data_L4D
#

_chem_comp.id                                   L4D
_chem_comp.name                                 "{(S)-N-(2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H21 Fe N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{N,N'-Bis(2-pyridylmethyl)-N-carboxymethyl-N'-methyl}iron(2+)"
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2012-12-13
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       369.219
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L4D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4I9D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L4D  FE   FE   FE  2  0  N  N  N  -35.879  21.438  -20.857  -35.879  21.438  -20.857  FE   L4D   1  
L4D  CAK  CAK  C   0  1  Y  N  N  -32.211  19.447  -20.879  -32.211  19.447  -20.879  CAK  L4D   2  
L4D  CAG  CAG  C   0  1  Y  N  N  -32.204  18.638  -19.751  -32.204  18.638  -19.751  CAG  L4D   3  
L4D  CAE  CAE  C   0  1  Y  N  N  -33.330  18.561  -18.906  -33.330  18.561  -18.906  CAE  L4D   4  
L4D  CAI  CAI  C   0  1  Y  N  N  -34.456  19.353  -19.208  -34.456  19.353  -19.208  CAI  L4D   5  
L4D  NAS  NAS  N   0  1  Y  N  N  -34.422  20.105  -20.290  -34.422  20.105  -20.290  NAS  L4D   6  
L4D  CAW  CAW  C   0  1  Y  N  N  -33.361  20.227  -21.116  -33.361  20.227  -21.116  CAW  L4D   7  
L4D  CAQ  CAQ  C   0  1  N  N  N  -33.488  21.116  -22.344  -33.488  21.116  -22.344  CAQ  L4D   8  
L4D  N    N    N   0  1  N  N  N  -34.943  21.221  -22.735  -34.943  21.221  -22.735  N    L4D   9  
L4D  CA   CA   C   0  1  N  N  N  -35.464  19.980  -23.425  -35.464  19.980  -23.425  CA   L4D  10  
L4D  C    C    C   0  1  N  N  N  -36.870  19.532  -22.844  -36.870  19.532  -22.844  C    L4D  11  
L4D  OAE  OAE  O   0  1  N  N  N  -37.238  19.953  -21.707  -37.238  19.953  -21.707  OAE  L4D  12  
L4D  O    O    O   0  1  N  N  N  -37.572  18.847  -23.587  -37.572  18.847  -23.587  O    L4D  13  
L4D  CAM  CAM  C   0  1  N  N  N  -35.082  22.386  -23.638  -35.082  22.386  -23.638  CAM  L4D  14  
L4D  CAN  CAN  C   0  1  N  N  N  -36.384  23.198  -23.449  -36.384  23.198  -23.449  CAN  L4D  15  
L4D  NAZ  NAZ  N   0  1  N  N  N  -36.811  23.317  -22.031  -36.811  23.317  -22.031  NAZ  L4D  16  
L4D  CAP  CAP  C   0  1  N  N  N  -38.211  22.986  -21.822  -38.211  22.986  -21.822  CAP  L4D  17  
L4D  CAR  CAR  C   0  1  N  N  N  -36.543  24.609  -21.409  -36.543  24.609  -21.409  CAR  L4D  18  
L4D  CAX  CAX  C   0  1  Y  N  N  -35.339  24.479  -20.433  -35.339  24.479  -20.433  CAX  L4D  19  
L4D  CAL  CAL  C   0  1  Y  N  N  -34.760  25.626  -19.884  -34.760  25.626  -19.884  CAL  L4D  20  
L4D  CAH  CAH  C   0  1  Y  N  N  -33.696  25.540  -18.990  -33.696  25.540  -18.990  CAH  L4D  21  
L4D  CAF  CAF  C   0  1  Y  N  N  -33.218  24.269  -18.682  -33.218  24.269  -18.682  CAF  L4D  22  
L4D  CAJ  CAJ  C   0  1  Y  N  N  -33.805  23.150  -19.270  -33.805  23.150  -19.270  CAJ  L4D  23  
L4D  NAT  NAT  N   0  1  Y  N  N  -34.837  23.275  -20.118  -34.837  23.275  -20.118  NAT  L4D  24  
L4D  H1   H1   H   0  1  N  N  N  -31.366  19.478  -21.551  -31.366  19.478  -21.551  H1   L4D  25  
L4D  H2   H2   H   0  1  N  N  N  -31.323  18.059  -19.517  -31.323  18.059  -19.517  H2   L4D  26  
L4D  H3   H3   H   0  1  N  N  N  -33.330  17.909  -18.045  -33.330  17.909  -18.045  H3   L4D  27  
L4D  H4   H4   H   0  1  N  N  N  -35.326  19.344  -18.568  -35.326  19.344  -18.568  H4   L4D  28  
L4D  H5   H5   H   0  1  N  N  N  -32.915  20.679  -23.175  -32.915  20.679  -23.175  H5   L4D  29  
L4D  H6   H6   H   0  1  N  N  N  -33.096  22.118  -22.115  -33.096  22.118  -22.115  H6   L4D  30  
L4D  H7   H7   H   0  1  N  N  N  -34.742  19.163  -23.281  -34.742  19.163  -23.281  H7   L4D  31  
L4D  H8   H8   H   0  1  N  N  N  -35.572  20.189  -24.500  -35.572  20.189  -24.500  H8   L4D  32  
L4D  H9   H9   H   0  1  N  N  N  -35.053  22.021  -24.675  -35.053  22.021  -24.675  H9   L4D  33  
L4D  H10  H10  H   0  1  N  N  N  -34.230  23.059  -23.463  -34.230  23.059  -23.463  H10  L4D  34  
L4D  H11  H11  H   0  1  N  N  N  -36.224  24.210  -23.850  -36.224  24.210  -23.850  H11  L4D  35  
L4D  H12  H12  H   0  1  N  N  N  -37.188  22.703  -24.014  -37.188  22.703  -24.014  H12  L4D  36  
L4D  H13  H13  H   0  1  N  N  N  -38.459  23.095  -20.756  -38.459  23.095  -20.756  H13  L4D  37  
L4D  H14  H14  H   0  1  N  N  N  -38.841  23.665  -22.416  -38.841  23.665  -22.416  H14  L4D  38  
L4D  H15  H15  H   0  1  N  N  N  -38.393  21.948  -22.137  -38.393  21.948  -22.137  H15  L4D  39  
L4D  H16  H16  H   0  1  N  N  N  -36.304  25.348  -22.188  -36.304  25.348  -22.188  H16  L4D  40  
L4D  H17  H17  H   0  1  N  N  N  -37.432  24.938  -20.851  -37.432  24.938  -20.851  H17  L4D  41  
L4D  H18  H18  H   0  1  N  N  N  -35.145  26.597  -20.158  -35.145  26.597  -20.158  H18  L4D  42  
L4D  H19  H19  H   0  1  N  N  N  -33.258  26.425  -18.552  -33.258  26.425  -18.552  H19  L4D  43  
L4D  H20  H20  H   0  1  N  N  N  -32.396  24.151  -17.991  -32.396  24.151  -17.991  H20  L4D  44  
L4D  H21  H21  H   0  1  N  N  N  -33.423  22.167  -19.039  -33.423  22.167  -19.039  H21  L4D  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L4D  CAM  CAN  SING  N  N   1  
L4D  CAM  N    SING  N  N   2  
L4D  O    C    DOUB  N  N   3  
L4D  CAN  NAZ  SING  N  N   4  
L4D  CA   C    SING  N  N   5  
L4D  CA   N    SING  N  N   6  
L4D  C    OAE  SING  N  N   7  
L4D  N    CAQ  SING  N  N   8  
L4D  N    FE   SING  N  N   9  
L4D  CAQ  CAW  SING  N  N  10  
L4D  NAZ  CAP  SING  N  N  11  
L4D  NAZ  CAR  SING  N  N  12  
L4D  NAZ  FE   SING  N  N  13  
L4D  OAE  FE   SING  N  N  14  
L4D  CAR  CAX  SING  N  N  15  
L4D  CAW  CAK  DOUB  Y  N  16  
L4D  CAW  NAS  SING  Y  N  17  
L4D  CAK  CAG  SING  Y  N  18  
L4D  FE   NAS  SING  N  N  19  
L4D  FE   NAT  SING  N  N  20  
L4D  CAX  NAT  DOUB  Y  N  21  
L4D  CAX  CAL  SING  Y  N  22  
L4D  NAS  CAI  DOUB  Y  N  23  
L4D  NAT  CAJ  SING  Y  N  24  
L4D  CAL  CAH  DOUB  Y  N  25  
L4D  CAG  CAE  DOUB  Y  N  26  
L4D  CAJ  CAF  DOUB  Y  N  27  
L4D  CAI  CAE  SING  Y  N  28  
L4D  CAH  CAF  SING  Y  N  29  
L4D  CAK  H1   SING  N  N  30  
L4D  CAG  H2   SING  N  N  31  
L4D  CAE  H3   SING  N  N  32  
L4D  CAI  H4   SING  N  N  33  
L4D  CAQ  H5   SING  N  N  34  
L4D  CAQ  H6   SING  N  N  35  
L4D  CA   H7   SING  N  N  36  
L4D  CA   H8   SING  N  N  37  
L4D  CAM  H9   SING  N  N  38  
L4D  CAM  H10  SING  N  N  39  
L4D  CAN  H11  SING  N  N  40  
L4D  CAN  H12  SING  N  N  41  
L4D  CAP  H13  SING  N  N  42  
L4D  CAP  H14  SING  N  N  43  
L4D  CAP  H15  SING  N  N  44  
L4D  CAR  H16  SING  N  N  45  
L4D  CAR  H17  SING  N  N  46  
L4D  CAL  H18  SING  N  N  47  
L4D  CAH  H19  SING  N  N  48  
L4D  CAF  H20  SING  N  N  49  
L4D  CAJ  H21  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L4D  SMILES            ACDLabs               12.01  "O=C5O[Fe+2]346n1ccccc1CN6(CCN4(Cc2ccccn23)C)C5"  
L4D  InChI             InChI                 1.03   "InChI=1S/C17H22N4O2.Fe/c1-20(12-15-6-2-4-8-18-15)10-11-21(14-17(22)23)13-16-7-3-5-9-19-16;/h2-9H,10-14H2,1H3,(H,22,23);/q;+3/p-1"  
L4D  InChIKey          InChI                 1.03   KEGLXUIHTNIIAB-UHFFFAOYSA-M  
L4D  SMILES_CANONICAL  CACTVS                3.370  "CN12|[Fe++]|3|4(OC(=O)CN|3(CC1)Cc5ccccn|45)|n6ccccc6C2"  
L4D  SMILES            CACTVS                3.370  "CN12|[Fe++]|3|4(OC(=O)CN|3(CC1)Cc5ccccn|45)|n6ccccc6C2"  
L4D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[N]12CC[N]34[Fe+2]1([N]5=C(C2)C=CC=C5)([N]6=CC=CC=C6C3)OC(=O)C4"  
L4D  SMILES            "OpenEye OEToolkits"  1.7.6  "C[N]12CC[N]34[Fe+2]1([N]5=C(C2)C=CC=C5)([N]6=CC=CC=C6C3)OC(=O)C4"  
#
_pdbx_chem_comp_identifier.comp_id          L4D
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "{(S)-N-(2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L4D  "Create component"  2012-12-13  RCSB  
L4D  "Modify synonyms"   2012-12-21  RCSB  
L4D  "Initial release"   2013-04-17  RCSB  
L4D  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     L4D
_pdbx_chem_comp_synonyms.name        "{N,N'-Bis(2-pyridylmethyl)-N-carboxymethyl-N'-methyl}iron(2+)"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
