data_A1AMD
# 
_chem_comp.id                                    A1AMD 
_chem_comp.name                                  "(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-11 
_chem_comp.pdbx_modified_date                    2024-05-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.462 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AMD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H0B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AMD N1  N1  N 0 1 Y N N N N N 8.950  -6.916  18.532 0.062  -2.891 0.784  N1  A1AMD 1  
A1AMD N3  N2  N 0 1 Y N N N N N 5.134  -7.988  19.388 -3.543 -1.037 0.986  N3  A1AMD 2  
A1AMD C4  C1  C 0 1 Y N N N N N 8.474  -8.129  18.175 -0.114 -1.673 0.280  C4  A1AMD 3  
A1AMD C5  C2  C 0 1 Y N N N N N 8.111  -6.082  19.156 -0.933 -3.537 1.367  C5  A1AMD 4  
A1AMD C6  C3  C 0 1 Y N N N N N 6.377  -7.480  19.116 -2.416 -1.814 1.013  C6  A1AMD 5  
A1AMD C7  C4  C 0 1 Y N N N N N 5.069  -9.286  18.911 -3.272 0.162  0.361  C7  A1AMD 6  
A1AMD C8  C5  C 0 1 Y N N N N N 3.913  -10.144 19.158 -4.246 1.251  0.148  C8  A1AMD 7  
A1AMD C10 C6  C 0 1 N N N N N N 1.794  -13.104 18.907 -7.494 2.699  -0.651 C10 A1AMD 8  
A1AMD C13 C7  C 0 1 Y N N N N N 6.268  -9.608  18.313 -1.970 0.185  -0.027 C13 A1AMD 9  
A1AMD C15 C8  C 0 1 Y N N N N N 10.819 -8.612  15.655 3.303  -0.659 0.041  C15 A1AMD 10 
A1AMD C17 C9  C 0 1 Y N N N N N 11.320 -7.366  13.679 4.995  -0.038 1.607  C17 A1AMD 11 
A1AMD C20 C10 C 0 1 N N N N N N 10.215 -10.753 11.540 5.316  3.533  -0.416 C20 A1AMD 12 
A1AMD C21 C11 C 0 1 N N N N N N 10.291 -9.377  10.837 6.563  2.971  0.281  C21 A1AMD 13 
A1AMD N6  N3  N 0 1 N N N N N N 5.087  -12.876 17.030 -6.827 -1.104 -0.631 N6  A1AMD 14 
A1AMD C12 C12 C 0 1 N N N N N N 4.477  -12.256 17.778 -6.278 -0.126 -0.446 C12 A1AMD 15 
A1AMD C11 C13 C 0 1 Y N N N N N 3.709  -11.449 18.671 -5.586 1.105  -0.212 C11 A1AMD 16 
A1AMD N5  N4  N 0 1 Y N N N N N 2.494  -11.847 19.139 -6.111 2.365  -0.300 N5  A1AMD 17 
A1AMD N4  N5  N 0 1 Y N N N N N 1.900  -10.881 19.905 -5.097 3.280  0.006  N4  A1AMD 18 
A1AMD C9  C14 C 0 1 Y N N N N N 2.754  -9.866  19.911 -3.997 2.630  0.276  C9  A1AMD 19 
A1AMD C14 C15 C 0 1 Y N N N N N 7.118  -8.463  18.444 -1.387 -1.087 0.382  C14 A1AMD 20 
A1AMD N2  N6  N 0 1 Y N N N N N 6.824  -6.277  19.489 -2.140 -3.028 1.485  N2  A1AMD 21 
A1AMD N   N7  N 0 1 N N N N N N 9.304  -9.008  17.554 0.929  -1.001 -0.329 N   A1AMD 22 
A1AMD C3  C16 C 0 1 N N S N N N 10.684 -8.732  17.161 2.249  -1.629 -0.425 C3  A1AMD 23 
A1AMD C1  C17 C 0 1 N N N N N N 11.636 -9.812  17.739 2.523  -2.021 -1.879 C1  A1AMD 24 
A1AMD C2  C18 C 0 1 N N N N N N 13.073 -9.613  17.250 3.866  -2.749 -1.967 C2  A1AMD 25 
A1AMD C   C19 C 0 1 N N N N N N 11.597 -9.818  19.267 1.409  -2.944 -2.377 C   A1AMD 26 
A1AMD N7  N8  N 0 1 Y N N N N N 10.358 -9.651  14.944 3.521  0.445  -0.649 N7  A1AMD 27 
A1AMD C19 C20 C 0 1 Y N N N N N 10.378 -9.554  13.624 4.435  1.329  -0.282 C19 A1AMD 28 
A1AMD O   O1  O 0 1 N N N N N N 9.932  -10.658 12.957 4.619  2.447  -1.035 O   A1AMD 29 
A1AMD O1  O2  O 0 1 N N N N N N 11.001 -8.363  11.570 6.141  2.013  1.255  O1  A1AMD 30 
A1AMD C18 C21 C 0 1 Y N N N N N 10.865 -8.440  12.935 5.199  1.114  0.861  C18 A1AMD 31 
A1AMD C16 C22 C 0 1 Y N N N N N 11.307 -7.461  15.061 4.023  -0.934 1.186  C16 A1AMD 32 
A1AMD H1  H1  H 0 1 N N N N N N 4.395  -7.501  19.854 -4.404 -1.292 1.353  H1  A1AMD 33 
A1AMD H10 H2  H 0 1 N N N N N N 8.524  -5.122  19.429 -0.747 -4.525 1.762  H10 A1AMD 34 
A1AMD H13 H3  H 0 1 N N N N N N 0.822  -13.083 19.421 -8.099 2.741  0.254  H13 A1AMD 35 
A1AMD H14 H4  H 0 1 N N N N N N 1.634  -13.241 17.827 -7.518 3.668  -1.150 H14 A1AMD 36 
A1AMD H12 H5  H 0 1 N N N N N N 2.397  -13.937 19.297 -7.892 1.936  -1.320 H12 A1AMD 37 
A1AMD H15 H6  H 0 1 N N N N N N 6.519  -10.544 17.837 -1.465 0.990  -0.541 H15 A1AMD 38 
A1AMD H17 H7  H 0 1 N N N N N N 11.678 -6.471  13.192 5.576  -0.230 2.497  H17 A1AMD 39 
A1AMD H18 H8  H 0 1 N N N N N N 11.180 -11.265 11.410 4.670  4.013  0.319  H18 A1AMD 40 
A1AMD H19 H9  H 0 1 N N N N N N 9.419  -11.345 11.064 5.613  4.258  -1.173 H19 A1AMD 41 
A1AMD H20 H10 H 0 1 N N N N N N 10.794 -9.515  9.869  7.207  2.486  -0.453 H20 A1AMD 42 
A1AMD H21 H11 H 0 1 N N N N N N 9.264  -9.022  10.669 7.107  3.780  0.769  H21 A1AMD 43 
A1AMD H11 H12 H 0 1 N N N N N N 2.582  -8.936  20.432 -3.052 3.076  0.550  H11 A1AMD 44 
A1AMD H9  H13 H 0 1 N N N N N N 8.834  -9.266  16.710 0.788  -0.112 -0.692 H9  A1AMD 45 
A1AMD H   H14 H 0 1 N N N N N N 10.982 -7.768  17.599 2.273  -2.521 0.202  H   A1AMD 46 
A1AMD H5  H15 H 0 1 N N N N N N 11.287 -10.793 17.384 2.555  -1.123 -2.497 H5  A1AMD 47 
A1AMD H7  H16 H 0 1 N N N N N N 13.090 -9.610  16.150 3.860  -3.603 -1.291 H7  A1AMD 48 
A1AMD H6  H17 H 0 1 N N N N N N 13.458 -8.653  17.625 4.025  -3.094 -2.988 H6  A1AMD 49 
A1AMD H8  H18 H 0 1 N N N N N N 13.704 -10.433 17.624 4.668  -2.067 -1.684 H8  A1AMD 50 
A1AMD H3  H19 H 0 1 N N N N N N 10.561 -9.961  19.607 0.452  -2.425 -2.314 H3  A1AMD 51 
A1AMD H4  H20 H 0 1 N N N N N N 12.224 -10.638 19.646 1.604  -3.222 -3.412 H4  A1AMD 52 
A1AMD H2  H21 H 0 1 N N N N N N 11.978 -8.859  19.647 1.377  -3.841 -1.759 H2  A1AMD 53 
A1AMD H16 H22 H 0 1 N N N N N N 11.673 -6.646  15.668 3.834  -1.839 1.745  H16 A1AMD 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AMD C   C1  SING N N 1  
A1AMD C2  C1  SING N N 2  
A1AMD C1  C3  SING N N 3  
A1AMD C3  N   SING N N 4  
A1AMD N   C4  SING N N 5  
A1AMD C4  N1  DOUB Y N 6  
A1AMD N1  C5  SING Y N 7  
A1AMD C5  N2  DOUB Y N 8  
A1AMD N2  C6  SING Y N 9  
A1AMD C6  N3  SING Y N 10 
A1AMD N3  C7  SING Y N 11 
A1AMD C7  C8  SING N N 12 
A1AMD C8  C9  SING Y N 13 
A1AMD C9  N4  DOUB Y N 14 
A1AMD N4  N5  SING Y N 15 
A1AMD C10 N5  SING N N 16 
A1AMD N5  C11 SING Y N 17 
A1AMD C8  C11 DOUB Y N 18 
A1AMD C11 C12 SING N N 19 
A1AMD C12 N6  TRIP N N 20 
A1AMD C13 C7  DOUB Y N 21 
A1AMD C14 C13 SING Y N 22 
A1AMD C4  C14 SING Y N 23 
A1AMD C6  C14 DOUB Y N 24 
A1AMD C15 C3  SING N N 25 
A1AMD C15 C16 DOUB Y N 26 
A1AMD C16 C17 SING Y N 27 
A1AMD C17 C18 DOUB Y N 28 
A1AMD C18 C19 SING Y N 29 
A1AMD C19 N7  DOUB Y N 30 
A1AMD N7  C15 SING Y N 31 
A1AMD O   C19 SING N N 32 
A1AMD C20 O   SING N N 33 
A1AMD C21 C20 SING N N 34 
A1AMD O1  C21 SING N N 35 
A1AMD C18 O1  SING N N 36 
A1AMD N3  H1  SING N N 37 
A1AMD C5  H10 SING N N 38 
A1AMD C10 H13 SING N N 39 
A1AMD C10 H14 SING N N 40 
A1AMD C10 H12 SING N N 41 
A1AMD C13 H15 SING N N 42 
A1AMD C17 H17 SING N N 43 
A1AMD C20 H18 SING N N 44 
A1AMD C20 H19 SING N N 45 
A1AMD C21 H20 SING N N 46 
A1AMD C21 H21 SING N N 47 
A1AMD C9  H11 SING N N 48 
A1AMD N   H9  SING N N 49 
A1AMD C3  H   SING N N 50 
A1AMD C1  H5  SING N N 51 
A1AMD C2  H7  SING N N 52 
A1AMD C2  H6  SING N N 53 
A1AMD C2  H8  SING N N 54 
A1AMD C   H3  SING N N 55 
A1AMD C   H4  SING N N 56 
A1AMD C   H2  SING N N 57 
A1AMD C16 H16 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AMD SMILES           ACDLabs              12.01 "N#Cc1n(C)ncc1c1cc2c([NH]1)ncnc2NC(c1ccc2OCCOc2n1)C(C)C"                                                                                                                              
A1AMD InChI            InChI                1.06  "InChI=1S/C22H22N8O2/c1-12(2)19(15-4-5-18-22(28-15)32-7-6-31-18)29-21-13-8-16(27-20(13)24-11-25-21)14-10-26-30(3)17(14)9-23/h4-5,8,10-12,19H,6-7H2,1-3H3,(H2,24,25,27,29)/t19-/m0/s1" 
A1AMD InChIKey         InChI                1.06  TVKAXNHJIVHZSG-IBGZPJMESA-N                                                                                                                                                           
A1AMD SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4"                                                                                                                          
A1AMD SMILES           CACTVS               3.385 "CC(C)[CH](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4"                                                                                                                           
A1AMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C"                                                                                                                       
A1AMD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AMD "SYSTEMATIC NAME" ACDLabs              12.01 "(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile" 
A1AMD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[4-[[(1~{S})-1-(2,3-dihydro-[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methyl-propyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-6-yl]-2-methyl-pyrazole-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AMD "Create component" 2024-04-11 RCSB 
A1AMD "Initial release"  2024-05-15 RCSB 
# 
