data_FKD
# 
_chem_comp.id                                    FKD 
_chem_comp.name                                  "3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid" 
_chem_comp.type                                  "L-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C9 H15 F O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulosonic acid; 3-deoxy-3-fluoro-D-erythro-L-manno-non-2-ulosonic acid;
3-deoxy-3-fluoro-D-erythro-manno-non-2-ulosonic acid
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-09-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        286.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FKD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2AGS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 FKD "3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulosonic acid" PDB ? 
2 FKD "3-deoxy-3-fluoro-D-erythro-L-manno-non-2-ulosonic acid"       PDB ? 
3 FKD "3-deoxy-3-fluoro-D-erythro-manno-non-2-ulosonic acid"         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FKD O2   O2   O 0 1 N Y N N N N 26.875 -2.795 6.698  1.336  0.928  1.823  O2   FKD 1  
FKD C1   C1   C 0 1 N N N N N N 27.155 -3.979 8.840  1.819  2.197  -0.153 C1   FKD 2  
FKD F1   F1   F 0 1 N N N N N N 25.349 -2.337 10.045 2.440  -0.248 -1.437 F1   FKD 3  
FKD C2   C2   C 0 1 N N R N N N 26.245 -3.168 7.930  1.375  0.865  0.396  C2   FKD 4  
FKD C3   C3   C 0 1 N N R N N N 25.676 -2.023 8.769  2.362  -0.221 -0.040 C3   FKD 5  
FKD C4   C4   C 0 1 N N R N N N 24.434 -1.461 8.094  1.872  -1.579 0.471  C4   FKD 6  
FKD O4   O4   O 0 1 N N N N N N 23.972 -0.321 8.796  2.748  -2.609 0.006  O4   FKD 7  
FKD C5   C5   C 0 1 N N R N N N 23.376 -2.539 7.941  0.458  -1.832 -0.059 C5   FKD 8  
FKD O5   O5   O 0 1 N N N N N N 22.223 -2.021 7.294  -0.037 -3.065 0.469  O5   FKD 9  
FKD C6   C6   C 0 1 N N S N N N 24.007 -3.685 7.130  -0.455 -0.684 0.378  C6   FKD 10 
FKD O6   O6   O 0 1 N N N N N N 25.211 -4.149 7.727  0.073  0.553  -0.104 O6   FKD 11 
FKD C7   C7   C 0 1 N N R N N N 23.060 -4.898 7.134  -1.857 -0.898 -0.197 C7   FKD 12 
FKD O7   O7   O 0 1 N N N N N N 22.840 -5.366 8.475  -1.771 -1.050 -1.616 O7   FKD 13 
FKD C8   C8   C 0 1 N N R N N N 23.663 -6.035 6.325  -2.735 0.310  0.135  C8   FKD 14 
FKD O8   O8   O 0 1 N N N N N N 23.814 -5.591 4.987  -2.820 0.461  1.553  O8   FKD 15 
FKD C9   C9   C 0 1 N N N N N N 22.724 -7.260 6.351  -4.136 0.095  -0.441 C9   FKD 16 
FKD O9   O9   O 0 1 N N N N N N 21.473 -6.892 5.807  -4.922 1.271  -0.233 O9   FKD 17 
FKD O1A  O1A  O 0 1 N N N N N N 27.292 -5.180 8.505  1.060  2.857  -0.822 O1A  FKD 18 
FKD O1B  O1B  O 0 1 N N N N N N 27.800 -3.454 9.800  3.057  2.649  0.101  O1B  FKD 19 
FKD HO2  HO2  H 0 1 N Y N N N N 26.266 -2.293 6.170  0.730  1.596  2.171  HO2  FKD 20 
FKD H31  H3   H 0 1 N N N N N N 26.431 -1.223 8.774  3.347  -0.007 0.376  H31  FKD 21 
FKD H4   H4   H 0 1 N N N N N N 24.729 -1.150 7.081  1.860  -1.576 1.561  H4   FKD 22 
FKD HO4  HO4  H 0 1 N Y N N N N 23.197 0.023  8.368  3.664  -2.508 0.298  HO4  FKD 23 
FKD H5   H5   H 0 1 N N N N N N 23.112 -2.921 8.938  0.480  -1.885 -1.147 H5   FKD 24 
FKD HO5  HO5  H 0 1 N Y N N N N 21.573 -2.708 7.207  0.497  -3.836 0.234  HO5  FKD 25 
FKD H6   H6   H 0 1 N N N N N N 24.177 -3.354 6.095  -0.510 -0.657 1.467  H6   FKD 26 
FKD H7   H7   H 0 1 N N N N N N 22.105 -4.601 6.676  -2.295 -1.796 0.238  H7   FKD 27 
FKD HO7  HO7  H 0 1 N Y N N N N 22.254 -6.114 8.458  -1.390 -0.286 -2.070 HO7  FKD 28 
FKD H8   H8   H 0 1 N N N N N N 24.635 -6.316 6.757  -2.297 1.208  -0.301 H8   FKD 29 
FKD HO8  HO8  H 0 1 N Y N N N N 24.190 -6.288 4.462  -3.202 -0.302 2.008  HO8  FKD 30 
FKD H91  H9   H 0 1 N N N N N N 23.162 -8.073 5.753  -4.063 -0.108 -1.509 H91  FKD 31 
FKD H92  H9A  H 0 1 N N N N N N 22.589 -7.600 7.389  -4.608 -0.751 0.059  H92  FKD 32 
FKD HO9  HO9  H 0 1 N Y N N N N 20.889 -7.641 5.820  -5.824 1.206  -0.573 HO9  FKD 33 
FKD HO1B HO1B H 0 0 N N N N N N 28.371 -4.104 10.192 3.296  3.508  -0.272 HO1B FKD 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FKD O2  C2   SING N N 1  
FKD O2  HO2  SING N N 2  
FKD C2  C1   SING N N 3  
FKD O1A C1   DOUB N N 4  
FKD C1  O1B  SING N N 5  
FKD C3  F1   SING N N 6  
FKD O6  C2   SING N N 7  
FKD C2  C3   SING N N 8  
FKD C4  C3   SING N N 9  
FKD C3  H31  SING N N 10 
FKD C5  C4   SING N N 11 
FKD C4  O4   SING N N 12 
FKD C4  H4   SING N N 13 
FKD O4  HO4  SING N N 14 
FKD C6  C5   SING N N 15 
FKD O5  C5   SING N N 16 
FKD C5  H5   SING N N 17 
FKD O5  HO5  SING N N 18 
FKD C6  C7   SING N N 19 
FKD C6  O6   SING N N 20 
FKD C6  H6   SING N N 21 
FKD C8  C7   SING N N 22 
FKD C7  O7   SING N N 23 
FKD C7  H7   SING N N 24 
FKD O7  HO7  SING N N 25 
FKD O8  C8   SING N N 26 
FKD C8  C9   SING N N 27 
FKD C8  H8   SING N N 28 
FKD O8  HO8  SING N N 29 
FKD O9  C9   SING N N 30 
FKD C9  H91  SING N N 31 
FKD C9  H92  SING N N 32 
FKD O9  HO9  SING N N 33 
FKD O1B HO1B SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FKD SMILES           ACDLabs              12.01 "O=C(O)C1(O)OC(C(O)C(O)C1F)C(O)C(O)CO"                                                                                          
FKD InChI            InChI                1.03  "InChI=1S/C9H15FO9/c10-7-5(15)4(14)6(3(13)2(12)1-11)19-9(7,18)8(16)17/h2-7,11-15,18H,1H2,(H,16,17)/t2-,3-,4-,5-,6+,7-,9+/m1/s1" 
FKD InChIKey         InChI                1.03  KOWJBKIDVGQXJZ-QMFVTVPYSA-N                                                                                                     
FKD SMILES_CANONICAL CACTVS               3.370 "OC[C@@H](O)[C@@H](O)[C@@H]1O[C@@](O)([C@H](F)[C@H](O)[C@H]1O)C(O)=O"                                                           
FKD SMILES           CACTVS               3.370 "OC[CH](O)[CH](O)[CH]1O[C](O)([CH](F)[CH](O)[CH]1O)C(O)=O"                                                                      
FKD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H]([C@H]([C@H]1[C@@H]([C@H]([C@H]([C@](O1)(C(=O)O)O)F)O)O)O)O)O"                                                          
FKD SMILES           "OpenEye OEToolkits" 1.7.6 "C(C(C(C1C(C(C(C(O1)(C(=O)O)O)F)O)O)O)O)O"                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FKD "SYSTEMATIC NAME" ACDLabs              12.01 "3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid"                                              
FKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4R,5R,6S)-3-fluoranyl-2,4,5-tris(oxidanyl)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
FKD "CARBOHYDRATE ISOMER"                 L        PDB ? 
FKD "CARBOHYDRATE RING"                   pyranose PDB ? 
FKD "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
FKD "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FKD "Create component"         2005-09-13 RCSB 
FKD "Modify descriptor"        2011-06-04 RCSB 
FKD "Other modification"       2012-12-22 RCSB 
FKD "Other modification"       2020-07-03 RCSB 
FKD "Modify synonyms"          2020-07-17 RCSB 
FKD "Modify internal type"     2020-07-17 RCSB 
FKD "Modify linking type"      2020-07-17 RCSB 
FKD "Modify atom id"           2020-07-17 RCSB 
FKD "Modify component atom id" 2020-07-17 RCSB 
FKD "Modify leaving atom flag" 2020-07-17 RCSB 
FKD "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            FKD 
_pdbx_chem_comp_pcm.modified_residue_id                TYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OH 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
