data_A1AFD
# 
_chem_comp.id                                    A1AFD 
_chem_comp.name                                  "(5-bromopyridin-3-yl){4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 Br Cl N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-23 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        470.789 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AFD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8W1T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AFD C1   C1  C  0 1 N N S N N N -19.510 2.402  -2.392 2.862  -0.745 0.806  C1   A1AFD 1  
A1AFD C2   C2  C  0 1 Y N N N N N -18.893 1.625  -3.545 3.492  0.600  0.550  C2   A1AFD 2  
A1AFD C3   C3  C  0 1 Y N N N N N -19.604 0.613  -4.180 3.990  1.342  1.605  C3   A1AFD 3  
A1AFD C4   C4  C  0 1 Y N N N N N -19.042 -0.098 -5.221 4.568  2.575  1.370  C4   A1AFD 4  
A1AFD C5   C5  C  0 1 Y N N N N N -17.767 0.206  -5.628 4.647  3.068  0.080  C5   A1AFD 5  
A1AFD C6   C6  C  0 1 Y N N N N N -17.039 1.199  -5.022 4.148  2.325  -0.975 C6   A1AFD 6  
A1AFD C7   C7  C  0 1 Y N N N N N -17.606 1.910  -3.985 3.576  1.089  -0.740 C7   A1AFD 7  
A1AFD C8   C8  C  0 1 Y N N N N N -20.248 3.622  -2.919 3.866  -1.832 0.521  C8   A1AFD 8  
A1AFD C11  C9  C  0 1 Y N N N N N -21.603 5.862  -3.867 5.699  -3.834 -0.003 C11  A1AFD 9  
A1AFD C21  C10 C  0 1 N N N N N N -16.792 2.944  2.409  -2.261 -1.596 -0.765 C21  A1AFD 10 
A1AFD C10  C11 C  0 1 Y N N N N N -20.232 5.795  -3.962 5.132  -3.126 -1.046 C10  A1AFD 11 
A1AFD C12  C12 C  0 1 Y N N N N N -22.302 4.822  -3.304 5.353  -3.538 1.302  C12  A1AFD 12 
A1AFD C13  C13 C  0 1 Y N N N N N -21.629 3.707  -2.829 4.433  -2.540 1.564  C13  A1AFD 13 
A1AFD C16  C14 C  0 1 N N N N N N -19.029 3.594  -0.316 1.120  -2.258 0.072  C16  A1AFD 14 
A1AFD C17  C15 C  0 1 N N N N N N -17.906 4.097  0.563  0.025  -2.456 -0.982 C17  A1AFD 15 
A1AFD C19  C16 C  0 1 N N N N N N -16.728 1.991  0.105  -0.424 0.025  -0.862 C19  A1AFD 16 
A1AFD C20  C17 C  0 1 N N N N N N -17.904 1.590  -0.756 0.689  0.125  0.187  C20  A1AFD 17 
A1AFD C23  C18 C  0 1 Y N N N N N -15.973 1.794  2.927  -3.223 -0.473 -0.772 C23  A1AFD 18 
A1AFD C24  C19 C  0 1 Y N N N N N -14.647 1.599  2.564  -2.959 0.682  -1.508 C24  A1AFD 19 
A1AFD C26  C20 C  0 1 Y N N N N N -14.458 -0.280 3.866  -4.944 1.638  -0.834 C26  A1AFD 20 
A1AFD C27  C21 C  0 1 Y N N N N N -15.763 -0.164 4.281  -5.283 0.525  -0.083 C27  A1AFD 21 
A1AFD C28  C22 C  0 1 Y N N N N N -16.536 0.876  3.817  -4.416 -0.554 -0.044 C28  A1AFD 22 
A1AFD C9   C23 C  0 1 Y N N N N N -19.557 4.681  -3.489 4.215  -2.125 -0.784 C9   A1AFD 23 
A1AFD N15  N1  N  0 1 N N N N N N -18.486 2.771  -1.394 1.695  -0.914 -0.070 N15  A1AFD 24 
A1AFD N18  N2  N  0 1 N N N N N N -17.119 2.986  1.105  -0.939 -1.352 -0.866 N18  A1AFD 25 
A1AFD N25  N3  N  0 1 Y N N N N N -13.900 0.580  3.017  -3.815 1.683  -1.514 N25  A1AFD 26 
A1AFD O22  O1  O  0 1 N N N N N N -17.144 3.822  3.190  -2.662 -2.740 -0.669 O22  A1AFD 27 
A1AFD BR29 BR1 BR 0 0 N N N N N N -16.480 -1.429 5.487  -6.910 0.479  0.878  BR29 A1AFD 28 
A1AFD CL14 CL1 CL 0 0 N N N N N N -17.050 -0.691 -6.936 5.372  4.617  -0.215 CL14 A1AFD 29 
A1AFD H1   H1  H  0 1 N N N N N N -20.248 1.748  -1.904 2.547  -0.806 1.848  H1   A1AFD 30 
A1AFD H2   H2  H  0 1 N N N N N N -20.607 0.381  -3.855 3.928  0.957  2.612  H2   A1AFD 31 
A1AFD H3   H3  H  0 1 N N N N N N -19.599 -0.884 -5.709 4.957  3.155  2.195  H3   A1AFD 32 
A1AFD H4   H4  H  0 1 N N N N N N -16.035 1.421  -5.353 4.210  2.709  -1.983 H4   A1AFD 33 
A1AFD H5   H5  H  0 1 N N N N N N -17.042 2.699  -3.509 3.186  0.509  -1.564 H5   A1AFD 34 
A1AFD H6   H6  H  0 1 N N N N N N -22.129 6.731  -4.234 6.419  -4.613 -0.208 H6   A1AFD 35 
A1AFD H7   H7  H  0 1 N N N N N N -19.681 6.611  -4.406 5.402  -3.357 -2.066 H7   A1AFD 36 
A1AFD H8   H8  H  0 1 N N N N N N -23.378 4.873  -3.231 5.797  -4.091 2.117  H8   A1AFD 37 
A1AFD H9   H9  H  0 1 N N N N N N -22.186 2.896  -2.384 4.157  -2.314 2.583  H9   A1AFD 38 
A1AFD H10  H10 H  0 1 N N N N N N -19.567 4.451  -0.747 0.691  -2.367 1.068  H10  A1AFD 39 
A1AFD H11  H11 H  0 1 N N N N N N -19.723 2.992  0.288  1.902  -3.005 -0.071 H11  A1AFD 40 
A1AFD H12  H12 H  0 1 N N N N N N -17.247 4.746  -0.033 0.470  -2.451 -1.977 H12  A1AFD 41 
A1AFD H13  H13 H  0 1 N N N N N N -18.334 4.674  1.396  -0.482 -3.405 -0.809 H13  A1AFD 42 
A1AFD H14  H14 H  0 1 N N N N N N -16.339 1.100  0.619  -1.228 0.717  -0.610 H14  A1AFD 43 
A1AFD H15  H15 H  0 1 N N N N N N -15.942 2.417  -0.536 -0.026 0.270  -1.846 H15  A1AFD 44 
A1AFD H16  H16 H  0 1 N N N N N N -18.665 1.103  -0.128 1.158  1.108  0.128  H16  A1AFD 45 
A1AFD H17  H17 H  0 1 N N N N N N -17.564 0.888  -1.532 0.265  -0.016 1.181  H17  A1AFD 46 
A1AFD H18  H18 H  0 1 N N N N N N -14.194 2.303  1.882  -2.044 0.757  -2.077 H18  A1AFD 47 
A1AFD H19  H19 H  0 1 N N N N N N -13.863 -1.099 4.243  -5.618 2.481  -0.867 H19  A1AFD 48 
A1AFD H20  H20 H  0 1 N N N N N N -17.562 0.981  4.136  -4.655 -1.435 0.533  H20  A1AFD 49 
A1AFD H21  H21 H  0 1 N N N N N N -18.481 4.637  -3.565 3.772  -1.571 -1.599 H21  A1AFD 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AFD CL14 C5   SING N N 1  
A1AFD C5   C4   DOUB Y N 2  
A1AFD C5   C6   SING Y N 3  
A1AFD C4   C3   SING Y N 4  
A1AFD C6   C7   DOUB Y N 5  
A1AFD C3   C2   DOUB Y N 6  
A1AFD C7   C2   SING Y N 7  
A1AFD C10  C11  DOUB Y N 8  
A1AFD C10  C9   SING Y N 9  
A1AFD C11  C12  SING Y N 10 
A1AFD C2   C1   SING N N 11 
A1AFD C9   C8   DOUB Y N 12 
A1AFD C12  C13  DOUB Y N 13 
A1AFD C8   C13  SING Y N 14 
A1AFD C8   C1   SING N N 15 
A1AFD C1   N15  SING N N 16 
A1AFD N15  C20  SING N N 17 
A1AFD N15  C16  SING N N 18 
A1AFD C20  C19  SING N N 19 
A1AFD C16  C17  SING N N 20 
A1AFD C19  N18  SING N N 21 
A1AFD C17  N18  SING N N 22 
A1AFD N18  C21  SING N N 23 
A1AFD C21  C23  SING N N 24 
A1AFD C21  O22  DOUB N N 25 
A1AFD C24  C23  DOUB Y N 26 
A1AFD C24  N25  SING Y N 27 
A1AFD C23  C28  SING Y N 28 
A1AFD N25  C26  DOUB Y N 29 
A1AFD C28  C27  DOUB Y N 30 
A1AFD C26  C27  SING Y N 31 
A1AFD C27  BR29 SING N N 32 
A1AFD C1   H1   SING N N 33 
A1AFD C3   H2   SING N N 34 
A1AFD C4   H3   SING N N 35 
A1AFD C6   H4   SING N N 36 
A1AFD C7   H5   SING N N 37 
A1AFD C11  H6   SING N N 38 
A1AFD C10  H7   SING N N 39 
A1AFD C12  H8   SING N N 40 
A1AFD C13  H9   SING N N 41 
A1AFD C16  H10  SING N N 42 
A1AFD C16  H11  SING N N 43 
A1AFD C17  H12  SING N N 44 
A1AFD C17  H13  SING N N 45 
A1AFD C19  H14  SING N N 46 
A1AFD C19  H15  SING N N 47 
A1AFD C20  H16  SING N N 48 
A1AFD C20  H17  SING N N 49 
A1AFD C24  H18  SING N N 50 
A1AFD C26  H19  SING N N 51 
A1AFD C28  H20  SING N N 52 
A1AFD C9   H21  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AFD SMILES           ACDLabs              12.01 "Brc1cc(cnc1)C(=O)N1CCN(CC1)C(c1ccc(Cl)cc1)c1ccccc1"                                                                                                  
A1AFD InChI            InChI                1.06  "InChI=1S/C23H21BrClN3O/c24-20-14-19(15-26-16-20)23(29)28-12-10-27(11-13-28)22(17-4-2-1-3-5-17)18-6-8-21(25)9-7-18/h1-9,14-16,22H,10-13H2/t22-/m0/s1" 
A1AFD InChIKey         InChI                1.06  HUHIPWIDNVSBFL-QFIPXVFZSA-N                                                                                                                           
A1AFD SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(cc1)[C@@H](N2CCN(CC2)C(=O)c3cncc(Br)c3)c4ccccc4"                                                                                             
A1AFD SMILES           CACTVS               3.385 "Clc1ccc(cc1)[CH](N2CCN(CC2)C(=O)c3cncc(Br)c3)c4ccccc4"                                                                                               
A1AFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@@H](c2ccc(cc2)Cl)N3CCN(CC3)C(=O)c4cc(cnc4)Br"                                                                                           
A1AFD SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(c2ccc(cc2)Cl)N3CCN(CC3)C(=O)c4cc(cnc4)Br"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AFD "SYSTEMATIC NAME" ACDLabs              12.01 "(5-bromopyridin-3-yl){4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}methanone"        
A1AFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5-bromanylpyridin-3-yl)-[4-[(~{S})-(4-chlorophenyl)-phenyl-methyl]piperazin-1-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AFD "Create component" 2024-02-23 RCSB 
A1AFD "Initial release"  2024-11-20 RCSB 
# 
