data_A7D
# 
_chem_comp.id                                    A7D 
_chem_comp.name                                  "5'-S-[(3R)-3,4-dihydroxybutyl]-5'-thioadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        371.412 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A7D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IOE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A7D N1   N1   N 0 1 Y N N 13.744 9.557  -5.312 -6.396 1.304  0.701  N1   A7D 1  
A7D C2   C2   C 0 1 Y N N 12.757 9.208  -4.475 -5.956 0.185  1.245  C2   A7D 2  
A7D N3   N3   N 0 1 Y N N 12.944 9.286  -3.157 -4.727 -0.252 1.067  N3   A7D 3  
A7D C4   C4   C 0 1 Y N N 14.132 9.720  -2.643 -3.868 0.430  0.319  C4   A7D 4  
A7D C5   C5   C 0 1 Y N N 15.175 10.086 -3.493 -4.287 1.629  -0.283 C5   A7D 5  
A7D C6   C6   C 0 1 Y N N 14.951 9.991  -4.864 -5.609 2.054  -0.064 C6   A7D 6  
A7D N6   N6   N 0 1 N N N 15.925 10.326 -5.713 -6.079 3.225  -0.631 N6   A7D 7  
A7D N7   N7   N 0 1 Y N N 16.205 10.475 -2.744 -3.233 2.116  -0.980 N7   A7D 8  
A7D C8   C8   C 0 1 Y N N 15.843 10.358 -1.463 -2.218 1.313  -0.848 C8   A7D 9  
A7D N9   N9   N 0 1 Y N N 14.586 9.903  -1.400 -2.559 0.258  -0.055 N9   A7D 10 
A7D OAB  OAB  O 0 1 N N N 14.864 9.898  9.521  8.948  1.517  0.184  OAB  A7D 11 
A7D OAC  OAC  O 0 1 N N N 16.363 7.870  7.421  6.468  1.501  -1.268 OAC  A7D 12 
A7D OAD  OAD  O 0 1 N N N 12.524 8.173  1.827  -0.364 -3.952 -0.371 OAD  A7D 13 
A7D OAE  OAE  O 0 1 N N N 14.512 7.226  -0.060 -2.723 -3.016 -0.162 OAE  A7D 14 
A7D CAH  CAH  C 0 1 N N N 14.663 8.506  9.175  7.673  1.469  0.827  CAH  A7D 15 
A7D CAI  CAI  C 0 1 N N N 14.751 9.262  5.317  4.385  -0.255 -0.189 CAI  A7D 16 
A7D CAJ  CAJ  C 0 1 N N N 14.437 9.394  6.828  5.343  0.581  0.663  CAJ  A7D 17 
A7D CAK  CAK  C 0 1 N N N 15.210 10.542 2.779  1.823  -1.446 -0.463 CAK  A7D 18 
A7D OAO  OAO  O 0 1 N N N 13.810 10.721 0.729  -0.301 -0.464 0.237  OAO  A7D 19 
A7D SAP  SAP  S 0 1 N N N 14.976 10.926 4.541  2.808  -0.446 0.686  SAP  A7D 20 
A7D CAT  CAT  C 0 1 N N R 14.938 8.206  7.674  6.674  0.742  -0.075 CAT  A7D 21 
A7D CAU  CAU  C 0 1 N N S 13.880 8.610  1.919  -0.402 -2.590 -0.802 CAU  A7D 22 
A7D CAV  CAV  C 0 1 N N R 14.589 8.524  0.562  -1.833 -2.022 -0.676 CAV  A7D 23 
A7D CAW  CAW  C 0 1 N N S 13.880 10.134 2.089  0.439  -1.700 0.140  CAW  A7D 24 
A7D CAX  CAX  C 0 1 N N R 13.825 9.621  -0.206 -1.688 -0.856 0.327  CAX  A7D 25 
A7D H2   H2   H 0 1 N N N 11.811 8.864  -4.868 -6.630 -0.394 1.860  H2   A7D 26 
A7D HN6  HN6  H 0 1 N N N 15.606 10.201 -6.653 -6.993 3.508  -0.472 HN6  A7D 27 
A7D HN6A HN6A H 0 0 N N N 16.176 11.283 -5.571 -5.494 3.764  -1.187 HN6A A7D 28 
A7D H8   H8   H 0 1 N N N 16.466 10.593 -0.613 -1.248 1.461  -1.300 H8   A7D 29 
A7D HOAB HOAB H 0 0 N N N 14.683 10.024 10.445 9.632  1.965  0.701  HOAB A7D 30 
A7D HOAC HOAC H 0 0 N N N 16.488 7.694  6.496  6.118  2.389  -1.113 HOAC A7D 31 
A7D HOAD HOAD H 0 0 N N N 12.112 8.237  2.680  -0.923 -4.545 -0.891 HOAD A7D 32 
A7D HOAE HOAE H 0 0 N N N 14.970 7.245  -0.892 -2.805 -3.798 -0.725 HOAE A7D 33 
A7D HAH  HAH  H 0 1 N N N 15.350 7.897  9.780  7.762  0.936  1.774  HAH  A7D 34 
A7D HAHA HAHA H 0 0 N N N 13.617 8.243  9.394  7.321  2.484  1.013  HAHA A7D 35 
A7D HAI  HAI  H 0 1 N N N 15.677 8.681  5.193  4.214  0.247  -1.141 HAI  A7D 36 
A7D HAIA HAIA H 0 0 N N N 13.915 8.746  4.822  4.822  -1.237 -0.369 HAIA A7D 37 
A7D HAJ  HAJ  H 0 1 N N N 14.926 10.307 7.199  4.906  1.563  0.843  HAJ  A7D 38 
A7D HAJA HAJA H 0 0 N N N 13.345 9.459  6.945  5.514  0.079  1.615  HAJA A7D 39 
A7D HAK  HAK  H 0 1 N N N 15.608 11.435 2.275  1.716  -0.915 -1.408 HAK  A7D 40 
A7D HAKA HAKA H 0 0 N N N 15.921 9.707  2.693  2.324  -2.399 -0.636 HAKA A7D 41 
A7D HAT  HAT  H 0 1 N N N 14.380 7.307  7.374  7.067  -0.241 -0.334 HAT  A7D 42 
A7D HAU  HAU  H 0 1 N N N 14.343 8.010  2.716  -0.047 -2.506 -1.829 HAU  A7D 43 
A7D HAV  HAV  H 0 1 N N N 15.679 8.667  0.610  -2.186 -1.657 -1.640 HAV  A7D 44 
A7D HAW  HAW  H 0 1 N N N 13.034 10.484 2.699  0.533  -2.165 1.121  HAW  A7D 45 
A7D HAX  HAX  H 0 1 N N N 12.803 9.373  -0.528 -1.923 -1.191 1.338  HAX  A7D 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A7D N1  C2   DOUB Y N 1  
A7D N1  C6   SING Y N 2  
A7D C2  N3   SING Y N 3  
A7D N3  C4   DOUB Y N 4  
A7D C4  C5   SING Y N 5  
A7D C4  N9   SING Y N 6  
A7D C5  C6   DOUB Y N 7  
A7D C5  N7   SING Y N 8  
A7D C6  N6   SING N N 9  
A7D N7  C8   DOUB Y N 10 
A7D C8  N9   SING Y N 11 
A7D N9  CAX  SING N N 12 
A7D OAB CAH  SING N N 13 
A7D OAC CAT  SING N N 14 
A7D OAD CAU  SING N N 15 
A7D OAE CAV  SING N N 16 
A7D CAH CAT  SING N N 17 
A7D CAI CAJ  SING N N 18 
A7D CAI SAP  SING N N 19 
A7D CAJ CAT  SING N N 20 
A7D CAK SAP  SING N N 21 
A7D CAK CAW  SING N N 22 
A7D OAO CAW  SING N N 23 
A7D OAO CAX  SING N N 24 
A7D CAU CAV  SING N N 25 
A7D CAU CAW  SING N N 26 
A7D CAV CAX  SING N N 27 
A7D C2  H2   SING N N 28 
A7D N6  HN6  SING N N 29 
A7D N6  HN6A SING N N 30 
A7D C8  H8   SING N N 31 
A7D OAB HOAB SING N N 32 
A7D OAC HOAC SING N N 33 
A7D OAD HOAD SING N N 34 
A7D OAE HOAE SING N N 35 
A7D CAH HAH  SING N N 36 
A7D CAH HAHA SING N N 37 
A7D CAI HAI  SING N N 38 
A7D CAI HAIA SING N N 39 
A7D CAJ HAJ  SING N N 40 
A7D CAJ HAJA SING N N 41 
A7D CAK HAK  SING N N 42 
A7D CAK HAKA SING N N 43 
A7D CAT HAT  SING N N 44 
A7D CAU HAU  SING N N 45 
A7D CAV HAV  SING N N 46 
A7D CAW HAW  SING N N 47 
A7D CAX HAX  SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A7D SMILES           ACDLabs              11.02 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CSCCC(O)CO)N"                                                                                                                         
A7D SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCC[C@@H](O)CO)[C@@H](O)[C@H]3O"                                                                                                    
A7D SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCC[CH](O)CO)[CH](O)[CH]3O"                                                                                                            
A7D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@H](CO)O)O)O)N"                                                                                               
A7D SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(CO)O)O)O)N"                                                                                                                     
A7D InChI            InChI                1.03  "InChI=1S/C14H21N5O5S/c15-12-9-13(17-5-16-12)19(6-18-9)14-11(23)10(22)8(24-14)4-25-2-1-7(21)3-20/h5-8,10-11,14,20-23H,1-4H2,(H2,15,16,17)/t7-,8-,10-,11-,14-/m1/s1" 
A7D InChIKey         InChI                1.03  QSBLNOGMFRGVGL-BAYCTPFLSA-N                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A7D "SYSTEMATIC NAME" ACDLabs              11.02 "5'-S-[(3R)-3,4-dihydroxybutyl]-5'-thioadenosine"                                                 
A7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-[[(3R)-3,4-dihydroxybutyl]sulfanylmethyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A7D "Create component"     2009-08-19 RCSB 
A7D "Modify aromatic_flag" 2011-06-04 RCSB 
A7D "Modify descriptor"    2011-06-04 RCSB 
# 
