data_L2D
#

_chem_comp.id                                   L2D
_chem_comp.name                                 "{2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H26 Fe N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-02-16
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       466.311
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L2D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4DCX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L2D  CAK  CAK  C   0  1  Y  N  N  -1.384  -6.684  -31.344  -1.384  -6.684  -31.344  CAK  L2D   1  
L2D  CAG  CAG  C   0  1  Y  N  N  -0.572  -7.726  -31.752  -0.572  -7.726  -31.752  CAG  L2D   2  
L2D  CAE  CAE  C   0  1  Y  N  N  -0.174  -7.816  -33.079  -0.174  -7.816  -33.079  CAE  L2D   3  
L2D  CAI  CAI  C   0  1  Y  N  N  -0.599  -6.857  -33.981  -0.599  -6.857  -33.981  CAI  L2D   4  
L2D  NAU  NAU  N   0  1  Y  N  N  -1.379  -5.880  -33.565  -1.379  -5.880  -33.565  NAU  L2D   5  
L2D  CAY  CAY  C   0  1  Y  N  N  -1.797  -5.764  -32.293  -1.797  -5.764  -32.293  CAY  L2D   6  
L2D  CAS  CAS  C   0  1  N  N  N  -2.687  -4.571  -31.935  -2.687  -4.571  -31.935  CAS  L2D   7  
L2D  N    N    N   0  1  N  N  N  -2.933  -4.031  -33.248  -2.933  -4.031  -33.248  N    L2D   8  
L2D  CA   CA   C   0  1  N  N  N  -3.952  -4.931  -33.878  -3.952  -4.931  -33.878  CA   L2D   9  
L2D  C    C    C   0  1  N  N  N  -3.960  -4.929  -35.439  -3.960  -4.929  -35.439  C    L2D  10  
L2D  OXT  OXT  O   0  1  N  N  N  -2.916  -4.569  -36.050  -2.916  -4.569  -36.050  OXT  L2D  11  
L2D  O    O    O   0  1  N  N  N  -4.970  -5.420  -36.002  -4.970  -5.420  -36.002  O    L2D  12  
L2D  CBA  CBA  C   0  1  N  N  R  -3.274  -2.607  -33.064  -3.274  -2.607  -33.064  CBA  L2D  13  
L2D  CAO  CAO  C   0  1  N  N  N  -4.716  -2.464  -32.551  -4.716  -2.464  -32.551  CAO  L2D  14  
L2D  CAM  CAM  C   0  1  N  N  N  -5.015  -0.980  -32.388  -5.015  -0.980  -32.388  CAM  L2D  15  
L2D  CAN  CAN  C   0  1  N  N  N  -4.861  -0.258  -33.741  -4.861  -0.258  -33.741  CAN  L2D  16  
L2D  CAP  CAP  C   0  1  N  N  N  -3.423  -0.458  -34.237  -3.423  -0.458  -34.237  CAP  L2D  17  
L2D  CBB  CBB  C   0  1  N  N  R  -3.164  -1.957  -34.399  -3.164  -1.957  -34.399  CBB  L2D  18  
L2D  NBD  NBD  N   0  1  N  N  N  -1.765  -2.145  -34.867  -1.765  -2.145  -34.867  NBD  L2D  19  
L2D  CAR  CAR  C   0  1  N  N  N  -0.877  -1.342  -33.995  -0.877  -1.342  -33.995  CAR  L2D  20  
L2D  CAX  CAX  C   0  1  N  N  N   0.249  -2.191  -33.372   0.249  -2.191  -33.372  CAX  L2D  21  
L2D  OAD  OAD  O   0  1  N  N  N   0.141  -3.440  -33.381   0.141  -3.440  -33.381  OAD  L2D  22  
L2D  OAB  OAB  O   0  1  N  N  N   1.195  -1.567  -32.854   1.195  -1.567  -32.854  OAB  L2D  23  
L2D  CAT  CAT  C   0  1  N  N  N  -1.593  -1.675  -36.253  -1.593  -1.675  -36.253  CAT  L2D  24  
L2D  CAZ  CAZ  C   0  1  Y  N  N  -0.301  -2.319  -36.745  -0.301  -2.319  -36.745  CAZ  L2D  25  
L2D  CAL  CAL  C   0  1  Y  N  N   0.575  -1.658  -37.596   0.575  -1.658  -37.596  CAL  L2D  26  
L2D  CAH  CAH  C   0  1  Y  N  N   1.730  -2.314  -38.002   1.730  -2.314  -38.002  CAH  L2D  27  
L2D  CAF  CAF  C   0  1  Y  N  N   1.961  -3.615  -37.562   1.961  -3.615  -37.562  CAF  L2D  28  
L2D  CAJ  CAJ  C   0  1  Y  N  N   1.039  -4.228  -36.725   1.039  -4.228  -36.725  CAJ  L2D  29  
L2D  NAV  NAV  N   0  1  Y  N  N  -0.044  -3.569  -36.349  -0.044  -3.569  -36.349  NAV  L2D  30  
L2D  FE   FE   FE  0  0  N  N  N  -1.360  -4.134  -34.676  -1.360  -4.134  -34.676  FE   L2D  31  
L2D  H1   H1   H   0  1  N  N  N  -1.688  -6.590  -30.312  -1.688  -6.590  -30.312  H1   L2D  32  
L2D  H2   H2   H   0  1  N  N  N  -0.248  -8.469  -31.039  -0.248  -8.469  -31.039  H2   L2D  33  
L2D  H3   H3   H   0  1  N  N  N   0.461  -8.627  -33.404   0.461  -8.627  -33.404  H3   L2D  34  
L2D  H4   H4   H   0  1  N  N  N  -0.294  -6.909  -35.016  -0.294  -6.909  -35.016  H4   L2D  35  
L2D  H5   H5   H   0  1  N  N  N  -2.162  -3.851  -31.290  -2.162  -3.851  -31.290  H5   L2D  36  
L2D  H6   H6   H   0  1  N  N  N  -3.619  -4.891  -31.445  -3.619  -4.891  -31.445  H6   L2D  37  
L2D  H7   H7   H   0  1  N  N  N  -4.947  -4.615  -33.531  -4.947  -4.615  -33.531  H7   L2D  38  
L2D  H8   H8   H   0  1  N  N  N  -3.755  -5.959  -33.539  -3.755  -5.959  -33.539  H8   L2D  39  
L2D  H9   H9   H   0  1  N  N  N  -2.581  -2.135  -32.352  -2.581  -2.135  -32.352  H9   L2D  40  
L2D  H10  H10  H   0  1  N  N  N  -5.415  -2.908  -33.275  -5.415  -2.908  -33.275  H10  L2D  41  
L2D  H11  H11  H   0  1  N  N  N  -4.819  -2.974  -31.582  -4.819  -2.974  -31.582  H11  L2D  42  
L2D  H12  H12  H   0  1  N  N  N  -4.313  -0.545  -31.661  -4.313  -0.545  -31.661  H12  L2D  43  
L2D  H13  H13  H   0  1  N  N  N  -6.045  -0.854  -32.023  -6.045  -0.854  -32.023  H13  L2D  44  
L2D  H14  H14  H   0  1  N  N  N  -5.064   0.816  -33.614  -5.064   0.816  -33.614  H14  L2D  45  
L2D  H15  H15  H   0  1  N  N  N  -5.568  -0.681  -34.470  -5.568  -0.681  -34.470  H15  L2D  46  
L2D  H16  H16  H   0  1  N  N  N  -2.717  -0.037  -33.506  -2.717  -0.037  -33.506  H16  L2D  47  
L2D  H17  H17  H   0  1  N  N  N  -3.292   0.047  -35.205  -3.292   0.047  -35.205  H17  L2D  48  
L2D  H18  H18  H   0  1  N  N  N  -3.880  -2.395  -35.110  -3.880  -2.395  -35.110  H18  L2D  49  
L2D  H19  H19  H   0  1  N  N  N  -0.425  -0.538  -34.594  -0.425  -0.538  -34.594  H19  L2D  50  
L2D  H20  H20  H   0  1  N  N  N  -1.478  -0.902  -33.186  -1.478  -0.902  -33.186  H20  L2D  51  
L2D  H21  H21  H   0  1  N  N  N  -1.510  -0.578  -36.279  -1.510  -0.578  -36.279  H21  L2D  52  
L2D  H22  H22  H   0  1  N  N  N  -2.442  -1.994  -36.875  -2.442  -1.994  -36.875  H22  L2D  53  
L2D  H23  H23  H   0  1  N  N  N   0.363  -0.655  -37.935   0.363  -0.655  -37.935  H23  L2D  54  
L2D  H24  H24  H   0  1  N  N  N   2.440  -1.822  -38.650   2.440  -1.822  -38.650  H24  L2D  55  
L2D  H25  H25  H   0  1  N  N  N   2.851  -4.143  -37.870   2.851  -4.143  -37.870  H25  L2D  56  
L2D  H26  H26  H   0  1  N  N  N   1.205  -5.239  -36.382   1.205  -5.239  -36.382  H26  L2D  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L2D  CAH  CAL  DOUB  Y  N   1  
L2D  CAH  CAF  SING  Y  N   2  
L2D  CAL  CAZ  SING  Y  N   3  
L2D  CAF  CAJ  DOUB  Y  N   4  
L2D  CAZ  NAV  DOUB  Y  N   5  
L2D  CAZ  CAT  SING  N  N   6  
L2D  CAJ  NAV  SING  Y  N   7  
L2D  NAV  FE   SING  N  N   8  
L2D  CAT  NBD  SING  N  N   9  
L2D  OXT  C    SING  N  N  10  
L2D  OXT  FE   SING  N  N  11  
L2D  O    C    DOUB  N  N  12  
L2D  C    CA   SING  N  N  13  
L2D  NBD  FE   SING  N  N  14  
L2D  NBD  CBB  SING  N  N  15  
L2D  NBD  CAR  SING  N  N  16  
L2D  FE   NAU  SING  N  N  17  
L2D  FE   OAD  SING  N  N  18  
L2D  FE   N    SING  N  N  19  
L2D  CBB  CAP  SING  N  N  20  
L2D  CBB  CBA  SING  N  N  21  
L2D  CAP  CAN  SING  N  N  22  
L2D  CAR  CAX  SING  N  N  23  
L2D  CAI  NAU  DOUB  Y  N  24  
L2D  CAI  CAE  SING  Y  N  25  
L2D  CA   N    SING  N  N  26  
L2D  CAN  CAM  SING  N  N  27  
L2D  NAU  CAY  SING  Y  N  28  
L2D  OAD  CAX  SING  N  N  29  
L2D  CAX  OAB  DOUB  N  N  30  
L2D  N    CBA  SING  N  N  31  
L2D  N    CAS  SING  N  N  32  
L2D  CAE  CAG  DOUB  Y  N  33  
L2D  CBA  CAO  SING  N  N  34  
L2D  CAO  CAM  SING  N  N  35  
L2D  CAY  CAS  SING  N  N  36  
L2D  CAY  CAK  DOUB  Y  N  37  
L2D  CAG  CAK  SING  Y  N  38  
L2D  CAK  H1   SING  N  N  39  
L2D  CAG  H2   SING  N  N  40  
L2D  CAE  H3   SING  N  N  41  
L2D  CAI  H4   SING  N  N  42  
L2D  CAS  H5   SING  N  N  43  
L2D  CAS  H6   SING  N  N  44  
L2D  CA   H7   SING  N  N  45  
L2D  CA   H8   SING  N  N  46  
L2D  CBA  H9   SING  N  N  47  
L2D  CAO  H10  SING  N  N  48  
L2D  CAO  H11  SING  N  N  49  
L2D  CAM  H12  SING  N  N  50  
L2D  CAM  H13  SING  N  N  51  
L2D  CAN  H14  SING  N  N  52  
L2D  CAN  H15  SING  N  N  53  
L2D  CAP  H16  SING  N  N  54  
L2D  CAP  H17  SING  N  N  55  
L2D  CBB  H18  SING  N  N  56  
L2D  CAR  H19  SING  N  N  57  
L2D  CAR  H20  SING  N  N  58  
L2D  CAT  H21  SING  N  N  59  
L2D  CAT  H22  SING  N  N  60  
L2D  CAL  H23  SING  N  N  61  
L2D  CAH  H24  SING  N  N  62  
L2D  CAF  H25  SING  N  N  63  
L2D  CAJ  H26  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L2D  SMILES            ACDLabs               12.01  "O=C6O[Fe]2587OC(=O)CN8(Cc1n2cccc1)C3CCCCC3N7(Cc4ccccn45)C6"  
L2D  InChI             InChI                 1.03   "InChI=1S/C22H28N4O4.Fe/c27-21(28)15-25(13-17-7-3-5-11-23-17)19-9-1-2-10-20(19)26(16-22(29)30)14-18-8-4-6-12-24-18;/h3-8,11-12,19-20H,1-2,9-10,13-16H2,(H,27,28)(H,29,30);/q;+2/p-2/t19-,20-;/m1./s1"  
L2D  InChIKey          InChI                 1.03   RHFVCFXUQWXGET-GZJHNZOKSA-L  
L2D  SMILES_CANONICAL  CACTVS                3.370  "O=C1CN|23Cc4ccccn4|[Fe]|5|6|2(O1)OC(=O)CN|5(Cc7ccccn|67)[C@@H]8CCCC[C@@H]38"  
L2D  SMILES            CACTVS                3.370  "O=C1CN|23Cc4ccccn4|[Fe]|5|6|2(O1)OC(=O)CN|5(Cc7ccccn|67)[CH]8CCCC[CH]38"  
L2D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1CC[C@@H]2[C@@H](C1)[N]34CC5=[N]([Fe]367([N]2(CC8=CC=CC=[N]68)CC(=O)O7)OC(=O)C4)C=CC=C5"  
L2D  SMILES            "OpenEye OEToolkits"  1.7.6  "C1CCC2C(C1)[N]34CC5=[N]([Fe]367([N]2(CC8=CC=CC=[N]68)CC(=O)O7)OC(=O)C4)C=CC=C5"  
#
_pdbx_chem_comp_identifier.comp_id          L2D
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "{2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron (non-preferred name)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L2D  "Create component"  2012-02-16  RCSB  
L2D  "Modify synonyms"   2012-03-14  RCSB  
L2D  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     L2D
_pdbx_chem_comp_synonyms.name        "Fe(1R,2R)-N,N'-Bis(2-pyridylmethyl)-N,N'-dicarboxymethyl-1,2-cyclohexanediamine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
