data_FND
# 
_chem_comp.id                                    FND 
_chem_comp.name                                  "11-[(2S)-butan-2-yl]-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H44 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-10 
_chem_comp.pdbx_modified_date                    2018-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        612.765 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FND 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CJ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FND C11 C1  C 0 1 Y N N 0.320  10.140 -4.187 -2.392  -2.152 -0.471 C11 FND 1  
FND C12 C2  C 0 1 Y N N 0.477  9.622  -5.474 -1.910  -3.007 0.525  C12 FND 2  
FND C13 C3  C 0 1 Y N N 1.743  9.291  -5.946 -0.654  -2.803 1.059  C13 FND 3  
FND C14 C4  C 0 1 Y N N 2.926  9.501  -5.079 0.133   -1.743 0.603  C14 FND 4  
FND C15 C5  C 0 1 Y N N 2.722  10.045 -3.818 -0.347  -0.893 -0.387 C15 FND 5  
FND C16 C6  C 0 1 Y N N 1.432  10.352 -3.372 -1.598  -1.097 -0.926 C16 FND 6  
FND O1  O1  O 0 1 N N N 10.201 6.181  -2.129 6.986   1.969  -2.477 O1  FND 7  
FND C27 C7  C 0 1 N N N 9.191  6.836  -2.362 6.189   1.629  -1.624 C27 FND 8  
FND N1  N1  N 0 1 N N N 8.416  6.478  -3.377 5.336   0.667  -1.946 N1  FND 9  
FND C28 C8  C 0 1 N N N 8.642  5.238  -4.104 5.462   0.099  -3.291 C28 FND 10 
FND C19 C9  C 0 1 Y N N 7.328  7.223  -3.859 4.330   0.140  -1.136 C19 FND 11 
FND C18 C10 C 0 1 Y N N 7.131  7.252  -5.235 3.094   -0.175 -1.683 C18 FND 12 
FND N4  N2  N 0 1 Y N N 6.090  7.920  -5.747 2.162   -0.712 -0.908 N4  FND 13 
FND C26 C11 C 0 1 Y N N 8.934  8.035  -1.494 6.261   2.315  -0.330 C26 FND 14 
FND C25 C12 C 0 1 Y N N 10.053 8.665  -0.964 6.527   3.688  -0.285 C25 FND 15 
FND C24 C13 C 0 1 Y N N 9.919  9.781  -0.149 6.629   4.332  0.928  C24 FND 16 
FND C23 C14 C 0 1 Y N N 8.665  10.292 0.162  6.475   3.628  2.111  C23 FND 17 
FND C22 C15 C 0 1 Y N N 7.515  9.705  -0.339 6.199   2.275  2.084  C22 FND 18 
FND C21 C16 C 0 1 Y N N 7.591  8.567  -1.145 6.075   1.614  0.870  C21 FND 19 
FND N2  N3  N 0 1 N N N 6.399  8.022  -1.640 5.713   0.271  0.845  N2  FND 20 
FND C29 C17 C 0 1 N N S 5.233  7.724  -0.796 6.568   -0.743 1.467  C29 FND 21 
FND C20 C18 C 0 1 Y N N 6.324  7.925  -3.026 4.531   -0.093 0.225  C20 FND 22 
FND N3  N4  N 0 1 Y N N 5.316  8.580  -3.634 3.558   -0.653 0.936  N3  FND 23 
FND C17 C19 C 0 1 Y N N 5.183  8.558  -4.971 2.397   -0.953 0.372  C17 FND 24 
FND N5  N5  N 0 1 N N N 4.162  9.212  -5.580 1.402   -1.536 1.143  N5  FND 25 
FND C2  C20 C 0 1 N N N -3.423 10.051 -3.773 -4.163  0.033  -0.834 C2  FND 26 
FND C1  C21 C 0 1 N N N -4.323 8.887  -3.373 -5.283  0.615  0.034  C1  FND 27 
FND C3  C22 C 0 1 N N N -1.797 8.175  -3.503 -5.844  -1.503 -1.933 C3  FND 28 
FND C4  C23 C 0 1 N N N -2.643 7.490  -4.571 -6.946  -0.903 -1.053 C4  FND 29 
FND C   C24 C 0 1 N N N -4.125 7.657  -4.253 -6.604  0.554  -0.737 C   FND 30 
FND C31 C25 C 0 1 N N N 4.492  7.030  1.472  7.898   -1.057 -0.624 C31 FND 31 
FND C32 C26 C 0 1 N N N 5.695  7.219  0.566  7.012   -1.755 0.410  C32 FND 32 
FND O2  O2  O 0 1 N N N 1.927  8.772  -7.202 -0.183  -3.632 2.028  O2  FND 33 
FND C5  C27 C 0 1 N N N 0.836  8.272  -7.980 -1.041  -4.695 2.446  C5  FND 34 
FND C6  C28 C 0 1 N N N -1.049 10.497 -3.681 -3.734  -2.368 -1.044 C6  FND 35 
FND O3  O3  O 0 1 N N N -1.237 11.634 -3.296 -4.104  -3.493 -1.319 O3  FND 36 
FND N6  N6  N 0 1 N N N -2.036 9.607  -3.664 -4.550  -1.318 -1.263 N6  FND 37 
FND N7  N7  N 0 1 N N N -4.622 6.471  -3.537 -7.674  1.142  0.079  N7  FND 38 
FND C30 C29 C 0 1 N N N -4.396 5.249  -4.328 -8.976  1.022  -0.593 C30 FND 39 
FND C33 C30 C 0 1 N N N -4.908 4.028  -3.567 -10.072 1.573  0.322  C33 FND 40 
FND N8  N8  N 0 1 N N N -6.340 4.179  -3.250 -9.778  2.976  0.645  N8  FND 41 
FND C35 C31 C 0 1 N N N -6.571 5.418  -2.494 -8.476  3.096  1.317  C35 FND 42 
FND C36 C32 C 0 1 N N N -6.066 6.619  -3.289 -7.380  2.545  0.403  C36 FND 43 
FND C37 C33 C 0 1 N N N -6.780 3.044  -2.425 -10.848 3.563  1.461  C37 FND 44 
FND C7  C34 C 0 1 N N N 4.371  6.629  -1.411 5.786   -1.464 2.567  C7  FND 45 
FND H1  H1  H 0 1 N N N -0.387 9.478  -6.105 -2.520  -3.826 0.877  H1  FND 46 
FND H2  H2  H 0 1 N N N 3.569  10.233 -3.174 0.264   -0.074 -0.737 H2  FND 47 
FND H3  H3  H 0 1 N N N 1.295  10.759 -2.381 -1.967  -0.438 -1.698 H3  FND 48 
FND H4  H4  H 0 1 N N N 9.506  4.711  -3.672 6.278   0.593  -3.819 H4  FND 49 
FND H5  H5  H 0 1 N N N 7.749  4.601  -4.028 5.670   -0.968 -3.217 H5  FND 50 
FND H6  H6  H 0 1 N N N 8.842  5.464  -5.162 4.531   0.251  -3.838 H6  FND 51 
FND H7  H7  H 0 1 N N N 7.817  6.736  -5.890 2.894   0.015  -2.727 H7  FND 52 
FND H8  H8  H 0 1 N N N 11.038 8.283  -1.188 6.652   4.243  -1.203 H8  FND 53 
FND H9  H9  H 0 1 N N N 10.802 10.259 0.249  6.832   5.392  0.958  H9  FND 54 
FND H10 H10 H 0 1 N N N 8.586  11.158 0.803  6.570   4.139  3.058  H10 FND 55 
FND H11 H11 H 0 1 N N N 6.551  10.131 -0.104 6.080   1.730  3.009  H11 FND 56 
FND H12 H12 H 0 1 N N N 4.625  8.631  -0.660 7.445   -0.262 1.901  H12 FND 57 
FND H13 H13 H 0 1 N N N 4.338  9.521  -6.515 1.589   -1.799 2.058  H13 FND 58 
FND H14 H14 H 0 1 N N N -3.596 10.905 -3.101 -4.013  0.665  -1.710 H14 FND 59 
FND H15 H15 H 0 1 N N N -3.639 10.351 -4.809 -3.241  -0.018 -0.255 H15 FND 60 
FND H16 H16 H 0 1 N N N -5.371 9.210  -3.452 -5.371  0.035  0.952  H16 FND 61 
FND H17 H17 H 0 1 N N N -4.101 8.613  -2.331 -5.052  1.651  0.279  H17 FND 62 
FND H18 H18 H 0 1 N N N -2.106 7.845  -2.500 -6.032  -2.567 -2.079 H18 FND 63 
FND H19 H19 H 0 1 N N N -0.732 7.945  -3.653 -5.833  -0.998 -2.899 H19 FND 64 
FND H20 H20 H 0 1 N N N -2.396 6.419  -4.599 -7.898  -0.947 -1.582 H20 FND 65 
FND H21 H21 H 0 1 N N N -2.428 7.942  -5.551 -7.018  -1.470 -0.125 H21 FND 66 
FND H22 H22 H 0 1 N N N -4.684 7.790  -5.191 -6.508  1.115  -1.668 H22 FND 67 
FND H23 H23 H 0 1 N N N 4.826  6.666  2.455  8.775   -0.641 -0.129 H23 FND 68 
FND H24 H24 H 0 1 N N N 3.971  7.991  1.595  8.214   -1.778 -1.378 H24 FND 69 
FND H25 H25 H 0 1 N N N 3.806  6.296  1.023  7.336   -0.255 -1.102 H25 FND 70 
FND H26 H26 H 0 1 N N N 6.216  6.258  0.443  7.574   -2.557 0.888  H26 FND 71 
FND H27 H27 H 0 1 N N N 6.381  7.953  1.015  6.135   -2.171 -0.086 H27 FND 72 
FND H28 H28 H 0 1 N N N 1.212  7.907  -8.947 -1.968  -4.279 2.842  H28 FND 73 
FND H29 H29 H 0 1 N N N 0.349  7.446  -7.441 -1.266  -5.337 1.595  H29 FND 74 
FND H30 H30 H 0 1 N N N 0.107  9.078  -8.150 -0.545  -5.279 3.221  H30 FND 75 
FND H32 H32 H 0 1 N N N -3.319 5.133  -4.519 -8.959  1.590  -1.523 H32 FND 76 
FND H33 H33 H 0 1 N N N -4.931 5.331  -5.286 -9.177  -0.027 -0.811 H33 FND 77 
FND H34 H34 H 0 1 N N N -4.767 3.130  -4.187 -11.035 1.511  -0.186 H34 FND 78 
FND H35 H35 H 0 1 N N N -4.340 3.920  -2.631 -10.107 0.987  1.240  H35 FND 79 
FND H37 H37 H 0 1 N N N -6.034 5.365  -1.535 -8.275  4.145  1.535  H37 FND 80 
FND H38 H38 H 0 1 N N N -7.649 5.534  -2.305 -8.494  2.528  2.247  H38 FND 81 
FND H39 H39 H 0 1 N N N -6.247 7.540  -2.716 -6.418  2.607  0.910  H39 FND 82 
FND H40 H40 H 0 1 N N N -6.599 6.674  -4.249 -7.345  3.131  -0.516 H40 FND 83 
FND H41 H41 H 0 1 N N N -7.848 3.155  -2.188 -10.945 3.003  2.391  H41 FND 84 
FND H42 H42 H 0 1 N N N -6.623 2.106  -2.978 -10.605 4.602  1.686  H42 FND 85 
FND H43 H43 H 0 1 N N N -6.198 3.021  -1.492 -11.789 3.522  0.912  H43 FND 86 
FND H44 H44 H 0 1 N N N 3.509  6.430  -0.757 4.909   -1.945 2.134  H44 FND 87 
FND H45 H45 H 0 1 N N N 4.014  6.955  -2.399 6.423   -2.218 3.030  H45 FND 88 
FND H46 H46 H 0 1 N N N 4.967  5.711  -1.521 5.470   -0.743 3.321  H46 FND 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FND C5  O2  SING N N 1  
FND O2  C13 SING N N 2  
FND C13 C12 DOUB Y N 3  
FND C13 C14 SING Y N 4  
FND N4  C18 DOUB Y N 5  
FND N4  C17 SING Y N 6  
FND N5  C14 SING N N 7  
FND N5  C17 SING N N 8  
FND C12 C11 SING Y N 9  
FND C18 C19 SING Y N 10 
FND C14 C15 DOUB Y N 11 
FND C17 N3  DOUB Y N 12 
FND C4  C   SING N N 13 
FND C4  C3  SING N N 14 
FND C30 C33 SING N N 15 
FND C30 N7  SING N N 16 
FND C   N7  SING N N 17 
FND C   C1  SING N N 18 
FND C11 C6  SING N N 19 
FND C11 C16 DOUB Y N 20 
FND C28 N1  SING N N 21 
FND C19 N1  SING N N 22 
FND C19 C20 DOUB Y N 23 
FND C15 C16 SING Y N 24 
FND C2  N6  SING N N 25 
FND C2  C1  SING N N 26 
FND C6  N6  SING N N 27 
FND C6  O3  DOUB N N 28 
FND N6  C3  SING N N 29 
FND N3  C20 SING Y N 30 
FND C33 N8  SING N N 31 
FND N7  C36 SING N N 32 
FND N1  C27 SING N N 33 
FND C36 C35 SING N N 34 
FND N8  C35 SING N N 35 
FND N8  C37 SING N N 36 
FND C20 N2  SING N N 37 
FND C27 O1  DOUB N N 38 
FND C27 C26 SING N N 39 
FND N2  C21 SING N N 40 
FND N2  C29 SING N N 41 
FND C26 C21 DOUB Y N 42 
FND C26 C25 SING Y N 43 
FND C7  C29 SING N N 44 
FND C21 C22 SING Y N 45 
FND C25 C24 DOUB Y N 46 
FND C29 C32 SING N N 47 
FND C22 C23 DOUB Y N 48 
FND C24 C23 SING Y N 49 
FND C32 C31 SING N N 50 
FND C12 H1  SING N N 51 
FND C15 H2  SING N N 52 
FND C16 H3  SING N N 53 
FND C28 H4  SING N N 54 
FND C28 H5  SING N N 55 
FND C28 H6  SING N N 56 
FND C18 H7  SING N N 57 
FND C25 H8  SING N N 58 
FND C24 H9  SING N N 59 
FND C23 H10 SING N N 60 
FND C22 H11 SING N N 61 
FND C29 H12 SING N N 62 
FND N5  H13 SING N N 63 
FND C2  H14 SING N N 64 
FND C2  H15 SING N N 65 
FND C1  H16 SING N N 66 
FND C1  H17 SING N N 67 
FND C3  H18 SING N N 68 
FND C3  H19 SING N N 69 
FND C4  H20 SING N N 70 
FND C4  H21 SING N N 71 
FND C   H22 SING N N 72 
FND C31 H23 SING N N 73 
FND C31 H24 SING N N 74 
FND C31 H25 SING N N 75 
FND C32 H26 SING N N 76 
FND C32 H27 SING N N 77 
FND C5  H28 SING N N 78 
FND C5  H29 SING N N 79 
FND C5  H30 SING N N 80 
FND C30 H32 SING N N 81 
FND C30 H33 SING N N 82 
FND C33 H34 SING N N 83 
FND C33 H35 SING N N 84 
FND C35 H37 SING N N 85 
FND C35 H38 SING N N 86 
FND C36 H39 SING N N 87 
FND C36 H40 SING N N 88 
FND C37 H41 SING N N 89 
FND C37 H42 SING N N 90 
FND C37 H43 SING N N 91 
FND C7  H44 SING N N 92 
FND C7  H45 SING N N 93 
FND C7  H46 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FND SMILES           ACDLabs              12.01 "c3(C(N1CCC(CC1)N2CCN(CC2)C)=O)ccc(c(c3)OC)Nc6ncc5N(C(=O)c4c(cccc4)N(C(CC)C)c5n6)C" 
FND InChI            InChI                1.03  
"InChI=1S/C34H44N8O3/c1-6-23(2)42-28-10-8-7-9-26(28)33(44)39(4)29-22-35-34(37-31(29)42)36-27-12-11-24(21-30(27)45-5)32(43)41-15-13-25(14-16-41)40-19-17-38(3)18-20-40/h7-12,21-23,25H,6,13-20H2,1-5H3,(H,35,36,37)/t23-/m0/s1" 
FND InChIKey         InChI                1.03  ACWOMSOYIIVIRV-QHCPKHFHSA-N 
FND SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)N1c2ccccc2C(=O)N(C)c3cnc(Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(C)CC6)nc13" 
FND SMILES           CACTVS               3.385 "CC[CH](C)N1c2ccccc2C(=O)N(C)c3cnc(Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(C)CC6)nc13" 
FND SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@H](C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(CC6)C)C" 
FND SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(CC6)C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FND "SYSTEMATIC NAME" ACDLabs              12.01 "11-[(2S)-butan-2-yl]-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
FND "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "11-[(2~{S})-butan-2-yl]-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FND "Create component" 2018-04-10 RCSB 
FND "Initial release"  2018-08-29 RCSB 
# 
