data_M1D
#

_chem_comp.id                                   M1D
_chem_comp.name                                 "4-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)butanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H14 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-18
_chem_comp.pdbx_modified_date                   2019-12-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       266.253
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M1D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OA0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M1D  O3   O1   O  0  1  N  N  N  -3.821   -6.427  23.955  -4.233   1.214   0.640  O3   M1D   1  
M1D  C9   C1   C  0  1  N  N  N  -4.350   -7.558  23.981  -3.174   0.710   0.317  C9   M1D   2  
M1D  N3   N1   N  0  1  N  N  N  -5.673   -7.732  23.508  -3.021  -0.623   0.428  N3   M1D   3  
M1D  C10  C2   C  0  1  N  N  N  -6.448   -6.595  22.937  -4.122  -1.446   0.934  C10  M1D   4  
M1D  C5   C3   C  0  1  Y  N  N  -6.210   -9.002  23.593  -1.823  -1.217   0.066  C5   M1D   5  
M1D  N1   N2   N  0  1  Y  N  N  -7.411   -9.417  23.249  -1.378  -2.476   0.062  N1   M1D   6  
M1D  C4   C4   C  0  1  Y  N  N  -7.549  -10.768  23.540  -0.147  -2.510  -0.383  C4   M1D   7  
M1D  N2   N3   N  0  1  N  N  N  -3.672   -8.659  24.574  -2.189   1.498  -0.148  N2   M1D   8  
M1D  C8   C5   C  0  1  N  N  N  -2.329   -8.552  25.092  -2.410   2.942  -0.255  C8   M1D   9  
M1D  C7   C6   C  0  1  N  N  N  -4.302   -9.949  24.654  -1.000   0.978  -0.516  C7   M1D  10  
M1D  O2   O2   O  0  1  N  N  N  -3.647  -10.917  25.127  -0.114   1.702  -0.935  O2   M1D  11  
M1D  C6   C7   C  0  1  Y  N  N  -5.595  -10.104  24.153  -0.794  -0.414  -0.411  C6   M1D  12  
M1D  N    N4   N  0  1  Y  N  N  -6.399  -11.221  24.060   0.260  -1.262  -0.689  N    M1D  13  
M1D  C3   C8   C  0  1  N  N  N  -6.137  -12.587  24.548   1.572  -0.878  -1.216  C3   M1D  14  
M1D  C2   C9   C  0  1  N  N  N  -5.494  -13.477  23.522   2.482  -0.456  -0.061  C2   M1D  15  
M1D  C1   C10  C  0  1  N  N  N  -6.536  -13.860  22.457   3.852  -0.055  -0.611  C1   M1D  16  
M1D  C    C11  C  0  1  N  N  N  -5.869  -14.685  21.380   4.748   0.361   0.526  C    M1D  17  
M1D  O1   O3   O  0  1  N  N  N  -4.943  -15.428  21.746   6.007   0.756   0.279  O1   M1D  18  
M1D  O    O4   O  0  1  N  N  N  -6.233  -14.614  20.066   4.334   0.339   1.661  O    M1D  19  
M1D  H1   H1   H  0  1  N  N  N  -5.835   -5.682  22.965  -4.045  -1.530   2.018  H1   M1D  20  
M1D  H2   H2   H  0  1  N  N  N  -6.719   -6.822  21.895  -5.073  -0.982   0.672  H2   M1D  21  
M1D  H3   H3   H  0  1  N  N  N  -7.363   -6.441  23.529  -4.068  -2.439   0.487  H3   M1D  22  
M1D  H4   H4   H  0  1  N  N  N  -8.438  -11.358  23.374   0.451  -3.402  -0.489  H4   M1D  23  
M1D  H5   H5   H  0  1  N  N  N  -2.014   -9.524  25.500  -3.418   3.182   0.084  H5   M1D  24  
M1D  H6   H6   H  0  1  N  N  N  -1.646   -8.256  24.282  -1.683   3.468   0.365  H6   M1D  25  
M1D  H7   H7   H  0  1  N  N  N  -2.303   -7.794  25.889  -2.293   3.251  -1.294  H7   M1D  26  
M1D  H8   H8   H  0  1  N  N  N  -7.094  -13.038  24.850   2.016  -1.726  -1.737  H8   M1D  27  
M1D  H9   H9   H  0  1  N  N  N  -5.470  -12.523  25.420   1.455  -0.046  -1.910  H9   M1D  28  
M1D  H10  H10  H  0  1  N  N  N  -5.116  -14.387  24.010   2.037   0.392   0.461  H10  M1D  29  
M1D  H11  H11  H  0  1  N  N  N  -4.659  -12.943  23.044   2.598  -1.288   0.633  H11  M1D  30  
M1D  H12  H12  H  0  1  N  N  N  -6.959  -12.947  22.012   4.296  -0.903  -1.133  H12  M1D  31  
M1D  H13  H13  H  0  1  N  N  N  -7.340  -14.447  22.924   3.735   0.778  -1.305  H13  M1D  32  
M1D  H14  H14  H  0  1  N  N  N  -4.586  -15.884  20.993   6.544   1.014   1.041  H14  M1D  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M1D  O    C    DOUB  N  N   1  
M1D  C    O1   SING  N  N   2  
M1D  C    C1   SING  N  N   3  
M1D  C1   C2   SING  N  N   4  
M1D  C10  N3   SING  N  N   5  
M1D  N1   C4   DOUB  Y  N   6  
M1D  N1   C5   SING  Y  N   7  
M1D  N3   C5   SING  N  N   8  
M1D  N3   C9   SING  N  N   9  
M1D  C2   C3   SING  N  N  10  
M1D  C4   N    SING  Y  N  11  
M1D  C5   C6   DOUB  Y  N  12  
M1D  O3   C9   DOUB  N  N  13  
M1D  C9   N2   SING  N  N  14  
M1D  N    C6   SING  Y  N  15  
M1D  N    C3   SING  N  N  16  
M1D  C6   C7   SING  N  N  17  
M1D  N2   C7   SING  N  N  18  
M1D  N2   C8   SING  N  N  19  
M1D  C7   O2   DOUB  N  N  20  
M1D  C10  H1   SING  N  N  21  
M1D  C10  H2   SING  N  N  22  
M1D  C10  H3   SING  N  N  23  
M1D  C4   H4   SING  N  N  24  
M1D  C8   H5   SING  N  N  25  
M1D  C8   H6   SING  N  N  26  
M1D  C8   H7   SING  N  N  27  
M1D  C3   H8   SING  N  N  28  
M1D  C3   H9   SING  N  N  29  
M1D  C2   H10  SING  N  N  30  
M1D  C2   H11  SING  N  N  31  
M1D  C1   H12  SING  N  N  32  
M1D  C1   H13  SING  N  N  33  
M1D  O1   H14  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M1D  SMILES            ACDLabs               12.01  "O=C1N(C(=O)c2c(N1C)ncn2CCCC(O)=O)C"  
M1D  InChI             InChI                 1.03   "InChI=1S/C11H14N4O4/c1-13-9-8(10(18)14(2)11(13)19)15(6-12-9)5-3-4-7(16)17/h6H,3-5H2,1-2H3,(H,16,17)"  
M1D  InChIKey          InChI                 1.03   KCQMWMWEALWVLJ-UHFFFAOYSA-N  
M1D  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)N(C)c2ncn(CCCC(O)=O)c2C1=O"  
M1D  SMILES            CACTVS                3.385  "CN1C(=O)N(C)c2ncn(CCCC(O)=O)c2C1=O"  
M1D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1c2c(n(cn2)CCCC(=O)O)C(=O)N(C1=O)C"  
M1D  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1c2c(n(cn2)CCCC(=O)O)C(=O)N(C1=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M1D  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)butanoic acid"  
M1D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M1D  "Create component"  2019-03-18  RCSB  
M1D  "Initial release"   2019-12-25  RCSB  
##
