data_7KD
# 
_chem_comp.id                                    7KD 
_chem_comp.name                                  "~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H21 F3 N8 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-04 
_chem_comp.pdbx_modified_date                    2017-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.493 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7KD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MAH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7KD C1  C1  C 0 1 Y N N -16.205 7.682  -5.579  -0.041 2.129  0.427  C1  7KD 1  
7KD C2  C2  C 0 1 Y N N -15.511 8.836  -5.148  -0.570 1.025  -0.246 C2  7KD 2  
7KD C8  C3  C 0 1 N N N -16.759 7.493  -6.912  -0.934 3.258  0.874  C8  7KD 3  
7KD C13 C4  C 0 1 Y N N -13.893 9.008  -1.257  3.750  -0.817 -0.607 C13 7KD 4  
7KD C14 C5  C 0 1 Y N N -13.781 9.041  0.137   4.372  0.419  -0.754 C14 7KD 5  
7KD C15 C6  C 0 1 Y N N -13.105 10.056 0.798   5.735  0.529  -0.595 C15 7KD 6  
7KD C16 C7  C 0 1 Y N N -12.517 11.110 0.100   6.494  -0.604 -0.285 C16 7KD 7  
7KD C19 C8  C 0 1 N N N -11.829 12.158 0.762   7.955  -0.490 -0.112 C19 7KD 8  
7KD C22 C9  C 0 1 N N N -13.810 12.609 2.289   10.135 -1.469 0.358  C22 7KD 9  
7KD C24 C10 C 0 1 Y N N -13.596 11.381 -6.367  -3.957 -0.047 -1.396 C24 7KD 10 
7KD N26 N1  N 0 1 Y N N -12.216 12.266 -8.113  -6.131 -0.277 -0.526 N26 7KD 11 
7KD C27 C11 C 0 1 Y N N -11.081 11.639 -7.552  -6.610 0.227  -1.651 C27 7KD 12 
7KD N29 N2  N 0 1 Y N N -12.533 10.765 -5.839  -4.442 0.465  -2.511 N29 7KD 13 
7KD C32 C12 C 0 1 N N N -14.315 14.164 -8.462  -4.061 -0.083 1.954  C32 7KD 14 
7KD C33 C13 C 0 1 N N N -13.810 11.645 -10.698 -5.546 -3.304 1.526  C33 7KD 15 
7KD N20 N3  N 0 1 N N N -12.435 12.859 1.769   8.685  -1.582 0.187  N20 7KD 16 
7KD O21 O1  O 0 1 N N N -10.707 12.490 0.382   8.500  0.590  -0.241 O21 7KD 17 
7KD C17 C14 C 0 1 Y N N -12.601 11.088 -1.295  5.865  -1.844 -0.137 C17 7KD 18 
7KD C18 C15 C 0 1 Y N N -13.269 10.055 -1.977  4.502  -1.946 -0.298 C18 7KD 19 
7KD N12 N4  N 0 1 N N N -14.604 7.950  -1.758  2.370  -0.923 -0.764 N12 7KD 20 
7KD C4  C16 C 0 1 Y N N -15.123 7.920  -2.993  1.545  0.114  -0.360 C4  7KD 21 
7KD N3  N5  N 0 1 Y N N -15.011 8.902  -3.898  0.248  0.046  -0.620 N3  7KD 22 
7KD N5  N6  N 0 1 Y N N -15.773 6.797  -3.352  2.073  1.149  0.276  N5  7KD 23 
7KD C6  C17 C 0 1 Y N N -16.304 6.670  -4.634  1.317  2.160  0.678  C6  7KD 24 
7KD F10 F1  F 0 1 N N N -17.323 6.264  -7.039  -0.165 4.233  1.519  F10 7KD 25 
7KD F11 F2  F 0 1 N N N -17.627 8.396  -7.218  -1.564 3.823  -0.239 F11 7KD 26 
7KD F9  F3  F 0 1 N N N -15.762 7.617  -7.875  -1.900 2.766  1.758  F9  7KD 27 
7KD N7  N7  N 0 1 N N N -15.365 9.859  -6.006  -1.926 0.951  -0.519 N7  7KD 28 
7KD C23 C18 C 0 1 N N N -14.806 11.180 -5.670  -2.468 -0.212 -1.226 C23 7KD 29 
7KD C28 C19 C 0 1 Y N N -11.251 10.879 -6.414  -5.747 0.610  -2.661 C28 7KD 30 
7KD C25 C20 C 0 1 Y N N -13.434 12.153 -7.535  -4.822 -0.429 -0.373 C25 7KD 31 
7KD N30 N8  N 0 1 N N N -14.513 12.750 -8.093  -4.315 -0.959 0.808  N30 7KD 32 
7KD S31 S1  S 0 1 N N N -15.049 11.782 -9.423  -3.998 -2.580 0.919  S31 7KD 33 
7KD O34 O2  O 0 1 N N N -15.372 10.405 -8.853  -2.983 -2.672 1.909  O34 7KD 34 
7KD O35 O3  O 0 1 N N N -16.278 12.353 -10.101 -3.751 -2.982 -0.422 O35 7KD 35 
7KD H1  H1  H 0 1 N N N -14.235 8.251  0.717   3.785  1.293  -0.994 H1  7KD 36 
7KD H2  H2  H 0 1 N N N -13.033 10.029 1.875   6.217  1.488  -0.710 H2  7KD 37 
7KD H3  H3  H 0 1 N N N -14.033 13.322 3.096   10.582 -1.099 -0.565 H3  7KD 38 
7KD H4  H4  H 0 1 N N N -14.539 12.737 1.475   10.353 -0.776 1.171  H4  7KD 39 
7KD H5  H5  H 0 1 N N N -13.873 11.583 2.679   10.551 -2.449 0.595  H5  7KD 40 
7KD H6  H6  H 0 1 N N N -10.106 11.752 -8.003  -7.675 0.351  -1.776 H6  7KD 41 
7KD H7  H7  H 0 1 N N N -13.976 14.729 -7.581  -4.922 -0.100 2.622  H7  7KD 42 
7KD H8  H8  H 0 1 N N N -13.557 14.233 -9.256  -3.178 -0.432 2.489  H8  7KD 43 
7KD H9  H9  H 0 1 N N N -15.265 14.585 -8.824  -3.894 0.936  1.603  H9  7KD 44 
7KD H10 H10 H 0 1 N N N -12.885 11.233 -10.268 -5.795 -2.871 2.494  H10 7KD 45 
7KD H11 H11 H 0 1 N N N -14.174 10.977 -11.493 -6.348 -3.094 0.817  H11 7KD 46 
7KD H12 H12 H 0 1 N N N -13.607 12.640 -11.120 -5.427 -4.383 1.630  H12 7KD 47 
7KD H13 H13 H 0 1 N N N -11.913 13.600 2.191   8.250  -2.443 0.289  H13 7KD 48 
7KD H14 H14 H 0 1 N N N -12.142 11.884 -1.863  6.449  -2.720 0.103  H14 7KD 49 
7KD H15 H15 H 0 1 N N N -13.306 10.061 -3.056  4.016  -2.904 -0.184 H15 7KD 50 
7KD H16 H16 H 0 1 N N N -14.744 7.154  -1.168  1.987  -1.724 -1.156 H16 7KD 51 
7KD H17 H17 H 0 1 N N N -16.809 5.754  -4.901  1.757  2.999  1.196  H17 7KD 52 
7KD H18 H18 H 0 1 N N N -16.282 10.042 -6.359  -2.516 1.669  -0.243 H18 7KD 53 
7KD H19 H19 H 0 1 N N N -14.616 11.231 -4.588  -2.266 -1.114 -0.649 H19 7KD 54 
7KD H20 H20 H 0 1 N N N -15.525 11.963 -5.954  -1.997 -0.294 -2.205 H20 7KD 55 
7KD H21 H21 H 0 1 N N N -10.408 10.374 -5.966  -6.141 1.029  -3.575 H21 7KD 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7KD C33 S31 SING N N 1  
7KD O35 S31 DOUB N N 2  
7KD S31 O34 DOUB N N 3  
7KD S31 N30 SING N N 4  
7KD C32 N30 SING N N 5  
7KD N26 C27 DOUB Y N 6  
7KD N26 C25 SING Y N 7  
7KD N30 C25 SING N N 8  
7KD F9  C8  SING N N 9  
7KD C27 C28 SING Y N 10 
7KD C25 C24 DOUB Y N 11 
7KD F11 C8  SING N N 12 
7KD F10 C8  SING N N 13 
7KD C8  C1  SING N N 14 
7KD C28 N29 DOUB Y N 15 
7KD C24 N29 SING Y N 16 
7KD C24 C23 SING N N 17 
7KD N7  C23 SING N N 18 
7KD N7  C2  SING N N 19 
7KD C1  C2  DOUB Y N 20 
7KD C1  C6  SING Y N 21 
7KD C2  N3  SING Y N 22 
7KD C6  N5  DOUB Y N 23 
7KD N3  C4  DOUB Y N 24 
7KD N5  C4  SING Y N 25 
7KD C4  N12 SING N N 26 
7KD C18 C17 DOUB Y N 27 
7KD C18 C13 SING Y N 28 
7KD N12 C13 SING N N 29 
7KD C17 C16 SING Y N 30 
7KD C13 C14 DOUB Y N 31 
7KD C16 C19 SING N N 32 
7KD C16 C15 DOUB Y N 33 
7KD C14 C15 SING Y N 34 
7KD O21 C19 DOUB N N 35 
7KD C19 N20 SING N N 36 
7KD N20 C22 SING N N 37 
7KD C14 H1  SING N N 38 
7KD C15 H2  SING N N 39 
7KD C22 H3  SING N N 40 
7KD C22 H4  SING N N 41 
7KD C22 H5  SING N N 42 
7KD C27 H6  SING N N 43 
7KD C32 H7  SING N N 44 
7KD C32 H8  SING N N 45 
7KD C32 H9  SING N N 46 
7KD C33 H10 SING N N 47 
7KD C33 H11 SING N N 48 
7KD C33 H12 SING N N 49 
7KD N20 H13 SING N N 50 
7KD C17 H14 SING N N 51 
7KD C18 H15 SING N N 52 
7KD N12 H16 SING N N 53 
7KD C6  H17 SING N N 54 
7KD N7  H18 SING N N 55 
7KD C23 H19 SING N N 56 
7KD C23 H20 SING N N 57 
7KD C28 H21 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7KD InChI            InChI                1.03  "InChI=1S/C20H21F3N8O3S/c1-24-18(32)12-4-6-13(7-5-12)29-19-28-10-14(20(21,22)23)16(30-19)27-11-15-17(26-9-8-25-15)31(2)35(3,33)34/h4-10H,11H2,1-3H3,(H,24,32)(H2,27,28,29,30)" 
7KD InChIKey         InChI                1.03  FWLMVFUGMHIOAA-UHFFFAOYSA-N                                                                                                                                                    
7KD SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1ccc(Nc2ncc(c(NCc3nccnc3N(C)[S](C)(=O)=O)n2)C(F)(F)F)cc1"                                                                                                             
7KD SMILES           CACTVS               3.385 "CNC(=O)c1ccc(Nc2ncc(c(NCc3nccnc3N(C)[S](C)(=O)=O)n2)C(F)(F)F)cc1"                                                                                                             
7KD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CNC(=O)c1ccc(cc1)Nc2ncc(c(n2)NCc3c(nccn3)N(C)S(=O)(=O)C)C(F)(F)F"                                                                                                             
7KD SMILES           "OpenEye OEToolkits" 2.0.6 "CNC(=O)c1ccc(cc1)Nc2ncc(c(n2)NCc3c(nccn3)N(C)S(=O)(=O)C)C(F)(F)F"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7KD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-methyl-4-[[4-[[3-[methyl(methylsulfonyl)amino]pyrazin-2-yl]methylamino]-5-(trifluoromethyl)pyrimidin-2-yl]amino]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7KD "Create component" 2016-11-04 RCSB 
7KD "Initial release"  2017-12-06 RCSB 
# 
