data_B8D
#

_chem_comp.id                                   B8D
_chem_comp.name                                 4-O-methyl-alpha-D-glucopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O6"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "4-O-methyl-alpha-D-glucose; 4-O-methyl-D-glucose; 4-O-methyl-glucose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-08-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       194.182
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B8D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3IJ7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  B8D  4-O-methyl-alpha-D-glucose  PDB  ?  
2  B8D  4-O-methyl-D-glucose        PDB  ?  
3  B8D  4-O-methyl-glucose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8D  O1    OA4   O  0  1  N  Y  N   9.833  46.895  41.581  -0.907   2.049   1.135  O1    B8D   1  
B8D  C1    CJ1   C  0  1  N  N  S   9.319  47.203  42.887  -0.832   1.740  -0.258  C1    B8D   2  
B8D  C2    CJ2   C  0  1  N  N  R   8.734  48.649  43.016  -1.686   0.504  -0.554  C2    B8D   3  
B8D  O2    OJ2   O  0  1  N  N  N   7.702  48.873  42.080  -3.034   0.746  -0.147  O2    B8D   4  
B8D  C3    CJ3   C  0  1  N  N  R   9.879  49.699  42.783  -1.123  -0.692   0.218  C3    B8D   5  
B8D  O3    OJ3   O  0  1  N  N  N   9.370  51.019  42.901  -1.869  -1.867  -0.109  O3    B8D   6  
B8D  C4    CJ4   C  0  1  N  N  S  11.080  49.472  43.793   0.345  -0.893  -0.171  C4    B8D   7  
B8D  O4    OJ4   O  0  1  N  N  N  12.243  50.209  43.348   0.901  -1.962   0.597  O4    B8D   8  
B8D  C5    CJ5   C  0  1  N  N  R  11.457  47.946  43.843   1.120   0.397   0.110  C5    B8D   9  
B8D  O5    OJ5   O  0  1  N  N  N  10.317  47.074  43.902   0.526   1.476  -0.615  O5    B8D  10  
B8D  C6    CJ6   C  0  1  N  N  N  12.372  47.625  45.035   2.575   0.225  -0.333  C6    B8D  11  
B8D  O6    OJ6   O  0  1  N  N  N  11.637  47.762  46.251   3.325   1.384   0.035  O6    B8D  12  
B8D  CJ7   CJ7   C  0  1  N  N  N  12.827  51.145  44.295   0.767  -3.247  -0.013  CJ7   B8D  13  
B8D  HO1   HOA4  H  0  1  N  Y  N  10.170  46.007  41.574  -0.389   2.823   1.395  HO1   B8D  14  
B8D  H1    HJ1   H  0  1  N  N  N   8.511  46.469  43.025  -1.202   2.585  -0.839  H1    B8D  15  
B8D  H2    HJ2   H  0  1  N  N  N   8.314  48.758  44.027  -1.661   0.292  -1.623  H2    B8D  16  
B8D  HO2   HOJ2  H  0  1  N  Y  N   7.368  49.756  42.182  -3.451   1.495  -0.594  HO2   B8D  17  
B8D  H3    HJ3   H  0  1  N  N  N  10.267  49.560  41.763  -1.194  -0.502   1.289  H3    B8D  18  
B8D  HO3   HOJ3  H  0  1  N  Y  N  10.072  51.643  42.758  -2.810  -1.807   0.105  HO3   B8D  19  
B8D  H4    HJ4   H  0  1  N  N  N  10.768  49.819  44.789   0.411  -1.133  -1.232  H4    B8D  20  
B8D  H5    HJ5   H  0  1  N  N  N  11.985  47.760  42.896   1.088   0.615   1.177  H5    B8D  21  
B8D  H61   HJ6   H  0  1  N  N  N  12.742  46.593  44.945   3.001  -0.653   0.153  H61   B8D  22  
B8D  H62   HJ6A  H  0  1  N  N  N  13.224  48.321  45.041   2.613   0.095  -1.414  H62   B8D  23  
B8D  HO6   HOJ6  H  0  1  N  Y  N  12.203  47.563  46.988   4.258   1.344  -0.215  HO6   B8D  24  
B8D  HJ7   HJ7   H  0  1  N  N  N  13.698  51.636  43.836   1.214  -4.004   0.632  HJ7   B8D  25  
B8D  HJ7A  HJ7A  H  0  0  N  N  N  12.080  51.904  44.568  -0.290  -3.471  -0.158  HJ7A  B8D  26  
B8D  HJ7B  HJ7B  H  0  0  N  N  N  13.145  50.603  45.197   1.274  -3.247  -0.977  HJ7B  B8D  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8D  O1   C1    SING  N  N   1  
B8D  O1   HO1   SING  N  N   2  
B8D  C1   C2    SING  N  N   3  
B8D  C1   O5    SING  N  N   4  
B8D  C1   H1    SING  N  N   5  
B8D  O2   C2    SING  N  N   6  
B8D  C3   C2    SING  N  N   7  
B8D  C2   H2    SING  N  N   8  
B8D  O2   HO2   SING  N  N   9  
B8D  C3   O3    SING  N  N  10  
B8D  C3   C4    SING  N  N  11  
B8D  C3   H3    SING  N  N  12  
B8D  O3   HO3   SING  N  N  13  
B8D  O4   C4    SING  N  N  14  
B8D  C4   C5    SING  N  N  15  
B8D  C4   H4    SING  N  N  16  
B8D  O4   CJ7   SING  N  N  17  
B8D  C5   O5    SING  N  N  18  
B8D  C5   C6    SING  N  N  19  
B8D  C5   H5    SING  N  N  20  
B8D  C6   O6    SING  N  N  21  
B8D  C6   H61   SING  N  N  22  
B8D  C6   H62   SING  N  N  23  
B8D  O6   HO6   SING  N  N  24  
B8D  CJ7  HJ7   SING  N  N  25  
B8D  CJ7  HJ7A  SING  N  N  26  
B8D  CJ7  HJ7B  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8D  SMILES            ACDLabs               11.02  "OC1C(OC)C(OC(O)C1O)CO"  
B8D  SMILES_CANONICAL  CACTVS                3.352  "CO[C@H]1[C@H](O)[C@@H](O)[C@@H](O)O[C@@H]1CO"  
B8D  SMILES            CACTVS                3.352  "CO[CH]1[CH](O)[CH](O)[CH](O)O[CH]1CO"  
B8D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CO[C@@H]1[C@H](O[C@@H]([C@@H]([C@H]1O)O)O)CO"  
B8D  SMILES            "OpenEye OEToolkits"  1.7.0  "COC1C(OC(C(C1O)O)O)CO"  
B8D  InChI             InChI                 1.03   "InChI=1S/C7H14O6/c1-12-6-3(2-8)13-7(11)5(10)4(6)9/h3-11H,2H2,1H3/t3-,4-,5-,6-,7+/m1/s1"  
B8D  InChIKey          InChI                 1.03   UGQUOHHDWLIZQM-GKHCUFPYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B8D  "SYSTEMATIC NAME"                      ACDLabs               11.02  4-O-methyl-alpha-D-glucopyranose  
B8D  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.6.1  "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-5-methoxy-oxane-2,3,4-triol"  
B8D  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcp[4Me]a  
B8D  "COMMON NAME"                          GMML                  1.0    4-methyl-a-D-glucopyranose  
#
_pdbx_chem_comp_related.comp_id            B8D
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  B8D  C1   GLC  C1   "Carbohydrate core"  
 2  B8D  C2   GLC  C2   "Carbohydrate core"  
 3  B8D  C3   GLC  C3   "Carbohydrate core"  
 4  B8D  C4   GLC  C4   "Carbohydrate core"  
 5  B8D  C5   GLC  C5   "Carbohydrate core"  
 6  B8D  C6   GLC  C6   "Carbohydrate core"  
 7  B8D  O1   GLC  O1   "Carbohydrate core"  
 8  B8D  O2   GLC  O2   "Carbohydrate core"  
 9  B8D  O3   GLC  O3   "Carbohydrate core"  
10  B8D  O4   GLC  O4   "Carbohydrate core"  
11  B8D  O5   GLC  O5   "Carbohydrate core"  
12  B8D  O6   GLC  O6   "Carbohydrate core"  
13  B8D  H1   GLC  H1   "Carbohydrate core"  
14  B8D  H2   GLC  H2   "Carbohydrate core"  
15  B8D  H3   GLC  H3   "Carbohydrate core"  
16  B8D  H4   GLC  H4   "Carbohydrate core"  
17  B8D  H5   GLC  H5   "Carbohydrate core"  
18  B8D  H61  GLC  H61  "Carbohydrate core"  
19  B8D  H62  GLC  H62  "Carbohydrate core"  
20  B8D  HO1  GLC  HO1  "Carbohydrate core"  
21  B8D  HO2  GLC  HO2  "Carbohydrate core"  
22  B8D  HO3  GLC  HO3  "Carbohydrate core"  
23  B8D  HO6  GLC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
B8D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
B8D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
B8D  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
B8D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8D  "Create component"          2009-08-18  RCSB  
B8D  "Modify descriptor"         2011-06-04  RCSB  
B8D  "Other modification"        2020-07-03  RCSB  
B8D  "Modify parent residue"     2020-07-17  RCSB  
B8D  "Modify synonyms"           2020-07-17  RCSB  
B8D  "Modify linking type"       2020-07-17  RCSB  
B8D  "Modify atom id"            2020-07-17  RCSB  
B8D  "Modify component atom id"  2020-07-17  RCSB  
B8D  "Modify leaving atom flag"  2020-07-17  RCSB  
##
