data_L6D
# 
_chem_comp.id                                    L6D 
_chem_comp.name                                  "N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H12 Cl N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-15 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        285.728 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L6D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GBX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L6D N1  N1  N  0 1 Y N N N N N 7.585  -0.335 19.466 -2.212 0.033  -0.067 N1  L6D 1  
L6D C4  C1  C  0 1 Y N N N N N 11.068 -0.678 22.726 2.509  1.054  0.141  C4  L6D 2  
L6D C5  C2  C  0 1 N N N N N N 9.582  -0.867 22.535 1.183  1.454  0.736  C5  L6D 3  
L6D C6  C3  C  0 1 N N N N N N 9.133  -0.215 21.241 0.087  0.622  0.122  C6  L6D 4  
L6D C7  C4  C  0 1 Y N N N N N 7.945  -0.297 18.159 -2.058 -0.938 -1.008 C7  L6D 5  
L6D C8  C5  C  0 1 Y N N N N N 6.160  0.883  18.315 -4.188 -0.849 -0.586 C8  L6D 6  
L6D C10 C6  C  0 1 Y N N N N N 4.399  2.240  19.211 -6.305 -0.233 0.342  C10 L6D 7  
L6D C13 C7  C  0 1 Y N N N N N 6.411  0.402  19.601 -3.559 0.111  0.225  C13 L6D 8  
L6D O   O1  O  0 1 N N N N N N 9.509  0.909  20.921 0.355  -0.213 -0.716 O   L6D 9  
L6D C3  C8  C  0 1 Y N N N N N 11.556 0.258  23.629 2.978  1.691  -0.992 C3  L6D 10 
L6D C2  C9  C  0 1 Y N N N N N 12.896 0.612  23.628 4.195  1.325  -1.538 C2  L6D 11 
L6D C1  C10 C  0 1 Y N N N N N 13.775 0.016  22.734 4.943  0.323  -0.950 C1  L6D 12 
L6D C14 C11 C  0 1 Y N N N N N 11.961 -1.318 21.872 3.259  0.055  0.734  C14 L6D 13 
L6D C   C12 C  0 1 Y N N N N N 13.293 -0.961 21.886 4.474  -0.315 0.185  C   L6D 14 
L6D CL  CL1 CL 0 0 N N N N N N 14.395 -1.784 20.815 5.417  -1.569 0.928  CL  L6D 15 
L6D N   N2  N  0 1 N N N N N N 8.276  -0.946 20.505 -1.193 0.806  0.504  N   L6D 16 
L6D N2  N3  N  0 1 Y N N N N N 7.128  0.411  17.421 -3.212 -1.456 -1.309 N2  L6D 17 
L6D C12 C13 C  0 1 Y N N N N N 5.684  0.827  20.706 -4.318 0.890  1.088  C12 L6D 18 
L6D C11 C14 C  0 1 Y N N N N N 4.671  1.756  20.493 -5.685 0.715  1.143  C11 L6D 19 
L6D C9  C15 C  0 1 Y N N N N N 5.138  1.809  18.113 -5.574 -1.009 -0.513 C9  L6D 20 
L6D H1  H1  H  0 1 N N N N N N 9.046  -0.408 23.378 1.204  1.289  1.813  H1  L6D 21 
L6D H2  H2  H  0 1 N N N N N N 9.354  -1.943 22.498 0.997  2.508  0.533  H2  L6D 22 
L6D H3  H3  H  0 1 N N N N N N 8.817  -0.800 17.767 -1.114 -1.234 -1.441 H3  L6D 23 
L6D H4  H4  H  0 1 N N N N N N 3.605  2.958  19.070 -7.376 -0.359 0.395  H4  L6D 24 
L6D H5  H5  H  0 1 N N N N N N 10.884 0.715  24.340 2.393  2.474  -1.452 H5  L6D 25 
L6D H6  H6  H  0 1 N N N N N N 13.257 1.354  24.325 4.560  1.823  -2.424 H6  L6D 26 
L6D H7  H7  H  0 1 N N N N N N 14.814 0.310  22.703 5.893  0.038  -1.377 H7  L6D 27 
L6D H8  H8  H  0 1 N N N N N N 11.613 -2.090 21.202 2.893  -0.442 1.619  H8  L6D 28 
L6D H9  H9  H  0 1 N N N N N N 8.138  -1.916 20.703 -1.408 1.474  1.174  H9  L6D 29 
L6D H10 H10 H  0 1 N N N N N N 5.898  0.450  21.695 -3.840 1.629  1.714  H10 L6D 30 
L6D H11 H11 H  0 1 N N N N N N 4.087  2.108  21.330 -6.276 1.320  1.814  H11 L6D 31 
L6D H12 H12 H  0 1 N N N N N N 4.924  2.185  17.123 -6.067 -1.744 -1.132 H12 L6D 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L6D N2  C7  DOUB Y N 1  
L6D N2  C8  SING Y N 2  
L6D C9  C8  DOUB Y N 3  
L6D C9  C10 SING Y N 4  
L6D C7  N1  SING Y N 5  
L6D C8  C13 SING Y N 6  
L6D C10 C11 DOUB Y N 7  
L6D N1  C13 SING Y N 8  
L6D N1  N   SING N N 9  
L6D C13 C12 DOUB Y N 10 
L6D C11 C12 SING Y N 11 
L6D N   C6  SING N N 12 
L6D CL  C   SING N N 13 
L6D O   C6  DOUB N N 14 
L6D C6  C5  SING N N 15 
L6D C14 C   DOUB Y N 16 
L6D C14 C4  SING Y N 17 
L6D C   C1  SING Y N 18 
L6D C5  C4  SING N N 19 
L6D C4  C3  DOUB Y N 20 
L6D C1  C2  DOUB Y N 21 
L6D C2  C3  SING Y N 22 
L6D C5  H1  SING N N 23 
L6D C5  H2  SING N N 24 
L6D C7  H3  SING N N 25 
L6D C10 H4  SING N N 26 
L6D C3  H5  SING N N 27 
L6D C2  H6  SING N N 28 
L6D C1  H7  SING N N 29 
L6D C14 H8  SING N N 30 
L6D N   H9  SING N N 31 
L6D C12 H10 SING N N 32 
L6D C11 H11 SING N N 33 
L6D C9  H12 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L6D SMILES           ACDLabs              12.01 "Clc1cccc(c1)CC(=O)Nn1cnc2ccccc21"                                                                         
L6D InChI            InChI                1.06  "InChI=1S/C15H12ClN3O/c16-12-5-3-4-11(8-12)9-15(20)18-19-10-17-13-6-1-2-7-14(13)19/h1-8,10H,9H2,(H,18,20)" 
L6D InChIKey         InChI                1.06  YHLCUCKEOZVUDL-UHFFFAOYSA-N                                                                                
L6D SMILES_CANONICAL CACTVS               3.385 "Clc1cccc(CC(=O)Nn2cnc3ccccc23)c1"                                                                         
L6D SMILES           CACTVS               3.385 "Clc1cccc(CC(=O)Nn2cnc3ccccc23)c1"                                                                         
L6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)Cc3cccc(c3)Cl"                                                                       
L6D SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2NC(=O)Cc3cccc(c3)Cl"                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L6D "SYSTEMATIC NAME" ACDLabs              12.01 "N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide"  
L6D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(benzimidazol-1-yl)-2-(3-chlorophenyl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L6D "Create component" 2023-08-15 RCSB 
L6D "Initial release"  2023-11-08 RCSB 
# 
