data_BOD
# 
_chem_comp.id                                    BOD 
_chem_comp.name                                  "5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H22 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-17 
_chem_comp.pdbx_modified_date                    2018-08-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        378.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BOD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6AOH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BOD C18 C1  C 0 1 Y N N 29.561 97.186  -72.504 5.451  -0.144 -1.037 C18 BOD 1  
BOD C17 C2  C 0 1 Y N N 29.400 95.466  -70.910 6.900  -1.357 0.284  C17 BOD 2  
BOD C16 C3  C 0 1 Y N N 31.475 96.478  -71.250 4.781  -0.970 1.108  C16 BOD 3  
BOD C12 C4  C 0 1 N N N 32.691 98.972  -72.010 2.157  -0.740 -0.267 C12 BOD 4  
BOD C11 C5  C 0 1 N N N 33.360 100.094 -72.794 0.799  -0.087 -0.535 C11 BOD 5  
BOD C9  C6  C 0 1 Y N N 35.123 99.038  -74.202 -0.754 1.459  0.349  C9  BOD 6  
BOD N5  N1  N 0 1 Y N N 28.831 96.261  -71.845 6.642  -0.696 -0.835 N5  BOD 7  
BOD C13 C7  C 0 1 N N N 31.584 98.437  -74.315 2.909  1.279  0.837  C13 BOD 8  
BOD C8  C8  C 0 1 Y N N 35.446 98.384  -75.389 -0.892 2.839  0.253  C8  BOD 9  
BOD C6  C9  C 0 1 Y N N 37.741 98.261  -74.710 -3.262 2.597  0.007  C6  BOD 10 
BOD N7  N2  N 0 1 N N N 28.647 94.546  -70.263 8.155  -1.921 0.461  N7  BOD 11 
BOD C4  C10 C 0 1 Y N N 38.294 99.773  -71.397 -4.226 -1.043 0.124  C4  BOD 12 
BOD N1  N3  N 0 1 Y N N 39.346 99.959  -70.586 -5.321 -1.780 0.048  N1  BOD 13 
BOD C2  C11 C 0 1 Y N N 39.772 98.698  -72.959 -5.607 0.899  -0.151 C2  BOD 14 
BOD C3  C12 C 0 1 Y N N 38.484 99.131  -72.621 -4.336 0.346  0.026  C3  BOD 15 
BOD N4  N4  N 0 1 Y N N 30.714 95.577  -70.617 5.993  -1.494 1.238  N4  BOD 16 
BOD N6  N5  N 0 1 N N N 28.933 97.954  -73.430 5.183  0.543  -2.213 N6  BOD 17 
BOD C15 C13 C 0 1 Y N N 30.918 97.315  -72.217 4.468  -0.271 -0.047 C15 BOD 18 
BOD N3  N6  N 0 1 N N N 31.739 98.254  -72.863 3.196  0.298  -0.220 N3  BOD 19 
BOD C14 C14 C 0 1 N N N 32.767 99.124  -75.001 1.550  1.932  0.568  C14 BOD 20 
BOD N2  N7  N 0 1 N N N 33.784 99.413  -73.999 0.512  0.893  0.521  N2  BOD 21 
BOD C7  C15 C 0 1 Y N N 36.753 97.998  -75.653 -2.142 3.401  0.083  C7  BOD 22 
BOD C10 C16 C 0 1 Y N N 36.121 99.302  -73.253 -1.874 0.644  0.279  C10 BOD 23 
BOD C5  C17 C 0 1 Y N N 37.438 98.905  -73.510 -3.134 1.212  0.107  C5  BOD 24 
BOD N   N8  N 0 1 Y N N 40.798 98.903  -72.125 -6.651 0.093  -0.228 N   BOD 25 
BOD C1  C18 C 0 1 Y N N 40.588 99.531  -70.943 -6.507 -1.218 -0.125 C1  BOD 26 
BOD O   O1  O 0 1 N N N 41.660 99.724  -70.109 -7.603 -2.009 -0.210 O   BOD 27 
BOD C   C19 C 0 1 N N N 41.632 100.703 -69.056 -7.396 -3.419 -0.093 C   BOD 28 
BOD H1  H1  H 0 1 N N N 32.525 96.557  -71.011 4.048  -1.088 1.892  H1  BOD 29 
BOD H2  H2  H 0 1 N N N 32.156 99.399  -71.149 2.125  -1.266 0.688  H2  BOD 30 
BOD H3  H3  H 0 1 N N N 33.459 98.270  -71.653 2.385  -1.447 -1.064 H3  BOD 31 
BOD H4  H4  H 0 1 N N N 34.220 100.507 -72.245 0.822  0.416  -1.502 H4  BOD 32 
BOD H5  H5  H 0 1 N N N 32.648 100.901 -73.021 0.023  -0.853 -0.542 H5  BOD 33 
BOD H6  H6  H 0 1 N N N 30.685 99.046  -74.490 2.886  0.776  1.803  H6  BOD 34 
BOD H7  H7  H 0 1 N N N 31.450 97.446  -74.773 3.686  2.043  0.844  H7  BOD 35 
BOD H8  H8  H 0 1 N N N 34.671 98.175  -76.112 -0.019 3.473  0.312  H8  BOD 36 
BOD H9  H9  H 0 1 N N N 38.759 97.962  -74.910 -4.238 3.040  -0.126 H9  BOD 37 
BOD H10 H10 H 0 1 N N N 27.705 94.591  -70.596 8.358  -2.407 1.276  H10 BOD 38 
BOD H11 H11 H 0 1 N N N 29.017 93.633  -70.433 8.830  -1.828 -0.229 H11 BOD 39 
BOD H12 H12 H 0 1 N N N 37.312 100.116 -71.106 -3.261 -1.508 0.266  H12 BOD 40 
BOD H13 H13 H 0 1 N N N 39.939 98.195  -73.900 -5.733 1.969  -0.231 H13 BOD 41 
BOD H14 H14 H 0 1 N N N 27.968 97.695  -73.479 4.310  0.940  -2.354 H14 BOD 42 
BOD H15 H15 H 0 1 N N N 29.007 98.917  -73.170 5.870  0.626  -2.893 H15 BOD 43 
BOD H16 H16 H 0 1 N N N 33.185 98.460  -75.772 1.322  2.638  1.366  H16 BOD 44 
BOD H17 H17 H 0 1 N N N 32.431 100.061 -75.468 1.582  2.458  -0.386 H17 BOD 45 
BOD H18 H18 H 0 1 N N N 37.000 97.500  -76.579 -2.244 4.474  0.010  H18 BOD 46 
BOD H19 H19 H 0 1 N N N 35.875 99.808  -72.331 -1.770 -0.428 0.356  H19 BOD 47 
BOD H20 H20 H 0 1 N N N 42.590 100.688 -68.515 -8.353 -3.934 -0.179 H20 BOD 48 
BOD H21 H21 H 0 1 N N N 41.470 101.702 -69.488 -6.730 -3.755 -0.887 H21 BOD 49 
BOD H22 H22 H 0 1 N N N 40.814 100.468 -68.359 -6.949 -3.641 0.876  H22 BOD 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BOD C7  C8  DOUB Y N 1  
BOD C7  C6  SING Y N 2  
BOD C8  C9  SING Y N 3  
BOD C14 C13 SING N N 4  
BOD C14 N2  SING N N 5  
BOD C6  C5  DOUB Y N 6  
BOD C13 N3  SING N N 7  
BOD C9  N2  SING N N 8  
BOD C9  C10 DOUB Y N 9  
BOD N2  C11 SING N N 10 
BOD C5  C10 SING Y N 11 
BOD C5  C3  SING N N 12 
BOD N6  C18 SING N N 13 
BOD C2  C3  DOUB Y N 14 
BOD C2  N   SING Y N 15 
BOD N3  C15 SING N N 16 
BOD N3  C12 SING N N 17 
BOD C11 C12 SING N N 18 
BOD C3  C4  SING Y N 19 
BOD C18 C15 DOUB Y N 20 
BOD C18 N5  SING Y N 21 
BOD C15 C16 SING Y N 22 
BOD N   C1  DOUB Y N 23 
BOD N5  C17 DOUB Y N 24 
BOD C4  N1  DOUB Y N 25 
BOD C16 N4  DOUB Y N 26 
BOD C1  N1  SING Y N 27 
BOD C1  O   SING N N 28 
BOD C17 N4  SING Y N 29 
BOD C17 N7  SING N N 30 
BOD O   C   SING N N 31 
BOD C16 H1  SING N N 32 
BOD C12 H2  SING N N 33 
BOD C12 H3  SING N N 34 
BOD C11 H4  SING N N 35 
BOD C11 H5  SING N N 36 
BOD C13 H6  SING N N 37 
BOD C13 H7  SING N N 38 
BOD C8  H8  SING N N 39 
BOD C6  H9  SING N N 40 
BOD N7  H10 SING N N 41 
BOD N7  H11 SING N N 42 
BOD C4  H12 SING N N 43 
BOD C2  H13 SING N N 44 
BOD N6  H14 SING N N 45 
BOD N6  H15 SING N N 46 
BOD C14 H16 SING N N 47 
BOD C14 H17 SING N N 48 
BOD C7  H18 SING N N 49 
BOD C10 H19 SING N N 50 
BOD C   H20 SING N N 51 
BOD C   H21 SING N N 52 
BOD C   H22 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BOD SMILES           ACDLabs              12.01 "c1(c(cnc(N)n1)N4CCN(c2cc(ccc2)c3cnc(nc3)OC)CC4)N"                                                                                                 
BOD InChI            InChI                1.03  "InChI=1S/C19H22N8O/c1-28-19-23-10-14(11-24-19)13-3-2-4-15(9-13)26-5-7-27(8-6-26)16-12-22-18(21)25-17(16)20/h2-4,9-12H,5-8H2,1H3,(H4,20,21,22,25)" 
BOD InChIKey         InChI                1.03  GUZBZPCNAJDYMO-UHFFFAOYSA-N                                                                                                                        
BOD SMILES_CANONICAL CACTVS               3.385 "COc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(N)nc4N"                                                                                                     
BOD SMILES           CACTVS               3.385 "COc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(N)nc4N"                                                                                                     
BOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(nc4N)N"                                                                                                     
BOD SMILES           "OpenEye OEToolkits" 2.0.6 "COc1ncc(cn1)c2cccc(c2)N3CCN(CC3)c4cnc(nc4N)N"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BOD "SYSTEMATIC NAME" ACDLabs              12.01 "5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine" 
BOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl]pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BOD "Create component" 2017-08-17 RCSB 
BOD "Initial release"  2018-08-22 RCSB 
# 
