data_8OD
# 
_chem_comp.id                                    8OD 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N5 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.201 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8OD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3NBF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8OD N1     N1     N 0 1 Y N N -53.360 -33.437 -44.760 -6.277 1.975  1.133  N1     8OD 1  
8OD C2     C2     C 0 1 Y N N -53.769 -33.411 -43.472 -5.831 1.000  1.901  C2     8OD 2  
8OD N3     N3     N 0 1 Y N N -53.042 -33.803 -42.436 -4.764 0.292  1.590  N3     8OD 3  
8OD C4     C4     C 0 1 Y N N -51.825 -34.248 -42.743 -4.089 0.539  0.473  C4     8OD 4  
8OD C5     C5     C 0 1 Y N N -51.327 -34.321 -44.017 -4.527 1.563  -0.370 C5     8OD 5  
8OD C6     C6     C 0 1 Y N N -52.142 -33.886 -45.064 -5.659 2.289  -0.004 C6     8OD 6  
8OD N6     N6     N 0 1 N N N -51.718 -33.914 -46.398 -6.133 3.315  -0.809 N6     8OD 7  
8OD N7     N7     N 0 1 N N N -49.980 -34.844 -43.997 -3.648 1.602  -1.449 N7     8OD 8  
8OD C8     C8     C 0 1 N N N -49.696 -35.087 -42.634 -2.719 0.643  -1.268 C8     8OD 9  
8OD O8     O8     O 0 1 N N N -48.647 -35.560 -42.153 -1.799 0.404  -2.027 O8     8OD 10 
8OD N9     N9     N 0 1 N N N -50.838 -34.723 -41.868 -2.964 -0.011 -0.116 N9     8OD 11 
8OD PA     PA     P 0 1 N N N -46.805 -36.071 -36.944 3.590  -0.621 -0.274 PA     8OD 12 
8OD PB     PB     P 0 1 N N N -48.484 -37.461 -35.011 5.430  1.601  0.405  PB     8OD 13 
8OD "C1'"  "C1'"  C 0 1 N N R -50.955 -34.813 -40.409 -2.172 -1.118 0.424  "C1'"  8OD 14 
8OD O1A    O1A    O 0 1 N N N -45.574 -35.835 -36.094 3.463  -0.139 -1.668 O1A    8OD 15 
8OD O1B    O1B    O 0 1 N N N -49.269 -38.469 -35.875 5.967  2.124  1.829  O1B    8OD 16 
8OD "C2'"  "C2'"  C 0 1 N N R -50.539 -36.194 -39.920 -2.259 -2.355 -0.505 "C2'"  8OD 17 
8OD "O2'"  "O2'"  O 0 1 N N N -51.667 -37.067 -39.994 -3.403 -3.151 -0.189 "O2'"  8OD 18 
8OD O2A    O2A    O 0 1 N N N -46.757 -37.274 -37.864 4.528  -1.929 -0.242 O2A    8OD 19 
8OD O2B    O2B    O 0 1 N N N -47.177 -38.094 -34.511 6.539  0.957  -0.335 O2B    8OD 20 
8OD "C3'"  "C3'"  C 0 1 N N S -50.129 -35.841 -38.495 -0.951 -3.110 -0.164 "C3'"  8OD 21 
8OD "O3'"  "O3'"  O 0 1 N N N -51.254 -35.719 -37.629 -1.206 -4.153 0.779  "O3'"  8OD 22 
8OD O3A    O3A    O 0 1 N N N -48.111 -36.179 -35.970 4.247  0.534  0.635  O3A    8OD 23 
8OD O3B    O3B    O 0 1 N N N -49.333 -36.746 -33.937 4.869  2.847  -0.447 O3B    8OD 24 
8OD "C4'"  "C4'"  C 0 1 N N R -49.409 -34.505 -38.688 -0.044 -2.031 0.459  "C4'"  8OD 25 
8OD "O4'"  "O4'"  O 0 1 N N N -50.021 -33.892 -39.847 -0.766 -0.789 0.416  "O4'"  8OD 26 
8OD "C5'"  "C5'"  C 0 1 N N N -47.903 -34.674 -38.970 1.250  -1.909 -0.349 "C5'"  8OD 27 
8OD "O5'"  "O5'"  O 0 1 N N N -47.150 -34.679 -37.762 2.132  -0.992 0.301  "O5'"  8OD 28 
8OD H2     H2     H 0 1 N N N -54.764 -33.043 -43.272 -6.358 0.775  2.816  H2     8OD 29 
8OD HN6    HN6    H 0 1 N N N -52.447 -33.565 -46.987 -6.922 3.813  -0.544 HN6    8OD 30 
8OD HN6A   HN6A   H 0 0 N N N -50.904 -33.343 -46.501 -5.675 3.534  -1.635 HN6A   8OD 31 
8OD HN7    HN7    H 0 1 N N N -49.378 -35.000 -44.780 -3.697 2.213  -2.201 HN7    8OD 32 
8OD "H1'"  "H1'"  H 0 1 N N N -51.996 -34.606 -40.120 -2.503 -1.370 1.432  "H1'"  8OD 33 
8OD HO1B   HO1B   H 0 0 N N N -48.786 -39.286 -35.927 6.682  2.772  1.767  HO1B   8OD 34 
8OD "H2'"  "H2'"  H 0 1 N N N -49.750 -36.718 -40.479 -2.273 -2.055 -1.553 "H2'"  8OD 35 
8OD "HO2'" "HO2'" H 0 0 N N N -51.419 -37.932 -39.691 -3.501 -3.937 -0.744 "HO2'" 8OD 36 
8OD HO2A   HO2A   H 0 0 N N N -45.923 -37.718 -37.763 4.655  -2.300 0.642  HO2A   8OD 37 
8OD "H3'"  "H3'"  H 0 1 N N N -49.507 -36.611 -38.015 -0.498 -3.516 -1.068 "H3'"  8OD 38 
8OD "HO3'" "HO3'" H 0 0 N N N -50.958 -35.499 -36.754 -1.819 -4.830 0.459  "HO3'" 8OD 39 
8OD HO3B   HO3B   H 0 0 N N N -48.898 -36.810 -33.095 4.139  3.318  -0.022 HO3B   8OD 40 
8OD "H4'"  "H4'"  H 0 1 N N N -49.498 -33.906 -37.770 0.185  -2.291 1.492  "H4'"  8OD 41 
8OD "H5'"  "H5'"  H 0 1 N N N -47.743 -35.628 -39.493 1.728  -2.886 -0.419 "H5'"  8OD 42 
8OD "H5'A" "H5'A" H 0 0 N N N -47.562 -33.838 -39.599 1.020  -1.544 -1.350 "H5'A" 8OD 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8OD N1    C2     DOUB Y N 1  
8OD N1    C6     SING Y N 2  
8OD C2    N3     SING Y N 3  
8OD N3    C4     DOUB Y N 4  
8OD C4    C5     SING Y N 5  
8OD C4    N9     SING N N 6  
8OD C5    C6     DOUB Y N 7  
8OD C5    N7     SING N N 8  
8OD C6    N6     SING N N 9  
8OD N7    C8     SING N N 10 
8OD C8    O8     DOUB N N 11 
8OD C8    N9     SING N N 12 
8OD N9    "C1'"  SING N N 13 
8OD PA    O1A    DOUB N N 14 
8OD PA    O2A    SING N N 15 
8OD PA    O3A    SING N N 16 
8OD PA    "O5'"  SING N N 17 
8OD PB    O1B    SING N N 18 
8OD PB    O2B    DOUB N N 19 
8OD PB    O3A    SING N N 20 
8OD PB    O3B    SING N N 21 
8OD "C1'" "C2'"  SING N N 22 
8OD "C1'" "O4'"  SING N N 23 
8OD "C2'" "O2'"  SING N N 24 
8OD "C2'" "C3'"  SING N N 25 
8OD "C3'" "O3'"  SING N N 26 
8OD "C3'" "C4'"  SING N N 27 
8OD "C4'" "O4'"  SING N N 28 
8OD "C4'" "C5'"  SING N N 29 
8OD "C5'" "O5'"  SING N N 30 
8OD C2    H2     SING N N 31 
8OD N6    HN6    SING N N 32 
8OD N6    HN6A   SING N N 33 
8OD N7    HN7    SING N N 34 
8OD "C1'" "H1'"  SING N N 35 
8OD O1B   HO1B   SING N N 36 
8OD "C2'" "H2'"  SING N N 37 
8OD "O2'" "HO2'" SING N N 38 
8OD O2A   HO2A   SING N N 39 
8OD "C3'" "H3'"  SING N N 40 
8OD "O3'" "HO3'" SING N N 41 
8OD O3B   HO3B   SING N N 42 
8OD "C4'" "H4'"  SING N N 43 
8OD "C5'" "H5'"  SING N N 44 
8OD "C5'" "H5'A" SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8OD SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCC3OC(N2C(=O)Nc1c(ncnc12)N)C(O)C3O"                                                                                                                                          
8OD SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2N([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)C(=O)Nc12"                                                                                                                    
8OD SMILES           CACTVS               3.370 "Nc1ncnc2N([CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O)C(=O)Nc12"                                                                                                                          
8OD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)N(C(=O)N2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N"                                                                                                               
8OD SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)N(C(=O)N2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N"                                                                                                                                    
8OD InChI            InChI                1.03  "InChI=1S/C10H15N5O11P2/c11-7-4-8(13-2-12-7)15(10(18)14-4)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,14,18)(H,22,23)(H2,11,12,13)(H2,19,20,21)/t3-,5-,6-,9-/m1/s1" 
8OD InChIKey         InChI                1.03  RKHXUJRVBUXHAN-UUOKFMHZSA-N                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8OD "SYSTEMATIC NAME" ACDLabs              12.01 
;8-oxoadenosine 5'-(trihydrogen diphosphate)
;
8OD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8OD "Create component"     2010-06-15 PDBJ 
8OD "Modify aromatic_flag" 2011-06-04 RCSB 
8OD "Modify descriptor"    2011-06-04 RCSB 
# 
