   1.095  C9   M5D  16  
M5D  N11  N4   N  0  1  N  N  N  42.035  13.963  34.771  -3.367   0.186   0.636  N11  M5D  17  
M5D  C13  C14  C  0  1  N  N  N  40.267  12.613  35.753  -1.112  -0.598   0.142  C13  M5D  18  
M5D  C14  C15  C  0  1  N  N  N  42.972  13.571  33.855  -4.600   0.043   0.110  C14  M5D  19  
M5D  O15  O1   O  0  1  N  N  N  43.566  12.515  33.998  -5.299   1.017  -0.071  O15  M5D  20  
M5D  C22  C16  C  0  1  N  N  N  42.064  16.406  35.207  -3.881   2.585   0.666  C22  M5D  21  
M5D  N24  N5   N  0  1  N  N  N  33.795  12.185  31.833   5.539   2.071  -1.293  N24  M5D  22  
M5D  C25  C17  C  0  1  Y  N  N  35.346  15.415  33.357   3.945  -0.699   0.286  C25  M5D  23  
M5D  C26  C18  C  0  1  Y  N  N  35.822  16.741  33.332   4.076  -1.592   1.370  C26  M5D  24  
M5D  N27  N6   N  0  1  Y  N  N  34.811  17.546  33.153   5.148  -2.311   1.175  N27  M5D  25  
M5D  N28  N7   N  0  1  Y  N  N  33.653  16.773  33.058   5.740  -1.913  -0.030  N28  M5D  26  
M5D  C29  C19  C  0  1  Y  N  N  33.988  15.481  33.191   4.991  -0.930  -0.564  C29  M5D  27  
M5D  H1   H1   H  0  1  N  N  N  38.527  11.296  34.232   0.168   2.882  -0.419  H1   M5D  28  
M5D  H2   H2   H  0  1  N  N  N  40.037  15.282  36.458  -1.105   2.689   0.872  H2   M5D  29  
M5D  H3   H3   H  0  1  N  N  N  39.180  15.795  34.966  -1.639   1.878  -0.620  H3   M5D  30  
M5D  H4   H4   H  0  1  N  N  N  42.401  12.266  35.997  -2.326  -1.207   1.820  H4   M5D  31  
M5D  H5   H5   H  0  1  N  N  N  41.781  13.710  36.866  -2.887  -1.825   0.246  H5   M5D  32  
M5D  H6   H6   H  0  1  N  N  N  42.487  14.789  32.043  -4.780  -2.139   0.397  H6   M5D  33  
M5D  H7   H7   H  0  1  N  N  N  45.244  13.248  32.194  -5.046  -0.859  -2.453  H7   M5D  34  
M5D  H8   H8   H  0  1  N  N  N  44.662  14.217  30.798  -5.085  -2.662  -2.066  H8   M5D  35  
M5D  H9   H9   H  0  1  N  N  N  45.078  15.289  33.743  -7.074  -0.498  -0.973  H9   M5D  36  
M5D  H10  H10  H  0  1  N  N  N  44.456  17.502  32.855  -7.492  -2.691   0.600  H10  M5D  37  
M5D  H11  H11  H  0  1  N  N  N  45.445  16.832  31.513  -8.325  -2.589  -0.971  H11  M5D  38  
M5D  H12  H12  H  0  1  N  N  N  43.652  16.769  31.426  -6.838  -3.555  -0.812  H12  M5D  39  
M5D  H13  H13  H  0  1  N  N  N  32.306  18.368  32.802   6.705  -3.308  -1.262  H13  M5D  40  
M5D  H14  H14  H  0  1  N  N  N  31.879  16.856  31.932   7.474  -1.704  -1.191  H14  M5D  41  
M5D  H15  H15  H  0  1  N  N  N  31.663  16.960  33.712   7.618  -2.822   0.187  H15  M5D  42  
M5D  H16  H16  H  0  1  N  N  N  41.055  15.416  33.592  -2.795   1.496   2.180  H16  M5D  43  
M5D  H17  H17  H  0  1  N  N  N  39.863  12.297  36.726  -0.395  -1.398   0.326  H17  M5D  44  
M5D  H18  H18  H  0  1  N  N  N  40.271  11.757  35.063  -1.234  -0.458  -0.932  H18  M5D  45  
M5D  H19  H19  H  0  1  N  N  N  41.472  17.328  35.111  -4.824   2.445   1.195  H19  M5D  46  
M5D  H20  H20  H  0  1  N  N  N  42.296  16.228  36.267  -3.472   3.566   0.906  H20  M5D  47  
M5D  H21  H21  H  0  1  N  N  N  43.000  16.510  34.639  -4.053   2.515  -0.408  H21  M5D  48  
M5D  H22  H22  H  0  1  N  N  N  36.853  17.041  33.443   3.406  -1.666   2.214  H22  M5D  49  
M5D  H23  H23  H  0  1  N  N  N  33.308  14.642  33.171   5.182  -0.416  -1.494  H23  M5D  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M5D  N24  C23  TRIP  N  N   1  
M5D  C18  C16  SING  N  N   2  
M5D  C18  C19  SING  N  N   3  
M5D  C21  C19  SING  N  N   4  
M5D  C23  C2   SING  N  N   5  
M5D  C16  C19  SING  N  N   6  
M5D  C16  C14  SING  N  N   7  
M5D  C30  N28  SING  N  N   8  
M5D  N28  N27  SING  Y  N   9  
M5D  N28  C29  SING  Y  N  10  
M5D  C2   N3   DOUB  Y  N  11  
M5D  C2   C1   SING  Y  N  12  
M5D  N27  C26  DOUB  Y  N  13  
M5D  C29  C25  DOUB  Y  N  14  
M5D  C26  C25  SING  Y  N  15  
M5D  C25  C1   SING  N  N  16  
M5D  N3   C4   SING  Y  N  17  
M5D  C1   N6   DOUB  Y  N  18  
M5D  C14  O15  DOUB  N  N  19  
M5D  C14  N11  SING  N  N  20  
M5D  C4   C5   DOUB  Y  N  21  
M5D  N6   C5   SING  Y  N  22  
M5D  C5   N7   SING  N  N  23  
M5D  C9   N11  SING  N  N  24  
M5D  C9   C22  SING  N  N  25  
M5D  C9   C8   SING  N  N  26  
M5D  N11  C12  SING  N  N  27  
M5D  N7   C8   SING  N  N  28  
M5D  N7   C13  SING  N  N  29  
M5D  C13  C12  SING  N  N  30  
M5D  C4   H1   SING  N  N  31  
M5D  C8   H2   SING  N  N  32  
M5D  C8   H3   SING  N  N  33  
M5D  C12  H4   SING  N  N  34  
M5D  C12  H5   SING  N  N  35  
M5D  C16  H6   SING  N  N  36  
M5D  C18  H7   SING  N  N  37  
M5D  C18  H8   SING  N  N  38  
M5D  C19  H9   SING  N  N  39  
M5D  C21  H10  SING  N  N  40  
M5D  C21  H11  SING  N  N  41  
M5D  C21  H12  SING  N  N  42  
M5D  C30  H13  SING  N  N  43  
M5D  C30  H14  SING  N  N  44  
M5D  C30  H15  SING  N  N  45  
M5D  C9   H16  SING  N  N  46  
M5D  C13  H17  SING  N  N  47  
M5D  C13  H18  SING  N  N  48  
M5D  C22  H19  SING  N  N  49  
M5D  C22  H20  SING  N  N  50  
M5D  C22  H21  SING  N  N  51  
M5D  C26  H22  SING  N  N  52  
M5D  C29  H23  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M5D  SMILES            ACDLabs               12.01  "c1(nc(cnc1C#N)N2CC(N(CC2)C(C3C(C3)C)=O)C)c4cnn(C)c4"  
M5D  InChI             InChI                 1.03   "InChI=1S/C19H23N7O/c1-12-6-15(12)19(27)26-5-4-25(10-13(26)2)17-9-21-16(7-20)18(23-17)14-8-22-24(3)11-14/h8-9,11-13,15H,4-6,10H2,1-3H3/t12-,13-,15-/m1/s1"  
M5D  InChIKey          InChI                 1.03   GXEXIUKEWXZCEF-UMVBOHGHSA-N  
M5D  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1C[C@H]1C(=O)N2CCN(C[C@H]2C)c3cnc(C#N)c(n3)c4cnn(C)c4"  
M5D  SMILES            CACTVS                3.385  "C[CH]1C[CH]1C(=O)N2CCN(C[CH]2C)c3cnc(C#N)c(n3)c4cnn(C)c4"  
M5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1C[C@H]1C(=O)N2CCN(C[C@H]2C)c3cnc(c(n3)c4cnn(c4)C)C#N"  
M5D  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC1C(=O)N2CCN(CC2C)c3cnc(c(n3)c4cnn(c4)C)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile"  
M5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[(3~{R})-3-methyl-4-[(1~{R},2~{R})-2-methylcyclopropyl]carbonyl-piperazin-1-yl]-3-(1-methylpyrazol-4-yl)pyrazine-2-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M5D  "Create component"  2019-03-26  RCSB  
M5D  "Initial release"   2019-12-11  RCSB  
##
