data_8ID
#

_chem_comp.id                                   8ID
_chem_comp.name                                 NICOTINAMIDE-8-IODO-ADENINE-DINUCLEOTIDE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 I N7 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-AMINO-8-IODO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2006-06-20
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       790.330
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8ID
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2HCY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8ID  O7N     O7N     O  0  1  N  N  N  85.158   -9.378  48.908  11.366   2.238   2.601  O7N     8ID   1  
8ID  C7N     C7N     C  0  1  N  N  N  84.636   -9.732  47.850  11.444   1.039   2.420  C7N     8ID   2  
8ID  N7N     N7N     N  0  1  N  N  N  83.755   -8.968  47.196  12.490   0.349   2.917  N7N     8ID   3  
8ID  C3N     C3N     C  0  1  Y  N  N  84.998  -11.076  47.281  10.392   0.337   1.654  C3N     8ID   4  
8ID  C4N     C4N     C  0  1  Y  N  N  85.785  -11.968  48.016  10.471  -1.044   1.437  C4N     8ID   5  
8ID  C5N     C5N     C  0  1  Y  N  N  86.118  -13.206  47.491   9.460  -1.653   0.714  C5N     8ID   6  
8ID  C6N     C6N     C  0  1  Y  N  N  85.683  -13.567  46.231   8.415  -0.885   0.232  C6N     8ID   7  
8ID  C2N     C2N     C  0  1  Y  N  N  84.588  -11.480  46.027   9.302   1.039   1.139  C2N     8ID   8  
8ID  N1N     N1N     N  1  1  Y  N  N  84.930  -12.692  45.538   8.368   0.415   0.451  N1N     8ID   9  
8ID  "C1'"   "C1'"   C  0  1  N  N  R  84.382  -12.975  44.184   7.241   1.186  -0.081  "C1'"   8ID  10  
8ID  "C2'"   "C2'"   C  0  1  N  N  R  85.361  -13.516  43.127   7.438   1.455  -1.589  "C2'"   8ID  11  
8ID  "O2'"   "O2'"   O  0  1  N  N  N  86.253  -12.547  42.630   7.965   2.765  -1.806  "O2'"   8ID  12  
8ID  "C3'"   "C3'"   C  0  1  N  N  S  84.342  -14.071  42.119   6.012   1.340  -2.178  "C3'"   8ID  13  
8ID  "O3'"   "O3'"   O  0  1  N  N  N  83.887  -13.004  41.310   5.615   2.577  -2.774  "O3'"   8ID  14  
8ID  "O4'"   "O4'"   O  0  1  N  N  N  83.407  -13.938  44.347   6.022   0.417   0.004  "O4'"   8ID  15  
8ID  "C4'"   "C4'"   C  0  1  N  N  R  83.227  -14.579  43.049   5.125   1.019  -0.955  "C4'"   8ID  16  
8ID  "C5'"   "C5'"   C  0  1  N  N  N  83.164  -16.071  43.238   4.018   0.036  -1.340  "C5'"   8ID  17  
8ID  "O5'"   "O5'"   O  0  1  N  N  N  84.376  -16.481  43.897   3.185  -0.212  -0.205  "O5'"   8ID  18  
8ID  PN      PN      P  0  1  N  N  R  84.477  -18.012  44.355   2.049  -1.249  -0.680  PN      8ID  19  
8ID  O1N     O1N     O  0  1  N  N  N  83.431  -18.413  45.319   2.732  -2.655  -1.064  O1N     8ID  20  
8ID  O2N     O2N     O  0  1  N  N  N  85.920  -18.149  44.659   1.346  -0.703  -1.863  O2N     8ID  21  
8ID  OPP     OPP     O  0  1  N  N  N  84.068  -18.716  42.951   0.994  -1.473   0.515  OPP     8ID  22  
8ID  PA      PA      P  0  1  N  N  S  83.853  -20.218  42.522  -0.300  -2.179  -0.133  PA      8ID  23  
8ID  O1A     O1A     O  0  1  N  N  N  84.568  -21.067  43.518  -0.020  -3.754  -0.312  O1A     8ID  24  
8ID  O2A     O2A     O  0  1  N  N  N  84.288  -20.357  41.083  -0.582  -1.574  -1.454  O2A     8ID  25  
8ID  O5B     O5*     O  0  1  N  N  N  82.281  -20.470  42.710  -1.569  -1.966   0.836  O5B     8ID  26  
8ID  C5B     C5*     C  0  1  N  N  N  81.329  -19.653  41.968  -2.703  -2.507   0.156  C5B     8ID  27  
8ID  C4B     C4*     C  0  1  N  N  R  80.015  -20.380  41.844  -3.949  -2.336   1.027  C4B     8ID  28  
8ID  O4B     O4*     O  0  1  N  N  N  79.103  -19.639  41.022  -4.265  -0.940   1.159  O4B     8ID  29  
8ID  C1B     C1*     C  0  1  N  N  R  78.179  -20.538  40.537  -5.704  -0.837   1.222  C1B     8ID  30  
8ID  C2B     C2*     C  0  1  N  N  R  79.078  -21.683  40.047  -6.186  -1.874   0.176  C2B     8ID  31  
8ID  O2B     O2*     O  0  1  N  N  N  78.392  -22.890  39.825  -7.508  -2.327   0.478  O2B     8ID  32  
8ID  C3B     C3*     C  0  1  N  N  S  80.066  -21.763  41.200  -5.156  -3.020   0.355  C3B     8ID  33  
8ID  O3B     O3*     O  0  1  N  N  N  79.622  -22.704  42.153  -5.689  -4.046   1.195  O3B     8ID  34  
8ID  N9A     N9A     N  0  1  Y  N  N  77.357  -19.904  39.519  -6.142   0.512   0.856  N9A     8ID  35  
8ID  C8A     C8A     C  0  1  Y  N  N  77.688  -19.389  38.284  -5.671   1.258  -0.184  C8A     8ID  36  
8ID  I8A     I8A     I  0  1  N  N  N  79.672  -19.329  37.447  -4.186   0.645  -1.529  I8A     8ID  37  
8ID  N7A     N7A     N  0  1  Y  N  N  76.722  -18.871  37.561  -6.281   2.408  -0.218  N7A     8ID  38  
8ID  C5A     C5A     C  0  1  Y  N  N  75.642  -19.058  38.389  -7.179   2.472   0.795  C5A     8ID  39  
8ID  C6A     C6A     C  0  1  Y  N  N  74.279  -18.710  38.201  -8.097   3.437   1.242  C6A     8ID  40  
8ID  N6A     N6A     N  0  1  N  N  N  73.802  -18.112  37.134  -8.219   4.653   0.592  N6A     8ID  41  
8ID  C4A     C4A     C  0  1  Y  N  N  76.007  -19.689  39.588  -7.105   1.254   1.492  C4A     8ID  42  
8ID  N3A     N3A     N  0  1  Y  N  N  75.153  -20.004  40.595  -7.890   1.065   2.547  N3A     8ID  43  
8ID  C2A     C2A     C  0  1  Y  N  N  73.893  -19.665  40.380  -8.736   1.998   2.930  C2A     8ID  44  
8ID  N1A     N1A     N  0  1  Y  N  N  73.448  -19.056  39.254  -8.845   3.156   2.304  N1A     8ID  45  
8ID  H7N1    1H7N    H  0  0  N  N  N  83.459   -8.067  47.512  13.180   0.809   3.419  H7N1    8ID  46  
8ID  H7N2    2H7N    H  0  0  N  N  N  83.425   -9.398  46.356  12.550  -0.609   2.775  H7N2    8ID  47  
8ID  H4N     H4N     H  0  1  N  N  N  86.135  -11.690  48.999  11.298  -1.619   1.825  H4N     8ID  48  
8ID  H5N     H5N     H  0  1  N  N  N  86.720  -13.891  48.069   9.488  -2.716   0.527  H5N     8ID  49  
8ID  H6N     H6N     H  0  1  N  N  N  85.941  -14.528  45.811   7.625  -1.357  -0.333  H6N     8ID  50  
8ID  H2N     H2N     H  0  1  N  N  N  83.984  -10.816  45.426   9.229   2.105   1.297  H2N     8ID  51  
8ID  "H1'"   "H1'"   H  0  1  N  N  N  84.045  -12.002  43.797   7.136   2.125   0.462  "H1'"   8ID  52  
8ID  "H2'"   "H2'"   H  0  1  N  N  N  86.090  -14.260  43.480   8.094   0.703  -2.027  "H2'"   8ID  53  
8ID  "HO2'"  "HO2'"  H  0  0  N  N  N  86.454  -11.920  43.315   8.007   2.895  -2.763  "HO2'"  8ID  54  
8ID  "H3'"   "H3'"   H  0  1  N  N  N  84.721  -14.847  41.438   5.963   0.532  -2.908  "H3'"   8ID  55  
8ID  "HO3'"  "HO3'"  H  0  0  N  N  N  83.785  -12.224  41.842   6.201   2.724  -3.529  "HO3'"  8ID  56  
8ID  "H4'"   "H4'"   H  0  1  N  N  N  82.275  -14.317  42.564   4.694   1.934  -0.548  "H4'"   8ID  57  
8ID  "H5'1"  "1H5'"  H  0  0  N  N  N  83.065  -16.577  42.267   3.419   0.461  -2.145  "H5'1"  8ID  58  
8ID  "H5'2"  "2H5'"  H  0  0  N  N  N  82.292  -16.337  43.853   4.464  -0.901  -1.674  "H5'2"  8ID  59  
8ID  HO1N    HO1N    H  0  0  N  N  N  83.813  -18.499  46.184   3.178  -2.976  -0.268  HO1N    8ID  60  
8ID  HO1A    HO1A    H  0  0  N  N  N  84.720  -21.929  43.149   0.158  -4.108   0.570  HO1A    8ID  61  
8ID  H5A1    1H5*    H  0  0  N  N  N  81.729  -19.454  40.963  -2.845  -1.982  -0.789  H5A1    8ID  62  
8ID  H5A2    2H5*    H  0  0  N  N  N  81.171  -18.704  42.501  -2.539  -3.567  -0.039  H5A2    8ID  63  
8ID  H4B     H4*     H  0  1  N  N  N  79.705  -20.487  42.894  -3.776  -2.772   2.011  H4B     8ID  64  
8ID  H1B     H1*     H  0  1  N  N  N  77.434  -20.908  41.257  -6.064  -1.100   2.217  H1B     8ID  65  
8ID  H2B     H2*     H  0  1  N  N  N  79.532  -21.505  39.061  -6.140  -1.461  -0.831  H2B     8ID  66  
8ID  HO2A    HO2*    H  0  0  N  N  N  78.237  -23.000  38.894  -7.748  -2.966  -0.206  HO2A    8ID  67  
8ID  H3B     H3*     H  0  1  N  N  N  81.070  -22.056  40.859  -4.871  -3.431  -0.613  H3B     8ID  68  
8ID  HO3A    HO3*    H  0  0  N  N  N  79.522  -23.553  41.738  -6.474  -4.393   0.749  HO3A    8ID  69  
8ID  H6A1    1H6A    H  0  0  N  N  N  74.442  -18.226  36.374  -7.667   4.846  -0.182  H6A1    8ID  70  
8ID  H6A2    2H6A    H  0  0  N  N  N  73.681  -17.138  37.324  -8.856   5.311   0.910  H6A2    8ID  71  
8ID  H2A     H2A     H  0  1  N  N  N  73.171  -19.888  41.152  -9.363   1.811   3.789  H2A     8ID  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8ID  O7N    C7N     DOUB  N  N   1  
8ID  C7N    N7N     SING  N  N   2  
8ID  C7N    C3N     SING  N  N   3  
8ID  N7N    H7N1    SING  N  N   4  
8ID  N7N    H7N2    SING  N  N   5  
8ID  C3N    C4N     DOUB  Y  N   6  
8ID  C3N    C2N     SING  Y  N   7  
8ID  C4N    C5N     SING  Y  N   8  
8ID  C4N    H4N     SING  N  N   9  
8ID  C5N    C6N     DOUB  Y  N  10  
8ID  C5N    H5N     SING  N  N  11  
8ID  C6N    N1N     SING  Y  N  12  
8ID  C6N    H6N     SING  N  N  13  
8ID  C2N    N1N     DOUB  Y  N  14  
8ID  C2N    H2N     SING  N  N  15  
8ID  N1N    "C1'"   SING  N  N  16  
8ID  "C1'"  "C2'"   SING  N  N  17  
8ID  "C1'"  "O4'"   SING  N  N  18  
8ID  "C1'"  "H1'"   SING  N  N  19  
8ID  "C2'"  "O2'"   SING  N  N  20  
8ID  "C2'"  "C3'"   SING  N  N  21  
8ID  "C2'"  "H2'"   SING  N  N  22  
8ID  "O2'"  "HO2'"  SING  N  N  23  
8ID  "C3'"  "O3'"   SING  N  N  24  
8ID  "C3'"  "C4'"   SING  N  N  25  
8ID  "C3'"  "H3'"   SING  N  N  26  
8ID  "O3'"  "HO3'"  SING  N  N  27  
8ID  "O4'"  "C4'"   SING  N  N  28  
8ID  "C4'"  "C5'"   SING  N  N  29  
8ID  "C4'"  "H4'"   SING  N  N  30  
8ID  "C5'"  "O5'"   SING  N  N  31  
8ID  "C5'"  "H5'1"  SING  N  N  32  
8ID  "C5'"  "H5'2"  SING  N  N  33  
8ID  "O5'"  PN      SING  N  N  34  
8ID  PN     O1N     SING  N  N  35  
8ID  PN     O2N     DOUB  N  N  36  
8ID  PN     OPP     SING  N  N  37  
8ID  O1N    HO1N    SING  N  N  38  
8ID  OPP    PA      SING  N  N  39  
8ID  PA     O1A     SING  N  N  40  
8ID  PA     O2A     DOUB  N  N  41  
8ID  PA     O5B     SING  N  N  42  
8ID  O1A    HO1A    SING  N  N  43  
8ID  O5B    C5B     SING  N  N  44  
8ID  C5B    C4B     SING  N  N  45  
8ID  C5B    H5A1    SING  N  N  46  
8ID  C5B    H5A2    SING  N  N  47  
8ID  C4B    O4B     SING  N  N  48  
8ID  C4B    C3B     SING  N  N  49  
8ID  C4B    H4B     SING  N  N  50  
8ID  O4B    C1B     SING  N  N  51  
8ID  C1B    C2B     SING  N  N  52  
8ID  C1B    N9A     SING  N  N  53  
8ID  C1B    H1B     SING  N  N  54  
8ID  C2B    O2B     SING  N  N  55  
8ID  C2B    C3B     SING  N  N  56  
8ID  C2B    H2B     SING  N  N  57  
8ID  O2B    HO2A    SING  N  N  58  
8ID  C3B    O3B     SING  N  N  59  
8ID  C3B    H3B     SING  N  N  60  
8ID  O3B    HO3A    SING  N  N  61  
8ID  N9A    C8A     SING  Y  N  62  
8ID  N9A    C4A     SING  Y  N  63  
8ID  C8A    I8A     SING  N  N  64  
8ID  C8A    N7A     DOUB  Y  N  65  
8ID  N7A    C5A     SING  Y  N  66  
8ID  C5A    C6A     DOUB  Y  N  67  
8ID  C5A    C4A     SING  Y  N  68  
8ID  C6A    N6A     SING  N  N  69  
8ID  C6A    N1A     SING  Y  N  70  
8ID  N6A    H6A1    SING  N  N  71  
8ID  N6A    H6A2    SING  N  N  72  
8ID  C4A    N3A     DOUB  Y  N  73  
8ID  N3A    C2A     SING  Y  N  74  
8ID  C2A    N1A     DOUB  Y  N  75  
8ID  C2A    H2A     SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8ID  SMILES_CANONICAL  CACTVS                3.341  "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4c(I)nc5c(N)ncnc45)[C@@H](O)[C@H]2O"  
8ID  SMILES            CACTVS                3.341  "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4c(I)nc5c(N)ncnc45)[CH](O)[CH]2O"  
8ID  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4c5c(c(ncn5)N)nc4I)O)O)O)O)C(=O)N"  
8ID  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4c5c(c(ncn5)N)nc4I)O)O)O)O)C(=O)N"  
8ID  InChI             InChI                 1.03   "InChI=1S/C21H26IN7O14P2/c22-21-27-11-16(23)25-7-26-18(11)29(21)20-15(33)13(31)10(42-20)6-40-45(37,38)43-44(35,36)39-5-9-12(30)14(32)19(41-9)28-3-1-2-8(4-28)17(24)34/h1-4,7,9-10,12-15,19-20,30-33H,5-6H2,(H5-,23,24,25,26,34,35,36,37,38)/p+1/t9-,10-,12-,13-,14-,15-,19-,20-/m1/s1"  
8ID  InChIKey          InChI                 1.03   UVGUXLRSEVQZMG-NAJQWHGHSA-O  
#
_pdbx_chem_comp_identifier.comp_id          8ID
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-amino-8-iodo-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8ID  "Create component"   2006-06-20  RCSB  
8ID  "Modify descriptor"  2011-06-04  RCSB  
8ID  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8ID
_pdbx_chem_comp_synonyms.name        "3-(AMINOCARBONYL)-1-[(2R,3R,4S,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-AMINO-8-IODO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]PYRIDINIUM"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
