data_AAD
#

_chem_comp.id                                   AAD
_chem_comp.name                                 "(2-AMINOOXY-ETHYL)-[5-(6-AMINO-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHYL]-METHYL-SULFONIUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H21 N6 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;5'-[[2-(AMINOOXY)ETHYL]METHYLSULFONIO]-5'-DEOXY-ADENOSINE;
[2-(AMINO-OXY)ETHYL](5'-DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM
;

_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2002-07-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       357.409
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AAD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1M4N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AAD  "C4'"   C4*   C  0  1  N  N  S  19.806   2.564  26.510  -0.341   2.678  -0.368  "C4'"   AAD   1  
AAD  "O4'"   O4*   O  0  1  N  N  N  18.470   2.147  26.964  -1.426   2.441   0.555  "O4'"   AAD   2  
AAD  "C3'"   C3*   C  0  1  N  N  S  20.157   3.802  27.366   0.868   1.960   0.222  "C3'"   AAD   3  
AAD  "O3'"   O3*   O  0  1  N  N  N  19.990   5.020  26.690   1.456   2.721   1.272  "O3'"   AAD   4  
AAD  "C2'"   C2*   C  0  1  N  N  R  19.277   3.668  28.644   0.205   0.724   0.798  "C2'"   AAD   5  
AAD  "O2'"   O2*   O  0  1  N  N  N  19.105   4.730  29.487   0.983   0.089   1.793  "O2'"   AAD   6  
AAD  "C1'"   C1*   C  0  1  N  N  R  18.039   3.050  28.047  -1.085   1.300   1.371  "C1'"   AAD   7  
AAD  N9      N9    N  0  1  Y  N  N  17.314   2.121  28.923  -2.202   0.359   1.377  N9      AAD   8  
AAD  C8      C8    C  0  1  Y  N  N  16.012   2.346  29.312  -2.572  -0.449   2.421  C8      AAD   9  
AAD  N7      N7    N  0  1  Y  N  N  15.609   1.450  30.131  -3.620  -1.191   2.128  N7      AAD  10  
AAD  C5      C5    C  0  1  Y  N  N  16.685   0.586  30.294  -3.944  -0.850   0.839  C5      AAD  11  
AAD  C6      C6    C  0  1  Y  N  N  16.818  -0.617  31.109  -4.947  -1.284  -0.022  C6      AAD  12  
AAD  N6      N6    N  0  1  N  N  N  15.820  -1.046  31.857  -5.873  -2.258   0.388  N6      AAD  13  
AAD  N1      N1    N  0  1  Y  N  N  18.022  -1.208  31.019  -5.021  -0.754  -1.267  N1      AAD  14  
AAD  C2      C2    C  0  1  Y  N  N  19.062  -0.769  30.251  -4.100   0.181  -1.605  C2      AAD  15  
AAD  N3      N3    N  0  1  Y  N  N  18.981   0.330  29.492  -3.087   0.680  -0.863  N3      AAD  16  
AAD  C4      C4    C  0  1  Y  N  N  17.773   0.952  29.561  -3.074   0.113   0.353  C4      AAD  17  
AAD  N2      N2    N  0  1  N  N  N       ?       ?       ?  -4.097   6.227  -4.676  N2      AAD  18  
AAD  O2      O2    O  0  1  N  N  N       ?       ?       ?  -3.450   5.326  -3.736  O2      AAD  19  
AAD  CB      CB    C  0  1  N  N  N       ?       ?       ?  -2.048   5.407  -3.965  CB      AAD  20  
AAD  CG      CG    C  0  1  N  N  N       ?       ?       ?  -1.320   4.483  -3.007  CG      AAD  21  
AAD  SD      SD    S  1  1  N  N  S       ?       ?       ?  -1.687   4.906  -1.289  SD      AAD  22  
AAD  CE      CE    C  0  1  N  N  N       ?       ?       ?  -1.067   6.602  -1.356  CE      AAD  23  
AAD  "C5'"   C5*   C  0  1  N  N  N       ?       ?       ?  -0.185   4.173  -0.578  "C5'"   AAD  24  
AAD  HC4     HC4   H  0  1  N  N  N  20.845   2.206  26.458  -0.631   2.210  -1.316  HC4     AAD  25  
AAD  HC3     HC3   H  0  1  N  N  N  21.227   3.824  27.619   1.646   1.736  -0.513  HC3     AAD  26  
AAD  HO3     HO3   H  0  1  N  N  N  19.952   5.730  27.320   2.023   3.385   0.849  HO3     AAD  27  
AAD  HC2     HC2   H  0  1  N  N  N  19.776   3.077  29.427  -0.007   0.000   0.002  HC2     AAD  28  
AAD  HO2     HO2   H  0  1  N  N  N  19.065   4.420  30.384   1.802   0.606   1.893  HO2     AAD  29  
AAD  HC1     HC1   H  0  1  N  N  N  17.403   3.907  27.782  -0.977   1.630   2.409  HC1     AAD  30  
AAD  HC8     HC8   H  0  1  N  N  N  15.408   3.173  28.969  -2.042  -0.451   3.364  HC8     AAD  31  
AAD  HN61    1HN6  H  0  0  N  N  N  16.133  -1.155  32.801  -6.044  -2.395   1.366  HN61    AAD  32  
AAD  HN62    2HN6  H  0  0  N  N  N  15.073  -0.382  31.828  -6.281  -2.868  -0.295  HN62    AAD  33  
AAD  HC2A    HC2A  H  0  0  N  N  N  19.985  -1.330  30.256  -4.189   0.583  -2.608  HC2A    AAD  34  
AAD  HN21    1HN2  H  0  0  N  N  N       ?       ?       ?  -4.649   6.797  -4.036  HN21    AAD  35  
AAD  HN22    2HN2  H  0  0  N  N  N       ?       ?       ?  -4.748   5.587  -5.129  HN22    AAD  36  
AAD  HCB1    1HCB  H  0  0  N  N  N       ?       ?       ?  -1.742   6.443  -3.784  HCB1    AAD  37  
AAD  HCB2    2HCB  H  0  0  N  N  N       ?       ?       ?  -1.845   5.158  -5.011  HCB2    AAD  38  
AAD  HCG1    1HCG  H  0  0  N  N  N       ?       ?       ?  -1.642   3.448  -3.153  HCG1    AAD  39  
AAD  HCG2    2HCG  H  0  0  N  N  N       ?       ?       ?  -0.235   4.547  -3.134  HCG2    AAD  40  
AAD  HCE1    1HCE  H  0  0  N  N  N       ?       ?       ?  -0.468   6.802  -0.465  HCE1    AAD  41  
AAD  HCE2    2HCE  H  0  0  N  N  N       ?       ?       ?  -1.915   7.290  -1.395  HCE2    AAD  42  
AAD  HCE3    3HCE  H  0  0  N  N  N       ?       ?       ?  -0.452   6.721  -2.250  HCE3    AAD  43  
AAD  HC51    1HC5  H  0  0  N  N  N       ?       ?       ?   0.642   4.379  -1.262  HC51    AAD  44  
AAD  HC52    2HC5  H  0  0  N  N  N       ?       ?       ?   0.013   4.675   0.373  HC52    AAD  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AAD  "C4'"  "O4'"   SING  N  N   1  
AAD  "C4'"  "C3'"   SING  N  N   2  
AAD  "C4'"  "C5'"   SING  N  N   3  
AAD  "C4'"  HC4     SING  N  N   4  
AAD  "O4'"  "C1'"   SING  N  N   5  
AAD  "C3'"  "O3'"   SING  N  N   6  
AAD  "C3'"  "C2'"   SING  N  N   7  
AAD  "C3'"  HC3     SING  N  N   8  
AAD  "O3'"  HO3     SING  N  N   9  
AAD  "C2'"  "O2'"   SING  N  N  10  
AAD  "C2'"  "C1'"   SING  N  N  11  
AAD  "C2'"  HC2     SING  N  N  12  
AAD  "O2'"  HO2     SING  N  N  13  
AAD  "C1'"  N9      SING  N  N  14  
AAD  "C1'"  HC1     SING  N  N  15  
AAD  N9     C8      SING  Y  N  16  
AAD  N9     C4      SING  Y  N  17  
AAD  C8     N7      DOUB  Y  N  18  
AAD  C8     HC8     SING  N  N  19  
AAD  N7     C5      SING  Y  N  20  
AAD  C5     C6      DOUB  Y  N  21  
AAD  C5     C4      SING  Y  N  22  
AAD  C6     N6      SING  N  N  23  
AAD  C6     N1      SING  Y  N  24  
AAD  N6     HN61    SING  N  N  25  
AAD  N6     HN62    SING  N  N  26  
AAD  N1     C2      DOUB  Y  N  27  
AAD  C2     N3      SING  Y  N  28  
AAD  C2     HC2A    SING  N  N  29  
AAD  N3     C4      DOUB  Y  N  30  
AAD  N2     O2      SING  N  N  31  
AAD  N2     HN21    SING  N  N  32  
AAD  N2     HN22    SING  N  N  33  
AAD  O2     CB      SING  N  N  34  
AAD  CB     CG      SING  N  N  35  
AAD  CB     HCB1    SING  N  N  36  
AAD  CB     HCB2    SING  N  N  37  
AAD  CG     SD      SING  N  N  38  
AAD  CG     HCG1    SING  N  N  39  
AAD  CG     HCG2    SING  N  N  40  
AAD  SD     CE      SING  N  N  41  
AAD  SD     "C5'"   SING  N  N  42  
AAD  CE     HCE1    SING  N  N  43  
AAD  CE     HCE2    SING  N  N  44  
AAD  CE     HCE3    SING  N  N  45  
AAD  "C5'"  HC51    SING  N  N  46  
AAD  "C5'"  HC52    SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AAD  SMILES            ACDLabs               10.04  "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)C[S+](CCON)C)N"  
AAD  SMILES_CANONICAL  CACTVS                3.341  "C[S+](CCON)C[C@@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
AAD  SMILES            CACTVS                3.341  "C[S+](CCON)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
AAD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[S@@+](CCON)C[C@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
AAD  SMILES            "OpenEye OEToolkits"  1.5.0  "C[S+](CCON)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
AAD  InChI             InChI                 1.03   "InChI=1S/C13H21N6O4S/c1-24(3-2-22-15)4-7-9(20)10(21)13(23-7)19-6-18-8-11(14)16-5-17-12(8)19/h5-7,9-10,13,20-21H,2-4,15H2,1H3,(H2,14,16,17)/q+1/t7-,9+,10+,13+,24?/m0/s1"  
AAD  InChIKey          InChI                 1.03   RMAOLICYOBWFLA-OCVRIJAPSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AAD  "SYSTEMATIC NAME"  ACDLabs               10.04  "[2-(aminooxy)ethyl]{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}methylsulfonium (non-preferred name)"  
AAD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-aminooxyethyl-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-sulfanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AAD  "Create component"   2002-07-09  RCSB  
AAD  "Modify descriptor"  2011-06-04  RCSB  
AAD  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AAD  "5'-[[2-(AMINOOXY)ETHYL]METHYLSULFONIO]-5'-DEOXY-ADENOSINE"      ?  ?  
2  AAD  "[2-(AMINO-OXY)ETHYL](5'-DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM"  ?  ?  
##
