data_GJD
# 
_chem_comp.id                                    GJD 
_chem_comp.name                                  "4-amino-2-[(3S)-3-(propanoylamino)pyrrolidin-1-yl]pyrimidine-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        278.310 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GJD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DI1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GJD C2  C1  C 0 1 Y N N N N N -14.732 -6.710  -1.798 -0.862 0.821  0.438  C2  GJD 1  
GJD C4  C2  C 0 1 Y N N N N N -16.130 -5.714  -0.240 -3.097 0.793  -0.129 C4  GJD 2  
GJD C5  C3  C 0 1 Y N N N N N -16.995 -5.450  -1.290 -3.110 -0.605 0.070  C5  GJD 3  
GJD C6  C4  C 0 1 Y N N N N N -16.624 -5.810  -2.595 -1.918 -1.229 0.454  C6  GJD 4  
GJD CAT C5  C 0 1 N N N N N N -11.895 -13.421 -0.306 5.742  -2.506 -0.362 CAT GJD 5  
GJD CAS C6  C 0 1 N N N N N N -11.860 -12.336 -1.235 4.800  -1.567 -1.117 CAS GJD 6  
GJD CAQ C7  C 0 1 N N N N N N -11.455 -10.966 -1.091 4.173  -0.598 -0.148 CAQ GJD 7  
GJD OAR O1  O 0 1 N N N N N N -10.442 -10.712 -0.382 4.452  -0.653 1.031  OAR GJD 8  
GJD NAN N1  N 0 1 N N N N N N -12.048 -10.006 -1.814 3.302  0.330  -0.591 NAN GJD 9  
GJD CAL C8  C 0 1 N N S N N N -11.588 -8.606  -1.784 2.693  1.272  0.351  CAL GJD 10 
GJD CAM C9  C 0 1 N N N N N N -12.629 -7.721  -1.013 1.426  0.659  0.976  CAM GJD 11 
GJD CAK C10 C 0 1 N N N N N N -11.634 -8.063  -3.243 2.203  2.536  -0.394 CAK GJD 12 
GJD CAJ C11 C 0 1 N N N N N N -13.164 -7.758  -3.479 0.699  2.243  -0.621 CAJ GJD 13 
GJD NAI N2  N 0 1 N N N N N N -13.603 -7.346  -2.071 0.296  1.546  0.627  NAI GJD 14 
GJD N3  N3  N 0 1 Y N N N N N -14.940 -6.348  -0.532 -1.963 1.456  0.064  N3  GJD 15 
GJD NAH N4  N 0 1 N N N N N N -16.373 -5.447  1.032  -4.241 1.457  -0.518 NAH GJD 16 
GJD N1  N5  N 0 1 Y N N N N N -15.442 -6.436  -2.800 -0.836 -0.493 0.629  N1  GJD 17 
GJD CAG C12 C 0 1 N N N N N N -18.344 -4.747  -1.104 -4.342 -1.386 -0.131 CAG GJD 18 
GJD OAO O2  O 0 1 N N N N N N -18.469 -4.145  -0.058 -5.341 -0.845 -0.566 OAO GJD 19 
GJD NAP N6  N 0 1 N N N N N N -19.202 -4.840  -2.083 -4.362 -2.700 0.166  NAP GJD 20 
GJD H1  H1  H 0 1 N N N N N N -17.276 -5.589  -3.427 -1.885 -2.297 0.610  H1  GJD 21 
GJD H2  H2  H 0 1 N N N N N N -12.273 -14.323 -0.809 5.179  -3.058 0.391  H2  GJD 22 
GJD H3  H3  H 0 1 N N N N N N -10.880 -13.611 0.074  6.195  -3.207 -1.062 H3  GJD 23 
GJD H4  H4  H 0 1 N N N N N N -12.558 -13.164 0.533  6.523  -1.922 0.125  H4  GJD 24 
GJD H5  H5  H 0 1 N N N N N N -12.899 -12.264 -1.589 5.363  -1.015 -1.870 H5  GJD 25 
GJD H6  H6  H 0 1 N N N N N N -11.221 -12.711 -2.048 4.018  -2.150 -1.604 H6  GJD 26 
GJD H7  H7  H 0 1 N N N N N N -12.827 -10.247 -2.392 3.079  0.375  -1.534 H7  GJD 27 
GJD H8  H8  H 0 1 N N N N N N -10.582 -8.502  -1.351 3.406  1.543  1.129  H8  GJD 28 
GJD H9  H9  H 0 1 N N N N N N -12.148 -6.829  -0.585 1.256  -0.338 0.568  H9  GJD 29 
GJD H10 H10 H 0 1 N N N N N N -13.118 -8.294  -0.212 1.537  0.602  2.059  H10 GJD 30 
GJD H11 H11 H 0 1 N N N N N N -11.270 -8.819  -3.955 2.335  3.423  0.224  H11 GJD 31 
GJD H12 H12 H 0 1 N N N N N N -11.032 -7.148  -3.340 2.724  2.649  -1.345 H12 GJD 32 
GJD H13 H13 H 0 1 N N N N N N -13.306 -6.941  -4.201 0.140  3.171  -0.741 H13 GJD 33 
GJD H14 H14 H 0 1 N N N N N N -13.705 -8.651  -3.825 0.559  1.594  -1.486 H14 GJD 34 
GJD H15 H15 H 0 1 N N N N N N -15.610 -5.769  1.592  -5.043 0.956  -0.735 H15 GJD 35 
GJD H16 H16 H 0 1 N N N N N N -16.481 -4.460  1.151  -4.243 2.425  -0.576 H16 GJD 36 
GJD H17 H17 H 0 1 N N N N N N -20.087 -4.379  -2.018 -3.566 -3.132 0.512  H17 GJD 37 
GJD H18 H18 H 0 1 N N N N N N -18.974 -5.372  -2.898 -5.174 -3.215 0.033  H18 GJD 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GJD CAJ CAK SING N N 1  
GJD CAJ NAI SING N N 2  
GJD CAK CAL SING N N 3  
GJD N1  C6  DOUB Y N 4  
GJD N1  C2  SING Y N 5  
GJD C6  C5  SING Y N 6  
GJD NAP CAG SING N N 7  
GJD NAI C2  SING N N 8  
GJD NAI CAM SING N N 9  
GJD NAN CAL SING N N 10 
GJD NAN CAQ SING N N 11 
GJD C2  N3  DOUB Y N 12 
GJD CAL CAM SING N N 13 
GJD C5  CAG SING N N 14 
GJD C5  C4  DOUB Y N 15 
GJD CAS CAQ SING N N 16 
GJD CAS CAT SING N N 17 
GJD CAG OAO DOUB N N 18 
GJD CAQ OAR DOUB N N 19 
GJD N3  C4  SING Y N 20 
GJD C4  NAH SING N N 21 
GJD C6  H1  SING N N 22 
GJD CAT H2  SING N N 23 
GJD CAT H3  SING N N 24 
GJD CAT H4  SING N N 25 
GJD CAS H5  SING N N 26 
GJD CAS H6  SING N N 27 
GJD NAN H7  SING N N 28 
GJD CAL H8  SING N N 29 
GJD CAM H9  SING N N 30 
GJD CAM H10 SING N N 31 
GJD CAK H11 SING N N 32 
GJD CAK H12 SING N N 33 
GJD CAJ H13 SING N N 34 
GJD CAJ H14 SING N N 35 
GJD NAH H15 SING N N 36 
GJD NAH H16 SING N N 37 
GJD NAP H17 SING N N 38 
GJD NAP H18 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GJD SMILES           ACDLabs              12.01 "c1(nc(N)c(C(=O)N)cn1)N2CC(NC(CC)=O)CC2"                                                                                                    
GJD InChI            InChI                1.03  "InChI=1S/C12H18N6O2/c1-2-9(19)16-7-3-4-18(6-7)12-15-5-8(11(14)20)10(13)17-12/h5,7H,2-4,6H2,1H3,(H2,14,20)(H,16,19)(H2,13,15,17)/t7-/m0/s1" 
GJD InChIKey         InChI                1.03  RFNYKYSEMVFRHS-ZETCQYMHSA-N                                                                                                                 
GJD SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N[C@H]1CCN(C1)c2ncc(C(N)=O)c(N)n2"                                                                                                  
GJD SMILES           CACTVS               3.385 "CCC(=O)N[CH]1CCN(C1)c2ncc(C(N)=O)c(N)n2"                                                                                                   
GJD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N[C@H]1CCN(C1)c2ncc(c(n2)N)C(=O)N"                                                                                                  
GJD SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)NC1CCN(C1)c2ncc(c(n2)N)C(=O)N"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GJD "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-2-[(3S)-3-(propanoylamino)pyrrolidin-1-yl]pyrimidine-5-carboxamide"     
GJD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-azanyl-2-[(3~{S})-3-(propanoylamino)pyrrolidin-1-yl]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GJD "Create component" 2018-05-23 RCSB 
GJD "Initial release"  2018-10-17 RCSB 
GJD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GJD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAT 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
