data_KHD
# 
_chem_comp.id                                    KHD 
_chem_comp.name                                  "N-(3-{[2-amino-3-(4-phenoxyphenyl)pyridin-4-yl]oxy}phenyl)propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H23 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-12-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        425.479 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KHD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6N9P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KHD N3  N1  N 0 1 Y N N N N N 18.161 5.151  0.700  1.314  -4.246 0.393  N3  KHD 1  
KHD C4  C1  C 0 1 Y N N N N N 18.075 5.287  2.036  0.162  -3.697 0.041  C4  KHD 2  
KHD C5  C2  C 0 1 Y N N N N N 19.153 5.772  2.770  -0.014 -2.310 0.109  C5  KHD 3  
KHD C6  C3  C 0 1 Y N N N N N 20.316 6.137  2.098  1.051  -1.516 0.557  C6  KHD 4  
KHD C8  C4  C 0 1 Y N N N N N 18.959 5.895  4.249  -1.302 -1.692 -0.286 C8  KHD 5  
KHD C10 C5  C 0 1 Y N N N N N 18.509 4.861  6.393  -2.559 -0.264 -1.751 C10 KHD 6  
KHD C13 C6  C 0 1 Y N N N N N 18.958 7.150  4.869  -2.458 -1.958 0.447  C13 KHD 7  
KHD C15 C7  C 0 1 Y N N N N N 17.166 6.873  8.813  -5.366 1.056  -0.639 C15 KHD 8  
KHD C17 C8  C 0 1 Y N N N N N 14.963 7.790  8.434  -7.103 2.630  -0.138 C17 KHD 9  
KHD C20 C9  C 0 1 Y N N N N N 17.090 7.274  10.138 -4.600 1.573  0.396  C20 KHD 10 
KHD C22 C10 C 0 1 Y N N N N N 22.498 7.170  2.145  1.957  0.536  1.178  C22 KHD 11 
KHD C24 C11 C 0 1 Y N N N N N 24.561 6.996  0.889  2.896  1.772  3.008  C24 KHD 12 
KHD C26 C12 C 0 1 Y N N N N N 23.746 9.167  1.574  4.164  1.464  0.993  C26 KHD 13 
KHD O31 O1  O 0 1 N N N N N N 25.381 10.736 0.049  4.218  1.599  -1.664 O31 KHD 14 
KHD C29 C13 C 0 1 N N N N N N 24.671 11.261 0.889  5.286  1.677  -1.094 C29 KHD 15 
KHD C30 C14 C 0 1 N N N N N N 24.691 12.759 1.122  6.561  1.774  -1.892 C30 KHD 16 
KHD C32 C15 C 0 1 N N N N N N 23.866 13.502 0.102  6.230  1.753  -3.385 C32 KHD 17 
KHD N28 N2  N 0 1 N N N N N N 23.851 10.565 1.658  5.332  1.677  0.253  N28 KHD 18 
KHD C27 C16 C 0 1 Y N N N N N 22.659 8.555  2.188  3.113  0.745  0.441  C27 KHD 19 
KHD C23 C17 C 0 1 Y N N N N N 23.458 6.382  1.504  1.851  1.051  2.462  C23 KHD 20 
KHD C25 C18 C 0 1 Y N N N N N 24.709 8.386  0.929  4.050  1.982  2.277  C25 KHD 21 
KHD O21 O2  O 0 1 N N N N N N 21.400 6.626  2.769  0.926  -0.168 0.640  O21 KHD 22 
KHD N7  N3  N 0 1 N N N N N N 16.913 4.937  2.647  -0.879 -4.503 -0.401 N7  KHD 23 
KHD C2  C19 C 0 1 Y N N N N N 19.273 5.495  0.035  2.332  -3.520 0.819  C2  KHD 24 
KHD C1  C20 C 0 1 Y N N N N N 20.378 5.993  0.715  2.239  -2.147 0.915  C1  KHD 25 
KHD C9  C21 C 0 1 Y N N N N N 18.722 4.756  5.018  -1.359 -0.838 -1.387 C9  KHD 26 
KHD C11 C22 C 0 1 Y N N N N N 18.517 6.115  7.006  -3.710 -0.536 -1.023 C11 KHD 27 
KHD C12 C23 C 0 1 Y N N N N N 18.743 7.260  6.242  -3.655 -1.381 0.077  C12 KHD 28 
KHD O14 O3  O 0 1 N N N N N N 18.296 6.225  8.354  -4.891 0.026  -1.388 O14 KHD 29 
KHD C16 C24 C 0 1 Y N N N N N 16.092 7.136  7.963  -6.620 1.587  -0.904 C16 KHD 30 
KHD C18 C25 C 0 1 Y N N N N N 14.894 8.188  9.764  -6.333 3.152  0.886  C18 KHD 31 
KHD C19 C26 C 0 1 Y N N N N N 15.960 7.931  10.614 -5.085 2.620  1.156  C19 KHD 32 
KHD H1  H1  H 0 1 N N N N N N 18.338 3.972  6.983  -2.605 0.394  -2.606 H1  KHD 33 
KHD H2  H2  H 0 1 N N N N N N 19.125 8.039  4.279  -2.416 -2.616 1.302  H2  KHD 34 
KHD H3  H3  H 0 1 N N N N N N 14.137 7.990  7.767  -8.077 3.048  -0.346 H3  KHD 35 
KHD H4  H4  H 0 1 N N N N N N 17.915 7.075  10.806 -3.626 1.158  0.607  H4  KHD 36 
KHD H5  H5  H 0 1 N N N N N N 25.299 6.392  0.382  2.810  2.176  4.006  H5  KHD 37 
KHD H6  H6  H 0 1 N N N N N N 25.731 13.113 1.064  7.073  2.704  -1.646 H6  KHD 38 
KHD H7  H7  H 0 1 N N N N N N 24.288 12.968 2.124  7.205  0.928  -1.651 H7  KHD 39 
KHD H8  H8  H 0 1 N N N N N N 23.910 14.581 0.310  5.586  2.599  -3.627 H8  KHD 40 
KHD H9  H9  H 0 1 N N N N N N 24.264 13.306 -0.905 7.152  1.823  -3.963 H9  KHD 41 
KHD H10 H10 H 0 1 N N N N N N 22.822 13.160 0.156  5.717  0.824  -3.632 H10 KHD 42 
KHD H11 H11 H 0 1 N N N N N N 23.285 11.052 2.324  6.175  1.824  0.709  H11 KHD 43 
KHD H12 H12 H 0 1 N N N N N N 21.929 9.160  2.705  3.196  0.348  -0.560 H12 KHD 44 
KHD H13 H13 H 0 1 N N N N N N 23.352 5.307  1.482  0.951  0.889  3.036  H13 KHD 45 
KHD H14 H14 H 0 1 N N N N N N 25.564 8.854  0.463  4.865  2.546  2.706  H14 KHD 46 
KHD H15 H15 H 0 1 N N N N N N 16.261 4.612  1.962  -0.761 -5.464 -0.450 H15 KHD 47 
KHD H16 H16 H 0 1 N N N N N N 17.091 4.210  3.310  -1.724 -4.104 -0.660 H16 KHD 48 
KHD H17 H17 H 0 1 N N N N N N 19.310 5.384  -1.039 3.253  -4.010 1.096  H17 KHD 49 
KHD H18 H18 H 0 1 N N N N N N 21.274 6.265  0.177  3.080  -1.567 1.265  H18 KHD 50 
KHD H19 H19 H 0 1 N N N N N N 18.703 3.785  4.546  -0.464 -0.626 -1.953 H19 KHD 51 
KHD H20 H20 H 0 1 N N N N N N 18.751 8.231  6.714  -4.551 -1.587 0.644  H20 KHD 52 
KHD H21 H21 H 0 1 N N N N N N 16.140 6.828  6.929  -7.218 1.186  -1.709 H21 KHD 53 
KHD H22 H22 H 0 1 N N N N N N 14.015 8.695  10.134 -6.706 3.976  1.475  H22 KHD 54 
KHD H23 H23 H 0 1 N N N N N N 15.912 8.242  11.647 -4.490 3.023  1.961  H23 KHD 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KHD C2  N3  DOUB Y N 1  
KHD C2  C1  SING Y N 2  
KHD O31 C29 DOUB N N 3  
KHD C32 C30 SING N N 4  
KHD N3  C4  SING Y N 5  
KHD C1  C6  DOUB Y N 6  
KHD C29 C30 SING N N 7  
KHD C29 N28 SING N N 8  
KHD C24 C25 DOUB Y N 9  
KHD C24 C23 SING Y N 10 
KHD C25 C26 SING Y N 11 
KHD C23 C22 DOUB Y N 12 
KHD C26 N28 SING N N 13 
KHD C26 C27 DOUB Y N 14 
KHD C4  N7  SING N N 15 
KHD C4  C5  DOUB Y N 16 
KHD C6  O21 SING N N 17 
KHD C6  C5  SING Y N 18 
KHD C22 C27 SING Y N 19 
KHD C22 O21 SING N N 20 
KHD C5  C8  SING N N 21 
KHD C8  C13 DOUB Y N 22 
KHD C8  C9  SING Y N 23 
KHD C13 C12 SING Y N 24 
KHD C9  C10 DOUB Y N 25 
KHD C12 C11 DOUB Y N 26 
KHD C10 C11 SING Y N 27 
KHD C11 O14 SING N N 28 
KHD C16 C17 DOUB Y N 29 
KHD C16 C15 SING Y N 30 
KHD O14 C15 SING N N 31 
KHD C17 C18 SING Y N 32 
KHD C15 C20 DOUB Y N 33 
KHD C18 C19 DOUB Y N 34 
KHD C20 C19 SING Y N 35 
KHD C10 H1  SING N N 36 
KHD C13 H2  SING N N 37 
KHD C17 H3  SING N N 38 
KHD C20 H4  SING N N 39 
KHD C24 H5  SING N N 40 
KHD C30 H6  SING N N 41 
KHD C30 H7  SING N N 42 
KHD C32 H8  SING N N 43 
KHD C32 H9  SING N N 44 
KHD C32 H10 SING N N 45 
KHD N28 H11 SING N N 46 
KHD C27 H12 SING N N 47 
KHD C23 H13 SING N N 48 
KHD C25 H14 SING N N 49 
KHD N7  H15 SING N N 50 
KHD N7  H16 SING N N 51 
KHD C2  H17 SING N N 52 
KHD C1  H18 SING N N 53 
KHD C9  H19 SING N N 54 
KHD C12 H20 SING N N 55 
KHD C16 H21 SING N N 56 
KHD C18 H22 SING N N 57 
KHD C19 H23 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KHD SMILES           ACDLabs              12.01 "n4c(N)c(c1ccc(cc1)Oc2ccccc2)c(Oc3cc(NC(=O)CC)ccc3)cc4"                                                                                                      
KHD InChI            InChI                1.03  "InChI=1S/C26H23N3O3/c1-2-24(30)29-19-7-6-10-22(17-19)32-23-15-16-28-26(27)25(23)18-11-13-21(14-12-18)31-20-8-4-3-5-9-20/h3-17H,2H2,1H3,(H2,27,28)(H,29,30)" 
KHD InChIKey         InChI                1.03  RTLWGNQEQNXZRG-UHFFFAOYSA-N                                                                                                                                  
KHD SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cccc(Oc2ccnc(N)c2c3ccc(Oc4ccccc4)cc3)c1"                                                                                                          
KHD SMILES           CACTVS               3.385 "CCC(=O)Nc1cccc(Oc2ccnc(N)c2c3ccc(Oc4ccccc4)cc3)c1"                                                                                                          
KHD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cccc(c1)Oc2ccnc(c2c3ccc(cc3)Oc4ccccc4)N"                                                                                                          
KHD SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cccc(c1)Oc2ccnc(c2c3ccc(cc3)Oc4ccccc4)N"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KHD "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-{[2-amino-3-(4-phenoxyphenyl)pyridin-4-yl]oxy}phenyl)propanamide"   
KHD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[3-[2-azanyl-3-(4-phenoxyphenyl)pyridin-4-yl]oxyphenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KHD "Create component" 2018-12-05 RCSB 
KHD "Initial release"  2019-02-06 RCSB 
KHD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KHD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C32 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
