data_M3D
#

_chem_comp.id                                   M3D
_chem_comp.name                                 "7-(3-cyano-4-hydroxyphenyl)-N-[2-(morpholin-4-yl)ethyl]dibenzo[b,f]oxepine-10-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H25 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-20
_chem_comp.pdbx_modified_date                   2019-05-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       467.516
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M3D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OB0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M3D  C1   C1   C  0  1  N  N  N   5.135  -0.648  101.824   0.077   3.827   0.086  C1   M3D   1  
M3D  C2   C2   C  0  1  N  N  N   3.851  -0.566  102.248   0.459   2.593   0.020  C2   M3D   2  
M3D  C3   C3   C  0  1  Y  N  N   6.096   1.532  102.606  -2.290   3.772  -0.473  C3   M3D   3  
M3D  O1   O1   O  0  1  N  N  N   5.215   1.567  103.639  -2.111   2.686  -1.269  O1   M3D   4  
M3D  O2   O2   O  0  1  N  N  N   2.600  -2.320  103.268   2.697   3.239   0.059  O2   M3D   5  
M3D  O3   O3   O  0  1  N  N  N  -0.833   7.724  105.623  -5.507  -5.247  -0.347  O3   M3D   6  
M3D  C11  C4   C  0  1  Y  N  N   3.235   2.844  103.883  -2.519   0.470  -0.755  C11  M3D   7  
M3D  C12  C5   C  0  1  Y  N  N   1.836   3.016  103.790  -2.126  -0.781  -0.084  C12  M3D   8  
M3D  C13  C6   C  0  1  Y  N  N   1.102   1.984  103.159  -1.004  -0.842   0.592  C13  M3D   9  
M3D  C14  C7   C  0  1  Y  N  N   1.758   0.834  102.643  -0.111   0.327   0.639  C14  M3D  10  
M3D  C15  C8   C  0  1  N  N  N   3.135  -1.849  102.267   1.906   2.327  -0.060  C15  M3D  11  
M3D  C16  C9   C  0  1  Y  N  N   1.172   4.243  104.288  -3.009  -1.959  -0.149  C16  M3D  12  
M3D  C17  C10  C  0  1  Y  N  N  -0.240   4.285  104.451  -4.206  -1.886  -0.841  C17  M3D  13  
M3D  C18  C11  C  0  1  Y  N  N  -0.900   5.443  104.949  -5.042  -2.984  -0.909  C18  M3D  14  
M3D  C19  C12  C  0  1  Y  N  N  -0.170   6.630  105.158  -4.687  -4.168  -0.282  C19  M3D  15  
M3D  C20  C13  C  0  1  Y  N  N   1.237   6.639  104.958  -3.475  -4.246   0.420  C20  M3D  16  
M3D  C21  C14  C  0  1  Y  N  N   1.897   5.441  104.574  -2.636  -3.131   0.475  C21  M3D  17  
M3D  C22  C15  C  0  1  N  N  N   2.607  -3.823  100.835   3.787   0.790  -0.239  C22  M3D  18  
M3D  C23  C16  C  0  1  N  N  N   1.148  -3.733  100.393   4.020  -0.700  -0.500  C23  M3D  19  
M3D  C24  C17  C  0  1  N  N  N   1.155  -5.854   99.163   5.740  -2.345  -0.950  C24  M3D  20  
M3D  C25  C18  C  0  1  N  N  N   0.715  -7.319   99.331   7.254  -2.576  -0.961  C25  M3D  21  
M3D  C26  C19  C  0  1  N  N  N  -1.236  -6.595  100.539   7.522  -1.028   0.847  C26  M3D  22  
M3D  C27  C20  C  0  1  N  N  N  -0.870  -5.134  100.229   6.012  -0.781   0.876  C27  M3D  23  
M3D  C28  C21  C  0  1  N  N  N   2.030   7.861  105.182  -3.098  -5.464   1.071  C28  M3D  24  
M3D  C10  C22  C  0  1  Y  N  N   3.885   1.693  103.382  -1.730   1.523  -0.699  C10  M3D  25  
M3D  C4   C23  C  0  1  Y  N  N   6.103   0.441  101.701  -1.301   4.313   0.198  C4   M3D  26  
M3D  C5   C24  C  0  1  Y  N  N   7.039   0.430  100.634  -1.570   5.454   1.100  C5   M3D  27  
M3D  C6   C25  C  0  1  Y  N  N   7.953   1.501  100.493  -2.781   5.950   1.205  C6   M3D  28  
M3D  C7   C26  C  0  1  Y  N  N   7.947   2.566  101.409  -3.882   5.369   0.419  C7   M3D  29  
M3D  C8   C27  C  0  1  Y  N  N   7.033   2.577  102.483  -3.649   4.345  -0.370  C8   M3D  30  
M3D  C9   C28  C  0  1  Y  N  N   3.167   0.662  102.747  -0.447   1.438   0.019  C9   M3D  31  
M3D  N1   N1   N  0  1  N  N  N   3.165  -2.519  101.102   2.350   1.072  -0.267  N1   M3D  32  
M3D  N2   N2   N  0  1  N  N  N   0.583  -5.063  100.262   5.461  -0.983  -0.472  N2   M3D  33  
M3D  N3   N3   N  0  1  N  N  N   2.658   8.843  105.320  -2.798  -6.431   1.588  N3   M3D  34  
M3D  O4   O4   O  0  1  N  N  N  -0.718  -7.359   99.460   7.775  -2.345   0.351  O4   M3D  35  
M3D  H1   H1   H  0  1  N  N  N   5.484  -1.631  101.545   0.854   4.576   0.062  H1   M3D  36  
M3D  H2   H2   H  0  1  N  N  N  -0.224   8.447  105.717  -5.336  -5.826  -1.102  H2   M3D  37  
M3D  H3   H3   H  0  1  N  N  N   3.827   3.616  104.352  -3.453   0.524  -1.293  H3   M3D  38  
M3D  H4   H4   H  0  1  N  N  N   0.029   2.071  103.068  -0.726  -1.756   1.097  H4   M3D  39  
M3D  H5   H5   H  0  1  N  N  N   1.171   0.068  102.158   0.821   0.274   1.184  H5   M3D  40  
M3D  H6   H6   H  0  1  N  N  N  -0.826   3.416  104.190  -4.488  -0.966  -1.330  H6   M3D  41  
M3D  H7   H7   H  0  1  N  N  N  -1.957   5.412  105.166  -5.974  -2.919  -1.450  H7   M3D  42  
M3D  H8   H8   H  0  1  N  N  N   2.974   5.435  104.496  -1.700  -3.185   1.010  H8   M3D  43  
M3D  H9   H9   H  0  1  N  N  N   2.665  -4.430  101.750   4.191   1.054   0.739  H9   M3D  44  
M3D  H10  H10  H  0  1  N  N  N   3.192  -4.305  100.038   4.288   1.376  -1.009  H10  M3D  45  
M3D  H11  H11  H  0  1  N  N  N   1.093  -3.217   99.423   3.520  -1.286   0.271  H11  M3D  46  
M3D  H12  H12  H  0  1  N  N  N   0.575  -3.167  101.142   3.617  -0.965  -1.477  H12  M3D  47  
M3D  H13  H13  H  0  1  N  N  N   2.253  -5.791   99.194   5.347  -2.464  -1.959  H13  M3D  48  
M3D  H14  H14  H  0  1  N  N  N   0.792  -5.466   98.200   5.266  -3.068  -0.286  H14  M3D  49  
M3D  H15  H15  H  0  1  N  N  N   1.024  -7.901   98.450   7.463  -3.603  -1.260  H15  M3D  50  
M3D  H16  H16  H  0  1  N  N  N   1.180  -7.744  100.233   7.722  -1.888  -1.665  H16  M3D  51  
M3D  H17  H17  H  0  1  N  N  N  -2.328  -6.712  100.602   7.998  -0.295   0.195  H17  M3D  52  
M3D  H18  H18  H  0  1  N  N  N  -0.778  -6.912  101.488   7.926  -0.934   1.855  H18  M3D  53  
M3D  H19  H19  H  0  1  N  N  N  -1.302  -4.464  100.987   5.542  -1.479   1.569  H19  M3D  54  
M3D  H20  H20  H  0  1  N  N  N  -1.243  -4.851   99.234   5.816   0.242   1.200  H20  M3D  55  
M3D  H21  H21  H  0  1  N  N  N   7.054  -0.392   99.933  -0.764   5.882   1.677  H21  M3D  56  
M3D  H22  H22  H  0  1  N  N  N   8.660   1.500   99.676  -2.969   6.783   1.867  H22  M3D  57  
M3D  H23  H23  H  0  1  N  N  N   8.646   3.381  101.290  -4.877   5.782   0.491  H23  M3D  58  
M3D  H24  H24  H  0  1  N  N  N   7.051   3.380  103.205  -4.456   3.918  -0.947  H24  M3D  59  
M3D  H25  H25  H  0  1  N  N  N   3.623  -2.065  100.338   1.718   0.355  -0.434  H25  M3D  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M3D  C24  C25  SING  N  N   1  
M3D  C24  N2   SING  N  N   2  
M3D  C25  O4   SING  N  N   3  
M3D  O4   C26  SING  N  N   4  
M3D  C27  N2   SING  N  N   5  
M3D  C27  C26  SING  N  N   6  
M3D  N2   C23  SING  N  N   7  
M3D  C23  C22  SING  N  N   8  
M3D  C6   C5   DOUB  Y  N   9  
M3D  C6   C7   SING  Y  N  10  
M3D  C5   C4   SING  Y  N  11  
M3D  C22  N1   SING  N  N  12  
M3D  N1   C15  SING  N  N  13  
M3D  C7   C8   DOUB  Y  N  14  
M3D  C4   C1   SING  N  N  15  
M3D  C4   C3   DOUB  Y  N  16  
M3D  C1   C2   DOUB  N  N  17  
M3D  C2   C15  SING  N  N  18  
M3D  C2   C9   SING  N  N  19  
M3D  C15  O2   DOUB  N  N  20  
M3D  C8   C3   SING  Y  N  21  
M3D  C3   O1   SING  N  N  22  
M3D  C14  C9   DOUB  Y  N  23  
M3D  C14  C13  SING  Y  N  24  
M3D  C9   C10  SING  Y  N  25  
M3D  C13  C12  DOUB  Y  N  26  
M3D  C10  O1   SING  N  N  27  
M3D  C10  C11  DOUB  Y  N  28  
M3D  C12  C11  SING  Y  N  29  
M3D  C12  C16  SING  N  N  30  
M3D  C16  C17  DOUB  Y  N  31  
M3D  C16  C21  SING  Y  N  32  
M3D  C17  C18  SING  Y  N  33  
M3D  C21  C20  DOUB  Y  N  34  
M3D  C18  C19  DOUB  Y  N  35  
M3D  C20  C19  SING  Y  N  36  
M3D  C20  C28  SING  N  N  37  
M3D  C19  O3   SING  N  N  38  
M3D  C28  N3   TRIP  N  N  39  
M3D  C1   H1   SING  N  N  40  
M3D  O3   H2   SING  N  N  41  
M3D  C11  H3   SING  N  N  42  
M3D  C13  H4   SING  N  N  43  
M3D  C14  H5   SING  N  N  44  
M3D  C17  H6   SING  N  N  45  
M3D  C18  H7   SING  N  N  46  
M3D  C21  H8   SING  N  N  47  
M3D  C22  H9   SING  N  N  48  
M3D  C22  H10  SING  N  N  49  
M3D  C23  H11  SING  N  N  50  
M3D  C23  H12  SING  N  N  51  
M3D  C24  H13  SING  N  N  52  
M3D  C24  H14  SING  N  N  53  
M3D  C25  H15  SING  N  N  54  
M3D  C25  H16  SING  N  N  55  
M3D  C26  H17  SING  N  N  56  
M3D  C26  H18  SING  N  N  57  
M3D  C27  H19  SING  N  N  58  
M3D  C27  H20  SING  N  N  59  
M3D  C5   H21  SING  N  N  60  
M3D  C6   H22  SING  N  N  61  
M3D  C7   H23  SING  N  N  62  
M3D  C8   H24  SING  N  N  63  
M3D  N1   H25  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M3D  SMILES            ACDLabs               12.01  "C2=C(C(=O)NCCN1CCOCC1)c4ccc(cc4Oc3c2cccc3)c5ccc(O)c(C#N)c5"  
M3D  InChI             InChI                 1.03   "InChI=1S/C28H25N3O4/c29-18-22-15-19(6-8-25(22)32)20-5-7-23-24(28(33)30-9-10-31-11-13-34-14-12-31)16-21-3-1-2-4-26(21)35-27(23)17-20/h1-8,15-17,32H,9-14H2,(H,30,33)"  
M3D  InChIKey          InChI                 1.03   WKDYAACRENBHRU-UHFFFAOYSA-N  
M3D  SMILES_CANONICAL  CACTVS                3.385  "Oc1ccc(cc1C#N)c2ccc3c(Oc4ccccc4C=C3C(=O)NCCN5CCOCC5)c2"  
M3D  SMILES            CACTVS                3.385  "Oc1ccc(cc1C#N)c2ccc3c(Oc4ccccc4C=C3C(=O)NCCN5CCOCC5)c2"  
M3D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)C=C(c3ccc(cc3O2)c4ccc(c(c4)C#N)O)C(=O)NCCN5CCOCC5"  
M3D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)C=C(c3ccc(cc3O2)c4ccc(c(c4)C#N)O)C(=O)NCCN5CCOCC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M3D  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-(3-cyano-4-hydroxyphenyl)-N-[2-(morpholin-4-yl)ethyl]dibenzo[b,f]oxepine-10-carboxamide"  
M3D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-(3-cyano-4-oxidanyl-phenyl)-~{N}-(2-morpholin-4-ylethyl)benzo[b][1]benzoxepine-5-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M3D  "Create component"  2019-03-20  RCSB  
M3D  "Initial release"   2019-05-08  RCSB  
##
