data_FOD
# 
_chem_comp.id                                    FOD 
_chem_comp.name                                  "(2S)-2-amino-4-[1-(trans-4-hydroxycyclohexyl)-1H-1,2,3-triazol-4-yl]butanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H20 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        268.312 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FOD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CXG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FOD C5  C1  C 0 1 Y N N N N N -4.147 27.754 -42.829 -0.718 0.878  -0.041 C5  FOD 1  
FOD C6  C2  C 0 1 Y N N N N N -5.242 28.104 -43.561 0.507  0.508  -0.483 C6  FOD 2  
FOD C7  C3  C 0 1 N N N N N N -6.753 30.158 -43.503 2.812  0.524  0.510  C7  FOD 3  
FOD C8  C4  C 0 1 N N N N N N -7.547 30.578 -42.280 3.093  -0.928 0.903  C8  FOD 4  
FOD N2  N1  N 0 1 Y N N N N N -3.905 28.749 -41.935 -0.549 1.336  1.205  N2  FOD 5  
FOD C9  C5  C 0 1 N N N N N N -8.712 31.468 -42.702 4.602  -1.178 0.882  C9  FOD 6  
FOD C10 C6  C 0 1 N N N N N N -8.242 32.658 -43.506 5.144  -0.916 -0.524 C10 FOD 7  
FOD C11 C7  C 0 1 N N N N N N -7.395 32.227 -44.678 4.863  0.536  -0.916 C11 FOD 8  
FOD C12 C8  C 0 1 N N N N N N -6.217 31.375 -44.229 3.354  0.787  -0.896 C12 FOD 9  
FOD N3  N2  N 0 1 Y N N N N N -4.803 29.692 -42.084 0.697  1.256  1.513  N3  FOD 10 
FOD N4  N3  N 0 1 Y N N N N N -5.620 29.301 -43.081 1.367  0.765  0.530  N4  FOD 11 
FOD N   N4  N 0 1 N N N Y Y N -2.807 23.775 -44.121 -4.928 1.260  -0.899 N   FOD 12 
FOD CA  C9  C 0 1 N N S Y N N -3.131 24.017 -42.715 -4.353 -0.085 -0.763 CA  FOD 13 
FOD OXT O1  O 0 1 N Y N Y N Y -4.862 22.249 -42.773 -5.215 -2.306 -0.114 OXT FOD 14 
FOD CB  C10 C 0 1 N N N N N N -4.017 25.242 -42.556 -3.036 -0.001 0.012  CB  FOD 15 
FOD CG  C11 C 0 1 N N N N N N -3.274 26.540 -42.875 -2.015 0.795  -0.803 CG  FOD 16 
FOD O2  O2  O 0 1 N N N N N N -9.376 33.374 -44.000 6.553  -1.150 -0.543 O2  FOD 17 
FOD C   C12 C 0 1 N N N Y N Y -3.743 22.773 -42.087 -5.318 -0.971 -0.018 C   FOD 18 
FOD H1  H1  H 0 1 N N N N N N -5.706 27.540 -44.356 0.749  0.092  -1.450 H1  FOD 19 
FOD H12 H2  H 0 1 N N N N N N -7.409 29.593 -44.182 3.301  1.193  1.219  H12 FOD 20 
FOD H3  H3  H 0 1 N N N N N N -7.936 29.683 -41.772 2.707  -1.114 1.905  H3  FOD 21 
FOD H4  H4  H 0 1 N N N N N N -6.893 31.134 -41.593 2.604  -1.596 0.194  H4  FOD 22 
FOD H5  H5  H 0 1 N N N N N N -9.230 31.828 -41.801 5.091  -0.510 1.591  H5  FOD 23 
FOD H6  H6  H 0 1 N N N N N N -9.409 30.877 -43.314 4.802  -2.213 1.162  H6  FOD 24 
FOD H7  H7  H 0 1 N N N N N N -7.641 33.310 -42.855 4.655  -1.585 -1.232 H7  FOD 25 
FOD H8  H8  H 0 1 N N N N N N -7.014 33.122 -45.192 5.352  1.205  -0.208 H8  FOD 26 
FOD H9  H9  H 0 1 N N N N N N -8.016 31.642 -45.372 5.249  0.723  -1.918 H9  FOD 27 
FOD H10 H10 H 0 1 N N N N N N -5.634 31.057 -45.106 2.865  0.118  -1.604 H10 FOD 28 
FOD H11 H11 H 0 1 N N N N N N -5.574 31.957 -43.552 3.153  1.821  -1.176 H11 FOD 29 
FOD H   H12 H 0 1 N N N Y Y N -2.225 22.965 -44.195 -5.110 1.669  0.006  H   FOD 30 
FOD H2  H13 H 0 1 N Y N Y Y N -3.651 23.627 -44.637 -4.328 1.856  -1.450 H2  FOD 31 
FOD HA  H15 H 0 1 N N N Y N N -2.191 24.223 -42.181 -4.167 -0.502 -1.752 HA  FOD 32 
FOD HB1 H17 H 0 1 N N N N N N -4.377 25.286 -41.517 -3.207 0.497  0.966  HB1 FOD 33 
FOD HB2 H18 H 0 1 N N N N N N -4.875 25.149 -43.238 -2.655 -1.007 0.190  HB2 FOD 34 
FOD HG1 H19 H 0 1 N N N N N N -2.846 26.457 -43.885 -2.396 1.801  -0.981 H19 FOD 35 
FOD HG2 H20 H 0 1 N N N N N N -2.463 26.666 -42.142 -1.844 0.297  -1.758 H20 FOD 36 
FOD H21 H21 H 0 1 N N N N N N -9.918 33.651 -43.271 6.965  -1.003 -1.405 H21 FOD 37 
FOD O   O   O 0 1 N N N Y N Y -3.202 22.235 -40.996 -6.185 -0.479 0.666  O   FOD 38 
FOD HXT HXT H 0 1 N Y N Y N Y -5.162 21.461 -42.335 -5.857 -2.832 0.382  H13 FOD 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FOD C11 C12 SING N N 1  
FOD C11 C10 SING N N 2  
FOD C12 C7  SING N N 3  
FOD N   CA  SING N N 4  
FOD O2  C10 SING N N 5  
FOD C6  N4  SING Y N 6  
FOD C6  C5  DOUB Y N 7  
FOD C10 C9  SING N N 8  
FOD C7  N4  SING N N 9  
FOD C7  C8  SING N N 10 
FOD N4  N3  SING Y N 11 
FOD CG  C5  SING N N 12 
FOD CG  CB  SING N N 13 
FOD C5  N2  SING Y N 14 
FOD OXT C   SING N N 15 
FOD CA  CB  SING N N 16 
FOD CA  C   SING N N 17 
FOD C9  C8  SING N N 18 
FOD N3  N2  DOUB Y N 19 
FOD C6  H1  SING N N 20 
FOD C7  H12 SING N N 21 
FOD C8  H3  SING N N 22 
FOD C8  H4  SING N N 23 
FOD C9  H5  SING N N 24 
FOD C9  H6  SING N N 25 
FOD C10 H7  SING N N 26 
FOD C11 H8  SING N N 27 
FOD C11 H9  SING N N 28 
FOD C12 H10 SING N N 29 
FOD C12 H11 SING N N 30 
FOD N   H   SING N N 31 
FOD N   H2  SING N N 32 
FOD CA  HA  SING N N 33 
FOD CB  HB1 SING N N 34 
FOD CB  HB2 SING N N 35 
FOD CG  HG1 SING N N 36 
FOD CG  HG2 SING N N 37 
FOD O2  H21 SING N N 38 
FOD C   O   DOUB N N 39 
FOD OXT HXT SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FOD SMILES           ACDLabs              12.01 "c1(nnn(c1)C2CCC(CC2)O)CCC(N)C(O)=O"                                                                                        
FOD InChI            InChI                1.03  "InChI=1S/C12H20N4O3/c13-11(12(18)19)6-1-8-7-16(15-14-8)9-2-4-10(17)5-3-9/h7,9-11,17H,1-6,13H2,(H,18,19)/t9-,10-,11-/m0/s1" 
FOD InChIKey         InChI                1.03  UMDKTMNWTHWTPL-DCAQKATOSA-N                                                                                                 
FOD SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCc1cn(nn1)[C@H]2CC[C@H](O)CC2)C(O)=O"                                                                             
FOD SMILES           CACTVS               3.385 "N[CH](CCc1cn(nn1)[CH]2CC[CH](O)CC2)C(O)=O"                                                                                 
FOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1c(nnn1C2CCC(CC2)O)CC[C@@H](C(=O)O)N"                                                                                     
FOD SMILES           "OpenEye OEToolkits" 2.0.6 "c1c(nnn1C2CCC(CC2)O)CCC(C(=O)O)N"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FOD "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-4-[1-(trans-4-hydroxycyclohexyl)-1H-1,2,3-triazol-4-yl]butanoic acid" 
FOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-4-[1-(4-oxidanylcyclohexyl)-1,2,3-triazol-4-yl]butanoic acid"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FOD "Create component" 2018-04-11 RCSB 
FOD "Modify formula"   2018-11-30 RCSB 
FOD "Modify atom id"   2018-11-30 RCSB 
FOD "Initial release"  2019-02-20 RCSB 
FOD "Modify backbone"  2023-11-03 PDBE 
FOD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            FOD 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
