data_LKD
#

_chem_comp.id                                   LKD
_chem_comp.name                                 "3-chloro-4,7-difluoro-N-{[2-methoxy-5-(pyridin-4-yl)phenyl]methyl}-N-[trans-4-(methylamino)cyclohexyl]-1-benzothiophene-2-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H28 Cl F2 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-27
_chem_comp.pdbx_modified_date                   2019-06-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       556.066
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LKD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6O3C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LKD  C10   C1   C   0  1  N  N  N  -7.058  13.466  17.577   1.737  -3.102   0.570  C10   LKD   1  
LKD  C13   C2   C   0  1  N  N  N  -7.770  14.709  17.188   0.643  -2.615  -0.382  C13   LKD   2  
LKD  C15   C3   C   0  1  N  N  N  -5.935  18.257  19.723  -1.193   1.297   0.936  C15   LKD   3  
LKD  C17   C4   C   0  1  Y  N  N  -4.431  20.249  20.643  -3.537   0.958   0.183  C17   LKD   4  
LKD  C20   C5   C   0  1  Y  N  N  -4.541  21.815  18.925  -3.914  -1.272  -0.391  C20   LKD   5  
LKD  C21   C6   C   0  1  Y  N  N  -4.285  22.941  18.276  -4.708  -2.336  -0.839  C21   LKD   6  
LKD  C24   C7   C   0  1  Y  N  N  -2.949  23.717  20.015  -6.576  -0.852  -1.070  C24   LKD   7  
LKD  C01   C8   C   0  1  N  N  N  -2.360  15.490  19.724   0.487   4.649  -0.939  C01   LKD   8  
LKD  C03   C9   C   0  1  Y  N  N  -2.572  17.602  18.987   1.804   2.851  -0.112  C03   LKD   9  
LKD  C04   C10  C   0  1  Y  N  N  -3.252  18.330  18.057   2.043   1.807   0.772  C04   LKD  10  
LKD  C05   C11  C   0  1  N  N  N  -4.676  17.873  17.579   1.050   1.504   1.865  C05   LKD  11  
LKD  C07   C12  C   0  1  N  N  N  -6.288  16.083  18.576   0.102  -0.751   1.191  C07   LKD  12  
LKD  C08   C13  C   0  1  N  N  N  -5.331  14.964  18.728   1.196  -1.238   2.144  C08   LKD  13  
LKD  C09   C14  C   0  1  N  N  N  -6.062  13.641  18.696   1.352  -2.754   2.010  C09   LKD  14  
LKD  C12   C15  C   0  1  N  N  N  -8.740  11.929  17.022   2.788  -4.898  -0.667  C12   LKD  15  
LKD  C14   C16  C   0  1  N  N  N  -6.930  15.950  17.242   0.488  -1.099  -0.248  C14   LKD  16  
LKD  C16   C17  C   0  1  Y  N  N  -5.261  19.612  19.716  -2.311   0.487   0.440  C16   LKD  17  
LKD  C19   C18  C   0  1  Y  N  N  -4.011  21.579  20.131  -4.465   0.010  -0.280  C19   LKD  18  
LKD  C23   C19  C   0  1  Y  N  N  -3.508  23.917  18.788  -6.026  -2.124  -1.171  C23   LKD  19  
LKD  C25   C20  C   0  1  Y  N  N  -3.181  22.578  20.678  -5.826   0.197  -0.633  C25   LKD  20  
LKD  C29   C21  C   0  1  Y  N  N  -2.657  19.454  17.518   3.187   1.048   0.651  C29   LKD  21  
LKD  C30   C22  C   0  1  Y  N  N  -1.393  19.825  17.925   4.105   1.329  -0.360  C30   LKD  22  
LKD  C31   C23  C   0  1  Y  N  N  -0.900  21.133  17.325   5.336   0.513  -0.493  C31   LKD  23  
LKD  C32   C24  C   0  1  Y  N  N  -1.464  21.615  16.199   5.594  -0.547   0.381  C32   LKD  24  
LKD  C33   C25  C   0  1  Y  N  N  -1.032  22.842  15.752   6.752  -1.280   0.221  C33   LKD  25  
LKD  C35   C26  C   0  1  Y  N  N   0.320  23.141  17.476   7.400  -0.004  -1.589  C35   LKD  26  
LKD  C36   C27  C   0  1  Y  N  N  -0.021  21.923  18.008   6.268   0.780  -1.501  C36   LKD  27  
LKD  C37   C28  C   0  1  Y  N  N  -0.742  19.111  18.902   3.862   2.378  -1.246  C37   LKD  28  
LKD  C38   C29  C   0  1  Y  N  N  -1.334  17.959  19.429   2.716   3.133  -1.120  C38   LKD  29  
LKD  F22   F1   F   0  1  N  N  N  -4.868  23.029  17.105  -4.179  -3.575  -0.940  F22   LKD  30  
LKD  F26   F2   F   0  1  N  N  N  -2.567  22.540  21.856  -6.381   1.424  -0.536  F26   LKD  31  
LKD  N06   N1   N   0  1  N  N  N  -5.609  17.388  18.625  -0.047   0.701   1.320  N06   LKD  32  
LKD  N11   N2   N   0  1  N  N  N  -8.083  12.585  18.087   1.887  -4.557   0.441  N11   LKD  33  
LKD  N34   N3   N   0  1  Y  N  N  -0.172  23.568  16.388   7.608  -0.992  -0.740  N34   LKD  34  
LKD  O02   O1   O   0  1  N  N  N  -3.236  16.512  19.453   0.673   3.594   0.007  O02   LKD  35  
LKD  O28   O2   O   0  1  N  N  N  -6.682  17.874  20.537  -1.300   2.507   1.001  O28   LKD  36  
LKD  S27   S1   S   0  1  Y  N  N  -5.462  20.572  18.429  -2.226  -1.234   0.104  S27   LKD  37  
LKD  CL18  CL1  CL  0  0  N  N  N  -3.997  19.520  22.139  -3.955   2.627   0.412  CL18  LKD  38  
LKD  H1    H1   H   0  1  N  N  N  -6.562  13.022  16.701   2.680  -2.616   0.319  H1    LKD  39  
LKD  H2    H2   H   0  1  N  N  N  -8.624  14.843  17.868   0.918  -2.863  -1.408  H2    LKD  40  
LKD  H3    H3   H   0  1  N  N  N  -8.137  14.587  16.158  -0.299  -3.101  -0.131  H3    LKD  41  
LKD  H4    H4   H   0  1  N  N  N  -2.319  24.478  20.452  -7.611  -0.694  -1.336  H4    LKD  42  
LKD  H5    H5   H   0  1  N  N  N  -2.917  14.619  20.099   1.312   5.357  -0.860  H5    LKD  43  
LKD  H6    H6   H   0  1  N  N  N  -1.823  15.214  18.804   0.461   4.233  -1.946  H6    LKD  44  
LKD  H7    H7   H   0  1  N  N  N  -1.637  15.819  20.485  -0.452   5.161  -0.732  H7    LKD  45  
LKD  H8    H8   H   0  1  N  N  N  -5.151  18.731  17.081   1.546   0.949   2.662  H8    LKD  46  
LKD  H9    H9   H   0  1  N  N  N  -4.538  17.058  16.853   0.653   2.437   2.265  H9    LKD  47  
LKD  H10   H10  H   0  1  N  N  N  -7.054  16.029  19.364  -0.841  -1.237   1.442  H10   LKD  48  
LKD  H11   H11  H   0  1  N  N  N  -4.602  14.996  17.905   2.139  -0.752   1.893  H11   LKD  49  
LKD  H12   H12  H   0  1  N  N  N  -4.805  15.065  19.689   0.922  -0.990   3.169  H12   LKD  50  
LKD  H13   H13  H   0  1  N  N  N  -6.602  13.531  19.648   0.409  -3.240   2.260  H13   LKD  51  
LKD  H14   H14  H   0  1  N  N  N  -5.311  12.843  18.606   2.131  -3.101   2.688  H14   LKD  52  
LKD  H15   H15  H   0  1  N  N  N  -9.517  11.262  17.425   2.881  -5.982  -0.740  H15   LKD  53  
LKD  H16   H16  H   0  1  N  N  N  -9.205  12.676  16.362   2.383  -4.504  -1.599  H16   LKD  54  
LKD  H17   H17  H   0  1  N  N  N  -8.010  11.338  16.450   3.770  -4.461  -0.484  H17   LKD  55  
LKD  H18   H18  H   0  1  N  N  N  -6.150  15.894  16.468   1.431  -0.613  -0.499  H18   LKD  56  
LKD  H19   H19  H   0  1  N  N  N  -7.567  16.827  17.057  -0.291  -0.752  -0.927  H19   LKD  57  
LKD  H20   H20  H   0  1  N  N  N  -3.333  24.832  18.241  -6.634  -2.947  -1.516  H20   LKD  58  
LKD  H21   H21  H   0  1  N  N  N  -3.181  20.041  16.779   3.373   0.236   1.339  H21   LKD  59  
LKD  H22   H22  H   0  1  N  N  N  -2.224  21.060  15.669   4.898  -0.788   1.171  H22   LKD  60  
LKD  H23   H23  H   0  1  N  N  N  -1.432  23.218  14.822   6.960  -2.100   0.892  H23   LKD  61  
LKD  H24   H24  H   0  1  N  N  N   1.033  23.758  18.003   8.126   0.194  -2.365  H24   LKD  62  
LKD  H25   H25  H   0  1  N  N  N   0.398  21.596  18.948   6.104   1.587  -2.200  H25   LKD  63  
LKD  H26   H26  H   0  1  N  N  N   0.223  19.438  19.261   4.571   2.598  -2.030  H26   LKD  64  
LKD  H27   H27  H   0  1  N  N  N  -0.821  17.365  20.171   2.525   3.943  -1.809  H27   LKD  65  
LKD  H28   H28  H   0  1  N  N  N  -8.749  13.120  18.606   0.989  -5.004   0.328  H28   LKD  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LKD  C33  C32   DOUB  Y  N   1  
LKD  C33  N34   SING  Y  N   2  
LKD  C32  C31   SING  Y  N   3  
LKD  N34  C35   DOUB  Y  N   4  
LKD  C12  N11   SING  N  N   5  
LKD  F22  C21   SING  N  N   6  
LKD  C13  C14   SING  N  N   7  
LKD  C13  C10   SING  N  N   8  
LKD  C14  C07   SING  N  N   9  
LKD  C31  C30   SING  N  N  10  
LKD  C31  C36   DOUB  Y  N  11  
LKD  C35  C36   SING  Y  N  12  
LKD  C29  C30   DOUB  Y  N  13  
LKD  C29  C04   SING  Y  N  14  
LKD  C10  N11   SING  N  N  15  
LKD  C10  C09   SING  N  N  16  
LKD  C05  C04   SING  N  N  17  
LKD  C05  N06   SING  N  N  18  
LKD  C30  C37   SING  Y  N  19  
LKD  C04  C03   DOUB  Y  N  20  
LKD  C21  C23   DOUB  Y  N  21  
LKD  C21  C20   SING  Y  N  22  
LKD  S27  C20   SING  Y  N  23  
LKD  S27  C16   SING  Y  N  24  
LKD  C07  N06   SING  N  N  25  
LKD  C07  C08   SING  N  N  26  
LKD  N06  C15   SING  N  N  27  
LKD  C09  C08   SING  N  N  28  
LKD  C23  C24   SING  Y  N  29  
LKD  C37  C38   DOUB  Y  N  30  
LKD  C20  C19   DOUB  Y  N  31  
LKD  C03  C38   SING  Y  N  32  
LKD  C03  O02   SING  N  N  33  
LKD  O02  C01   SING  N  N  34  
LKD  C16  C15   SING  N  N  35  
LKD  C16  C17   DOUB  Y  N  36  
LKD  C15  O28   DOUB  N  N  37  
LKD  C24  C25   DOUB  Y  N  38  
LKD  C19  C17   SING  Y  N  39  
LKD  C19  C25   SING  Y  N  40  
LKD  C17  CL18  SING  N  N  41  
LKD  C25  F26   SING  N  N  42  
LKD  C10  H1    SING  N  N  43  
LKD  C13  H2    SING  N  N  44  
LKD  C13  H3    SING  N  N  45  
LKD  C24  H4    SING  N  N  46  
LKD  C01  H5    SING  N  N  47  
LKD  C01  H6    SING  N  N  48  
LKD  C01  H7    SING  N  N  49  
LKD  C05  H8    SING  N  N  50  
LKD  C05  H9    SING  N  N  51  
LKD  C07  H10   SING  N  N  52  
LKD  C08  H11   SING  N  N  53  
LKD  C08  H12   SING  N  N  54  
LKD  C09  H13   SING  N  N  55  
LKD  C09  H14   SING  N  N  56  
LKD  C12  H15   SING  N  N  57  
LKD  C12  H16   SING  N  N  58  
LKD  C12  H17   SING  N  N  59  
LKD  C14  H18   SING  N  N  60  
LKD  C14  H19   SING  N  N  61  
LKD  C23  H20   SING  N  N  62  
LKD  C29  H21   SING  N  N  63  
LKD  C32  H22   SING  N  N  64  
LKD  C33  H23   SING  N  N  65  
LKD  C35  H24   SING  N  N  66  
LKD  C36  H25   SING  N  N  67  
LKD  C37  H26   SING  N  N  68  
LKD  C38  H27   SING  N  N  69  
LKD  N11  H28   SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LKD  SMILES            ACDLabs               12.01  "C5(NC)CCC(N(C(=O)c2c(Cl)c1c(c(ccc1F)F)s2)Cc3c(ccc(c3)c4ccncc4)OC)CC5"  
LKD  InChI             InChI                 1.03   "InChI=1S/C29H28ClF2N3O2S/c1-33-20-4-6-21(7-5-20)35(29(36)28-26(30)25-22(31)8-9-23(32)27(25)38-28)16-19-15-18(3-10-24(19)37-2)17-11-13-34-14-12-17/h3,8-15,20-21,33H,4-7,16H2,1-2H3/t20-,21-"  
LKD  InChIKey          InChI                 1.03   YVIFQUJDZSAFKG-MEMLXQNLSA-N  
LKD  SMILES_CANONICAL  CACTVS                3.385  "CN[C@H]1CC[C@@H](CC1)N(Cc2cc(ccc2OC)c3ccncc3)C(=O)c4sc5c(F)ccc(F)c5c4Cl"  
LKD  SMILES            CACTVS                3.385  "CN[CH]1CC[CH](CC1)N(Cc2cc(ccc2OC)c3ccncc3)C(=O)c4sc5c(F)ccc(F)c5c4Cl"  
LKD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CNC1CCC(CC1)N(Cc2cc(ccc2OC)c3ccncc3)C(=O)c4c(c5c(ccc(c5s4)F)F)Cl"  
LKD  SMILES            "OpenEye OEToolkits"  2.0.7  "CNC1CCC(CC1)N(Cc2cc(ccc2OC)c3ccncc3)C(=O)c4c(c5c(ccc(c5s4)F)F)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LKD  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-chloro-4,7-difluoro-N-{[2-methoxy-5-(pyridin-4-yl)phenyl]methyl}-N-[trans-4-(methylamino)cyclohexyl]-1-benzothiophene-2-carboxamide"  
LKD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-chloranyl-4,7-bis(fluoranyl)-~{N}-[(2-methoxy-5-pyridin-4-yl-phenyl)methyl]-~{N}-[4-(methylamino)cyclohexyl]-1-benzothiophene-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LKD  "Create component"  2019-02-27  RCSB  
LKD  "Initial release"   2019-07-03  RCSB  
##
