data_C8D
# 
_chem_comp.id                                    C8D 
_chem_comp.name                                  "N-[(CYCLOPENTYLOXY)CARBONYL]-3-METHYL-L-VALYL-(4R)-N-{(1R)-3-HYDROXY-1-[HYDROXY(OXIDO)BORANYL]PROPYL}-4-(ISOQUINOLIN-1-YLOXY)-L-PROLINAMIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H40 B N4 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2010-04-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        583.461 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2XCN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8D O1   O1   O 0  1 N N N N N N 59.446 24.222 8.569  4.604  -0.462 0.488  O1   C8D 1  
C8D C6   C6   C 0  1 N N N N N N 58.875 24.277 9.620  4.585  0.680  0.073  C6   C8D 2  
C8D O2   O2   O 0  1 N N N N N N 58.371 25.429 10.061 5.734  1.287  -0.279 O2   C8D 3  
C8D C7   C7   C 0  1 N N N N N N 58.221 26.562 9.178  6.957  0.518  -0.137 C7   C8D 4  
C8D C8   C8   C 0  1 N N N N N N 57.498 27.707 9.889  8.150  1.450  0.162  C8   C8D 5  
C8D C9   C9   C 0  1 N N N N N N 56.643 28.421 8.830  9.357  0.876  -0.600 C9   C8D 6  
C8D C10  C10  C 0  1 N N N N N N 56.677 27.574 7.551  8.857  -0.385 -1.334 C10  C8D 7  
C8D C11  C11  C 0  1 N N N N N N 57.383 26.261 7.922  7.331  -0.160 -1.478 C11  C8D 8  
C8D N1   N1   N 0  1 N N N N N N 58.671 23.213 10.446 3.414  1.336  -0.041 N1   C8D 9  
C8D C5   C5   C 0  1 N N S N N N 59.146 21.872 10.062 2.163  0.673  0.336  C5   C8D 10 
C8D C2   C2   C 0  1 N N N N N N 59.850 21.041 11.203 1.937  0.829  1.842  C2   C8D 11 
C8D C1   C1   C 0  1 N N N N N N 60.201 19.600 10.772 1.961  2.313  2.210  C1   C8D 12 
C8D C3   C3   C 0  1 N N N N N N 61.150 21.732 11.668 0.579  0.232  2.218  C3   C8D 13 
C8D C4   C4   C 0  1 N N N N N N 58.996 20.898 12.469 3.044  0.096  2.602  C4   C8D 14 
C8D C12  C12  C 0  1 N N N N N N 57.855 21.132 9.582  1.016  1.301  -0.412 C12  C8D 15 
C8D O3   O3   O 0  1 N N N N N N 56.873 21.120 10.325 1.041  2.484  -0.679 O3   C8D 16 
C8D N2   N2   N 0  1 N N N N N N 57.849 20.505 8.358  -0.038 0.549  -0.784 N2   C8D 17 
C8D C16  C16  C 0  1 N N S N N N 56.669 19.793 7.826  -1.258 1.046  -1.437 C16  C8D 18 
C8D C17  C17  C 0  1 N N N N N N 56.384 18.472 8.566  -1.933 2.064  -0.554 C17  C8D 19 
C8D N3   N3   N 0  1 N N N N N N 55.061 18.119 8.610  -3.076 2.654  -0.957 N3   C8D 20 
C8D C18  C18  C 0  1 N N R N N N 54.636 16.884 9.294  -3.732 3.644  -0.099 C18  C8D 21 
C8D C19  C19  C 0  1 N N N N N N 53.916 17.195 10.643 -4.155 4.849  -0.941 C19  C8D 22 
C8D C20  C20  C 0  1 N N N N N N 54.707 18.234 11.470 -4.840 5.883  -0.044 C20  C8D 23 
C8D O5   O5   O 0  1 N N N N N N 55.350 17.486 12.476 -5.235 7.008  -0.831 O5   C8D 24 
C8D B    B    B 0  1 N N N N N N 53.618 15.968 8.486  -4.999 3.000  0.568  B    C8D 25 
C8D O6   O6   O 0  1 N N N N N N 53.881 15.411 7.309  -6.051 2.499  -0.244 O6   C8D 26 
C8D O8   O8   O -1 1 N N N N N N 53.358 14.735 9.356  -5.084 2.928  1.833  O8   C8D 27 
C8D O4   O4   O 0  1 N N N N N N 57.328 17.837 9.050  -1.448 2.352  0.520  O4   C8D 28 
C8D C13  C13  C 0  1 N N N N N N 58.952 20.472 7.401  -0.157 -0.911 -0.611 C13  C8D 29 
C8D C14  C14  C 0  1 N N R N N N 58.193 20.409 6.055  -1.681 -1.186 -0.596 C14  C8D 30 
C8D C15  C15  C 0  1 N N N N N N 57.090 19.391 6.414  -2.191 -0.165 -1.649 C15  C8D 31 
C8D O7   O7   O 0  1 N N N N N N 57.663 21.698 5.706  -1.964 -2.526 -1.005 O7   C8D 32 
C8D C21  C21  C 0  1 Y N N N N N 57.158 21.887 4.408  -2.037 -3.464 -0.030 C21  C8D 33 
C8D N4   N4   N 0  1 Y N N N N N 57.301 20.936 3.440  -1.852 -3.125 1.230  N4   C8D 34 
C8D C22  C22  C 0  1 Y N N N N N 56.852 21.114 2.166  -1.914 -4.001 2.224  C22  C8D 35 
C8D C23  C23  C 0  1 Y N N N N N 56.208 22.286 1.749  -2.174 -5.319 2.007  C23  C8D 36 
C8D C24  C24  C 0  1 Y N N N N N 56.028 23.295 2.713  -2.383 -5.761 0.687  C24  C8D 37 
C8D C29  C29  C 0  1 Y N N N N N 56.503 23.099 4.052  -2.319 -4.806 -0.359 C29  C8D 38 
C8D C25  C25  C 0  1 Y N N N N N 55.376 24.496 2.326  -2.656 -7.103 0.384  C25  C8D 39 
C8D C26  C26  C 0  1 Y N N N N N 55.195 25.520 3.281  -2.850 -7.470 -0.914 C26  C8D 40 
C8D C27  C27  C 0  1 Y N N N N N 55.663 25.337 4.613  -2.781 -6.533 -1.943 C27  C8D 41 
C8D C28  C28  C 0  1 Y N N N N N 56.311 24.137 5.003  -2.529 -5.220 -1.682 C28  C8D 42 
C8D H1   H1   H 0  1 N N N N N N 58.197 23.343 11.317 3.398  2.247  -0.372 H1   C8D 43 
C8D H7   H7   H 0  1 N N N N N N 59.249 26.822 8.885  6.849  -0.227 0.652  H7   C8D 44 
C8D H81C H81C H 0  0 N N N N N N 56.860 27.315 10.695 7.932  2.459  -0.189 H81C C8D 45 
C8D H82C H82C H 0  0 N N N N N N 58.218 28.402 10.346 8.355  1.463  1.232  H82C C8D 46 
C8D H111 H111 H 0  0 N N N N N N 58.029 25.924 7.098  6.809  -1.110 -1.589 H111 C8D 47 
C8D H112 H112 H 0  0 N N N N N N 56.656 25.457 8.111  7.116  0.501  -2.318 H112 C8D 48 
C8D H91C H91C H 0  0 N N N N N N 55.608 28.522 9.187  9.726  1.607  -1.320 H91C C8D 49 
C8D H92C H92C H 0  0 N N N N N N 57.038 29.428 8.633  10.149 0.611  0.101  H92C C8D 50 
C8D H101 H101 H 0  0 N N N N N N 55.656 27.375 7.192  9.325  -0.466 -2.315 H101 C8D 51 
C8D H102 H102 H 0  0 N N N N N N 57.207 28.096 6.741  9.057  -1.276 -0.740 H102 C8D 52 
C8D H5   H5   H 0  1 N N N N N N 59.934 21.973 9.302  2.224  -0.387 0.086  H5   C8D 53 
C8D H11C H11C H 0  0 N N N N N N 60.284 19.555 9.676  1.173  2.835  1.668  H11C C8D 54 
C8D H12C H12C H 0  0 N N N N N N 61.159 19.305 11.225 1.800  2.425  3.282  H12C C8D 55 
C8D H13C H13C H 0  0 N N N N N N 59.409 18.914 11.108 2.929  2.738  1.942  H13C C8D 56 
C8D H31C H31C H 0  0 N N N N N N 61.808 21.896 10.802 0.590  -0.842 2.034  H31C C8D 57 
C8D H32C H32C H 0  0 N N N N N N 60.905 22.699 12.131 0.380  0.419  3.273  H32C C8D 58 
C8D H33C H33C H 0  0 N N N N N N 61.662 21.093 12.402 -0.201 0.696  1.614  H33C C8D 59 
C8D H41C H41C H 0  0 N N N N N N 59.651 20.864 13.352 4.011  0.521  2.335  H41C C8D 60 
C8D H42C H42C H 0  0 N N N N N N 58.315 21.758 12.551 2.883  0.207  3.675  H42C C8D 61 
C8D H43C H43C H 0  0 N N N N N N 58.409 19.969 12.412 3.026  -0.962 2.340  H43C C8D 62 
C8D H16  H16  H 0  1 N N N N N N 55.778 20.433 7.910  -1.008 1.497  -2.397 H16  C8D 63 
C8D H131 H131 H 0  0 N N N N N N 59.593 21.363 7.475  0.315  -1.431 -1.445 H131 C8D 64 
C8D H132 H132 H 0  0 N N N N N N 59.651 19.637 7.557  0.294  -1.218 0.333  H132 C8D 65 
C8D H151 H151 H 0  0 N N N N N N 57.471 18.360 6.387  -3.228 0.108  -1.454 H151 C8D 66 
C8D H152 H152 H 0  0 N N N N N N 56.252 19.407 5.702  -2.080 -0.566 -2.656 H152 C8D 67 
C8D H3   H3   H 0  1 N N N N N N 54.377 18.704 8.174  -3.464 2.424  -1.816 H3   C8D 68 
C8D H18  H18  H 0  1 N N N N N N 55.587 16.345 9.420  -3.038 3.968  0.677  H18  C8D 69 
C8D H191 H191 H 0  0 N N N N N N 52.915 17.597 10.429 -3.275 5.296  -1.404 H191 C8D 70 
C8D H192 H192 H 0  0 N N N N N N 53.846 16.264 11.225 -4.848 4.525  -1.717 H192 C8D 71 
C8D H201 H201 H 0  0 N N N N N N 55.440 18.762 10.842 -5.720 5.436  0.418  H201 C8D 72 
C8D H202 H202 H 0  0 N N N N N N 54.051 19.010 11.891 -4.146 6.207  0.732  H202 C8D 73 
C8D HA   HA   H 0  1 N N N N N N 55.495 16.599 12.168 -5.677 7.705  -0.327 HA   C8D 74 
C8D H6   H6   H 0  1 N N N N N N 53.944 16.087 6.645  -6.811 2.112  0.212  H6   C8D 75 
C8D H14  H14  H 0  1 N N N N N N 58.796 20.126 5.180  -2.105 -0.982 0.387  H14  C8D 76 
C8D H22  H22  H 0  1 N N N N N N 56.998 20.320 1.449  -1.752 -3.658 3.235  H22  C8D 77 
C8D H23  H23  H 0  1 N N N N N N 55.865 22.410 0.732  -2.218 -6.013 2.833  H23  C8D 78 
C8D H25  H25  H 0  1 N N N N N N 55.023 24.624 1.313  -2.711 -7.839 1.172  H25  C8D 79 
C8D H28  H28  H 0  1 N N N N N N 56.657 24.013 6.019  -2.479 -4.505 -2.490 H28  C8D 80 
C8D H26  H26  H 0  1 N N N N N N 54.703 26.440 3.002  -3.060 -8.503 -1.149 H26  C8D 81 
C8D H27  H27  H 0  1 N N N N N N 55.522 26.125 5.338  -2.938 -6.852 -2.963 H27  C8D 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8D O1  C6   DOUB N N 1  
C8D C6  O2   SING N N 2  
C8D C6  N1   SING N N 3  
C8D O2  C7   SING N N 4  
C8D C7  C8   SING N N 5  
C8D C7  C11  SING N N 6  
C8D C8  C9   SING N N 7  
C8D C9  C10  SING N N 8  
C8D C10 C11  SING N N 9  
C8D N1  C5   SING N N 10 
C8D C5  C2   SING N N 11 
C8D C5  C12  SING N N 12 
C8D C2  C1   SING N N 13 
C8D C2  C3   SING N N 14 
C8D C2  C4   SING N N 15 
C8D C12 O3   DOUB N N 16 
C8D C12 N2   SING N N 17 
C8D N2  C16  SING N N 18 
C8D N2  C13  SING N N 19 
C8D C16 C17  SING N N 20 
C8D C16 C15  SING N N 21 
C8D C17 N3   SING N N 22 
C8D C17 O4   DOUB N N 23 
C8D N3  C18  SING N N 24 
C8D C18 C19  SING N N 25 
C8D C18 B    SING N N 26 
C8D C19 C20  SING N N 27 
C8D C20 O5   SING N N 28 
C8D B   O6   SING N N 29 
C8D B   O8   SING N N 30 
C8D C13 C14  SING N N 31 
C8D C14 C15  SING N N 32 
C8D C14 O7   SING N N 33 
C8D O7  C21  SING N N 34 
C8D C21 N4   SING Y N 35 
C8D C21 C29  DOUB Y N 36 
C8D N4  C22  DOUB Y N 37 
C8D C22 C23  SING Y N 38 
C8D C23 C24  DOUB Y N 39 
C8D C24 C29  SING Y N 40 
C8D C24 C25  SING Y N 41 
C8D C29 C28  SING Y N 42 
C8D C25 C26  DOUB Y N 43 
C8D C26 C27  SING Y N 44 
C8D C27 C28  DOUB Y N 45 
C8D N1  H1   SING N N 46 
C8D C7  H7   SING N N 47 
C8D C8  H81C SING N N 48 
C8D C8  H82C SING N N 49 
C8D C11 H111 SING N N 50 
C8D C11 H112 SING N N 51 
C8D C9  H91C SING N N 52 
C8D C9  H92C SING N N 53 
C8D C10 H101 SING N N 54 
C8D C10 H102 SING N N 55 
C8D C5  H5   SING N N 56 
C8D C1  H11C SING N N 57 
C8D C1  H12C SING N N 58 
C8D C1  H13C SING N N 59 
C8D C3  H31C SING N N 60 
C8D C3  H32C SING N N 61 
C8D C3  H33C SING N N 62 
C8D C4  H41C SING N N 63 
C8D C4  H42C SING N N 64 
C8D C4  H43C SING N N 65 
C8D C16 H16  SING N N 66 
C8D C13 H131 SING N N 67 
C8D C13 H132 SING N N 68 
C8D C15 H151 SING N N 69 
C8D C15 H152 SING N N 70 
C8D N3  H3   SING N N 71 
C8D C18 H18  SING N N 72 
C8D C19 H191 SING N N 73 
C8D C19 H192 SING N N 74 
C8D C20 H201 SING N N 75 
C8D C20 H202 SING N N 76 
C8D O5  HA   SING N N 77 
C8D O6  H6   SING N N 78 
C8D C14 H14  SING N N 79 
C8D C22 H22  SING N N 80 
C8D C23 H23  SING N N 81 
C8D C25 H25  SING N N 82 
C8D C28 H28  SING N N 83 
C8D C26 H26  SING N N 84 
C8D C27 H27  SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8D SMILES           ACDLabs              10.04 "O=C(N3C(C(=O)NC(B([O-])O)CCO)CC(Oc1nccc2c1cccc2)C3)C(NC(=O)OC4CCCC4)C(C)(C)C"                                                                                                                                                                                      
C8D SMILES_CANONICAL CACTVS               3.352 "CC(C)(C)[C@H](NC(=O)OC1CCCC1)C(=O)N2C[C@@H](C[C@H]2C(=O)N[C@@H](CCO)B(O)[O-])Oc3nccc4ccccc34"                                                                                                                                                                      
C8D SMILES           CACTVS               3.352 "CC(C)(C)[CH](NC(=O)OC1CCCC1)C(=O)N2C[CH](C[CH]2C(=O)N[CH](CCO)B(O)[O-])Oc3nccc4ccccc34"                                                                                                                                                                            
C8D SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "B([C@H](CCO)NC(=O)[C@@H]1C[C@H](CN1C(=O)[C@H](C(C)(C)C)NC(=O)OC2CCCC2)Oc3c4ccccc4ccn3)(O)[O-]"                                                                                                                                                                     
C8D SMILES           "OpenEye OEToolkits" 1.6.1 "B(C(CCO)NC(=O)C1CC(CN1C(=O)C(C(C)(C)C)NC(=O)OC2CCCC2)Oc3c4ccccc4ccn3)(O)[O-]"                                                                                                                                                                                      
C8D InChI            InChI                1.03  "InChI=1S/C29H40BN4O8/c1-29(2,3)24(33-28(38)42-19-9-5-6-10-19)27(37)34-17-20(16-22(34)25(36)32-23(13-15-35)30(39)40)41-26-21-11-7-4-8-18(21)12-14-31-26/h4,7-8,11-12,14,19-20,22-24,35,39H,5-6,9-10,13,15-17H2,1-3H3,(H,32,36)(H,33,38)/q-1/t20-,22+,23+,24-/m1/s1" 
C8D InChIKey         InChI                1.03  COHYIEQRPXQCHT-AYVPJYCDSA-N                                                                                                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8D "SYSTEMATIC NAME" ACDLabs              10.04 "N-[(cyclopentyloxy)carbonyl]-3-methyl-L-valyl-(4R)-N-{(1R)-3-hydroxy-1-[hydroxy(oxido)boranyl]propyl}-4-(isoquinolin-1-yloxy)-L-prolinamide"                              
C8D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R)-1-[[(2S,4R)-1-[(2S)-2-(cyclopentyloxycarbonylamino)-3,3-dimethyl-butanoyl]-4-isoquinolin-1-yloxy-pyrrolidin-2-yl]carbonylamino]-3-hydroxy-propyl]-hydroxy-borinate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8D "Create component"     2010-04-23 EBI  
C8D "Modify aromatic_flag" 2011-06-04 RCSB 
C8D "Modify descriptor"    2011-06-04 RCSB 
C8D "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C8D 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
