data_GHD
# 
_chem_comp.id                                    GHD 
_chem_comp.name                                  "(2~{R},4~{S},5~{S},6~{S})-5-acetamido-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-2-[[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{R},5~{R})-1,2,4,5-tetrakis(oxidanyl)-6-oxidanylidene-hexan-3-yl]oxy-oxan-2-yl]methoxy]oxane-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H39 N O19" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-02 
_chem_comp.pdbx_modified_date                    2022-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        633.551 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GHD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QXO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GHD N1  N1  N 0 1 N N N -7.701  6.996  24.658 5.023  -0.478 -1.557 N1  GHD 1  
GHD C4  C1  C 0 1 N N S -6.582  8.643  23.076 3.656  0.041  0.405  C4  GHD 2  
GHD C5  C2  C 0 1 N N R -7.657  8.935  22.048 4.703  -0.556 1.349  C5  GHD 3  
GHD C6  C3  C 0 1 N N R -7.762  10.299 21.292 4.008  -1.119 2.590  C6  GHD 4  
GHD C7  C4  C 0 1 N N N -8.807  10.289 20.186 5.055  -1.716 3.533  C7  GHD 5  
GHD C8  C5  C 0 1 N N R -4.402  9.249  23.581 1.930  1.701  0.287  C8  GHD 6  
GHD C10 C6  C 0 1 N N R -3.038  8.412  20.550 -0.677 -0.956 0.462  C10 GHD 7  
GHD C13 C7  C 0 1 N N R 0.637   9.481  21.801 -4.380 2.184  -0.264 C13 GHD 8  
GHD C15 C8  C 0 1 N N R 0.535   7.047  22.743 -5.995 0.316  0.113  C15 GHD 9  
GHD C17 C9  C 0 1 N N N 2.671   5.861  23.448 -7.582 -1.523 0.611  C17 GHD 10 
GHD C20 C10 C 0 1 N N R -3.369  8.302  19.025 -0.116 -1.841 -0.654 C20 GHD 11 
GHD C21 C11 C 0 1 N N N -3.376  10.410 23.484 1.241  2.767  1.100  C21 GHD 12 
GHD C22 C12 C 0 1 N N N -4.527  8.794  25.028 2.555  2.333  -0.959 C22 GHD 13 
GHD C1  C13 C 0 1 N N N -9.680  5.674  24.389 6.764  -1.320 -3.100 C1  GHD 14 
GHD C2  C14 C 0 1 N N N -8.440  6.273  23.794 6.076  -0.206 -2.354 C2  GHD 15 
GHD O1  O1  O 0 1 N N N -8.060  5.938  22.670 6.470  0.935  -2.470 O1  GHD 16 
GHD C3  C15 C 0 1 N N S -7.047  8.299  24.485 4.351  0.606  -0.836 C3  GHD 17 
GHD O2  O2  O 0 1 N N N -7.357  7.921  21.096 5.406  -1.604 0.679  O2  GHD 18 
GHD O3  O3  O 0 1 N N N -8.092  11.348 22.203 3.306  -0.071 3.260  O3  GHD 19 
GHD O4  O4  O 0 1 N N N -8.525  11.209 19.135 4.399  -2.345 4.636  O4  GHD 20 
GHD O5  O5  O 0 1 N N N -5.659  9.744  23.101 2.953  1.089  1.075  O5  GHD 21 
GHD O6  O6  O 0 1 N N N -3.850  8.100  22.854 0.977  0.712  -0.107 O6  GHD 22 
GHD C9  C16 C 0 1 N N N -4.159  7.916  21.441 0.425  -0.031 0.982  C9  GHD 23 
GHD O7  O7  O 0 1 N N N -1.829  7.669  20.850 -1.756 -0.172 -0.049 O7  GHD 24 
GHD C11 C17 C 0 1 N N S -0.788  7.928  19.915 -2.855 -0.942 -0.540 C11 GHD 25 
GHD O8  O8  O 0 1 N N N 0.457   7.438  20.390 -3.884 -0.064 -1.001 O8  GHD 26 
GHD C12 C18 C 0 1 N N S 1.012   7.982  21.632 -4.513 0.690  0.037  C12 GHD 27 
GHD O9  O9  O 0 1 N N N 0.673   10.187 20.555 -5.062 2.487  -1.483 O9  GHD 28 
GHD C14 C19 C 0 1 N N N 1.546   10.200 22.780 -2.900 2.546  -0.405 C14 GHD 29 
GHD O10 O10 O 0 1 N N N 2.189   11.321 22.175 -2.768 3.960  -0.561 O10 GHD 30 
GHD O11 O11 O 0 1 N N N -0.651  7.614  23.301 -6.624 1.069  1.152  O11 GHD 31 
GHD C16 C20 C 0 1 N N R 1.498   6.741  23.895 -6.129 -1.178 0.415  C16 GHD 32 
GHD O12 O12 O 0 1 N N N 0.739   6.111  24.938 -5.400 -1.491 1.604  O12 GHD 33 
GHD O13 O13 O 0 1 N N N 2.597   4.674  23.559 -7.956 -1.989 1.661  O13 GHD 34 
GHD C18 C21 C 0 1 N N R -1.082  7.220  18.596 -2.382 -1.826 -1.697 C18 GHD 35 
GHD O14 O14 O 0 1 N N N -0.354  7.857  17.552 -3.467 -2.638 -2.152 O14 GHD 36 
GHD C19 C22 C 0 1 N N S -2.588  7.197  18.289 -1.239 -2.721 -1.210 C19 GHD 37 
GHD O15 O15 O 0 1 N N N -3.109  5.897  18.580 -0.742 -3.498 -2.302 O15 GHD 38 
GHD O16 O16 O 0 1 N N N -4.776  8.075  18.858 0.408  -1.017 -1.698 O16 GHD 39 
GHD O17 O17 O 0 1 N N N -2.370  10.365 24.134 1.936  3.824  1.547  O17 GHD 40 
GHD O18 O18 O 0 1 N N N -3.564  11.353 22.749 0.062  2.670  1.348  O18 GHD 41 
GHD C23 C23 C 0 1 N N S -5.915  8.365  25.524 3.304  1.254  -1.747 C23 GHD 42 
GHD O19 O19 O 0 1 N N N -5.779  7.082  26.146 2.380  0.261  -2.195 O19 GHD 43 
GHD H4  H1  H 0 1 N N N -7.579  6.580  25.559 4.708  -1.391 -1.464 H4  GHD 44 
GHD H6  H2  H 0 1 N N N -6.032  7.764  22.709 2.952  -0.736 0.106  H6  GHD 45 
GHD H7  H3  H 0 1 N N N -8.636  8.731  22.506 5.407  0.221  1.647  H7  GHD 46 
GHD H9  H4  H 0 1 N N N -6.782  10.505 20.837 3.304  -1.896 2.291  H9  GHD 47 
GHD H12 H5  H 0 1 N N N -9.782  10.548 20.625 5.650  -2.454 2.996  H12 GHD 48 
GHD H11 H6  H 0 1 N N N -8.854  9.276  19.760 5.706  -0.923 3.902  H11 GHD 49 
GHD H16 H7  H 0 1 N N N -2.868  9.475  20.775 -1.038 -1.584 1.277  H16 GHD 50 
GHD H19 H8  H 0 1 N N N -0.386  9.520  22.202 -4.819 2.760  0.551  H19 GHD 51 
GHD H24 H9  H 0 1 N N N 0.275   6.087  22.272 -6.475 0.538  -0.840 H24 GHD 52 
GHD H28 H10 H 0 1 N N N 3.561   6.312  23.034 -8.290 -1.354 -0.187 H28 GHD 53 
GHD H33 H11 H 0 1 N N N -3.104  9.263  18.561 0.678  -2.472 -0.255 H33 GHD 54 
GHD H35 H12 H 0 1 N N N -3.851  7.937  25.162 1.771  2.761  -1.582 H35 GHD 55 
GHD H36 H13 H 0 1 N N N -4.194  9.627  25.664 3.252  3.115  -0.660 H36 GHD 56 
GHD H3  H14 H 0 1 N N N -10.118 4.956  23.680 6.292  -1.450 -4.075 H3  GHD 57 
GHD H1  H15 H 0 1 N N N -9.424  5.155  25.324 7.816  -1.071 -3.236 H1  GHD 58 
GHD H2  H16 H 0 1 N N N -10.408 6.472  24.600 6.680  -2.246 -2.530 H2  GHD 59 
GHD H5  H17 H 0 1 N N N -7.777  9.070  24.772 5.085  1.353  -0.535 H5  GHD 60 
GHD H8  H18 H 0 1 N N N -7.546  7.069  21.470 4.840  -2.331 0.384  H8  GHD 61 
GHD H10 H19 H 0 1 N N N -7.451  11.373 22.904 3.871  0.656  3.555  H10 GHD 62 
GHD H13 H20 H 0 1 N N N -9.208  11.158 18.477 5.003  -2.746 5.276  H13 GHD 63 
GHD H15 H21 H 0 1 N N N -5.077  8.473  21.202 0.005  0.657  1.716  H15 GHD 64 
GHD H14 H22 H 0 1 N N N -4.320  6.845  21.248 1.209  -0.626 1.450  H14 GHD 65 
GHD H17 H23 H 0 1 N N N -0.717  9.009  19.723 -3.246 -1.570 0.261  H17 GHD 66 
GHD H18 H24 H 0 1 N N N 2.109   7.918  21.585 -4.033 0.468  0.990  H18 GHD 67 
GHD H20 H25 H 0 1 N N N 0.439   11.096 20.699 -4.723 2.009  -2.252 H20 GHD 68 
GHD H21 H26 H 0 1 N N N 0.946   10.550 23.633 -2.362 2.227  0.488  H21 GHD 69 
GHD H22 H27 H 0 1 N N N 2.314   9.497  23.136 -2.484 2.043  -1.278 H22 GHD 70 
GHD H23 H28 H 0 1 N N N 2.749   11.748 22.813 -1.862 4.254  -0.733 H23 GHD 71 
GHD H25 H29 H 0 1 N N N -0.973  7.054  23.997 -6.247 0.921  2.030  H25 GHD 72 
GHD H26 H30 H 0 1 N N N 1.906   7.694  24.263 -5.728 -1.755 -0.419 H26 GHD 73 
GHD H27 H31 H 0 1 N N N 1.004   5.202  25.019 -5.703 -1.014 2.388  H27 GHD 74 
GHD H29 H32 H 0 1 N N N -0.743  6.178  18.690 -2.030 -1.197 -2.515 H29 GHD 75 
GHD H30 H33 H 0 1 N N N 0.572   7.858  17.766 -4.228 -2.134 -2.471 H30 GHD 76 
GHD H31 H34 H 0 1 N N N -2.702  7.384  17.211 -1.605 -3.386 -0.427 H31 GHD 77 
GHD H32 H35 H 0 1 N N N -4.040  5.879  18.391 -1.403 -4.075 -2.708 H32 GHD 78 
GHD H34 H36 H 0 1 N N N -5.263  8.754  19.310 0.780  -1.512 -2.440 H34 GHD 79 
GHD H39 H37 H 0 1 N N N -1.842  11.134 23.955 1.451  4.482  2.064  H39 GHD 80 
GHD H37 H38 H 0 1 N N N -6.223  9.091  26.291 3.799  1.708  -2.606 H37 GHD 81 
GHD H38 H39 H 0 1 N N N -5.081  7.114  26.790 1.683  0.603  -2.773 H38 GHD 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GHD O14 C18 SING N N 1  
GHD C19 O15 SING N N 2  
GHD C19 C18 SING N N 3  
GHD C19 C20 SING N N 4  
GHD C18 C11 SING N N 5  
GHD O16 C20 SING N N 6  
GHD C20 C10 SING N N 7  
GHD O4  C7  SING N N 8  
GHD C11 O8  SING N N 9  
GHD C11 O7  SING N N 10 
GHD C7  C6  SING N N 11 
GHD O8  C12 SING N N 12 
GHD C10 O7  SING N N 13 
GHD C10 C9  SING N N 14 
GHD O9  C13 SING N N 15 
GHD O2  C5  SING N N 16 
GHD C6  C5  SING N N 17 
GHD C6  O3  SING N N 18 
GHD C9  O6  SING N N 19 
GHD C12 C13 SING N N 20 
GHD C12 C15 SING N N 21 
GHD C13 C14 SING N N 22 
GHD C5  C4  SING N N 23 
GHD O10 C14 SING N N 24 
GHD O1  C2  DOUB N N 25 
GHD C15 O11 SING N N 26 
GHD C15 C16 SING N N 27 
GHD O18 C21 DOUB N N 28 
GHD O6  C8  SING N N 29 
GHD C4  O5  SING N N 30 
GHD C4  C3  SING N N 31 
GHD O5  C8  SING N N 32 
GHD C17 O13 DOUB N N 33 
GHD C17 C16 SING N N 34 
GHD C21 C8  SING N N 35 
GHD C21 O17 SING N N 36 
GHD C8  C22 SING N N 37 
GHD C2  C1  SING N N 38 
GHD C2  N1  SING N N 39 
GHD C16 O12 SING N N 40 
GHD C3  N1  SING N N 41 
GHD C3  C23 SING N N 42 
GHD C22 C23 SING N N 43 
GHD C23 O19 SING N N 44 
GHD N1  H4  SING N N 45 
GHD C4  H6  SING N N 46 
GHD C5  H7  SING N N 47 
GHD C6  H9  SING N N 48 
GHD C7  H12 SING N N 49 
GHD C7  H11 SING N N 50 
GHD C10 H16 SING N N 51 
GHD C13 H19 SING N N 52 
GHD C15 H24 SING N N 53 
GHD C17 H28 SING N N 54 
GHD C20 H33 SING N N 55 
GHD C22 H35 SING N N 56 
GHD C22 H36 SING N N 57 
GHD C1  H3  SING N N 58 
GHD C1  H1  SING N N 59 
GHD C1  H2  SING N N 60 
GHD C3  H5  SING N N 61 
GHD O2  H8  SING N N 62 
GHD O3  H10 SING N N 63 
GHD O4  H13 SING N N 64 
GHD C9  H15 SING N N 65 
GHD C9  H14 SING N N 66 
GHD C11 H17 SING N N 67 
GHD C12 H18 SING N N 68 
GHD O9  H20 SING N N 69 
GHD C14 H21 SING N N 70 
GHD C14 H22 SING N N 71 
GHD O10 H23 SING N N 72 
GHD O11 H25 SING N N 73 
GHD C16 H26 SING N N 74 
GHD O12 H27 SING N N 75 
GHD C18 H29 SING N N 76 
GHD O14 H30 SING N N 77 
GHD C19 H31 SING N N 78 
GHD O15 H32 SING N N 79 
GHD O16 H34 SING N N 80 
GHD O17 H39 SING N N 81 
GHD C23 H37 SING N N 82 
GHD O19 H38 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GHD InChI            InChI                1.06  "InChI=1S/C23H39NO19/c1-7(28)24-13-8(29)2-23(22(38)39,43-20(13)15(34)10(31)4-26)40-6-12-16(35)17(36)18(37)21(41-12)42-19(11(32)5-27)14(33)9(30)3-25/h3,8-21,26-27,29-37H,2,4-6H2,1H3,(H,24,28)(H,38,39)/t8-,9-,10+,11+,12+,13-,14+,15+,16-,17-,18+,19-,20-,21-,23+/m0/s1" 
GHD InChIKey         InChI                1.06  VMWYCXKMRSTDSP-DKHYMJAUSA-N                                                                                                                                                                                                                                               
GHD SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@H]1[C@@H](O)C[C@@](OC[C@H]2O[C@@H](O[C@@H]([C@H](O)CO)[C@H](O)[C@@H](O)C=O)[C@H](O)[C@@H](O)[C@H]2O)(O[C@@H]1[C@H](O)[C@H](O)CO)C(O)=O"                                                                                                                        
GHD SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)C[C](OC[CH]2O[CH](O[CH]([CH](O)CO)[CH](O)[CH](O)C=O)[CH](O)[CH](O)[CH]2O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O"                                                                                                                                              
GHD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H]1[C@H](C[C@@](O[C@@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]([C@@H](CO)O)[C@@H]([C@H](C=O)O)O)O)O)O)O"                                                                                                                  
GHD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)OCC2C(C(C(C(O2)OC(C(CO)O)C(C(C=O)O)O)O)O)O)O"                                                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           GHD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},4~{S},5~{S},6~{S})-5-acetamido-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-2-[[(2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{R},5~{R})-1,2,4,5-tetrakis(oxidanyl)-6-oxidanylidene-hexan-3-yl]oxy-oxan-2-yl]methoxy]oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GHD "Create component"  2022-02-02 PDBE 
GHD "Modify descriptor" 2022-08-22 RCSB 
GHD "Initial release"   2022-12-07 RCSB 
# 
