data_6MD
# 
_chem_comp.id                                    6MD 
_chem_comp.name                                  N-methyladenosine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-17 
_chem_comp.pdbx_modified_date                    2013-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        281.268 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6MD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4LMP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6MD "O5'" "O5'" O 0 1 N N N 43.247 44.347 118.264 -4.664 -2.363 0.653  "O5'" 6MD 1  
6MD "C5'" "C5'" C 0 1 N N N 43.650 43.328 117.383 -4.415 -1.310 -0.280 "C5'" 6MD 2  
6MD "C4'" "C4'" C 0 1 N N R 45.156 43.352 117.183 -3.492 -0.270 0.359  "C4'" 6MD 3  
6MD "O4'" "O4'" O 0 1 N N N 45.757 44.628 117.259 -2.194 -0.843 0.589  "O4'" 6MD 4  
6MD "C3'" "C3'" C 0 1 N N S 45.884 42.493 118.171 -3.304 0.923  -0.599 "C3'" 6MD 5  
6MD "O3'" "O3'" O 0 1 N N N 46.256 41.338 117.484 -3.765 2.131  0.010  "O3'" 6MD 6  
6MD "C2'" "C2'" C 0 1 N N R 47.075 43.335 118.600 -1.774 0.983  -0.832 "C2'" 6MD 7  
6MD "O2'" "O2'" O 0 1 N N N 48.227 42.562 118.774 -1.312 2.335  -0.832 "O2'" 6MD 8  
6MD "C1'" "C1'" C 0 1 N N R 47.133 44.376 117.498 -1.227 0.211  0.396  "C1'" 6MD 9  
6MD N9    N9    N 0 1 Y N N 47.919 45.603 117.748 0.095  -0.348 0.106  N9    6MD 10 
6MD C8    C8    C 0 1 Y N N 48.009 46.382 118.835 0.353  -1.581 -0.414 C8    6MD 11 
6MD N7    N7    N 0 1 Y N N 48.855 47.414 118.613 1.637  -1.750 -0.542 N7    6MD 12 
6MD C5    C5    C 0 1 Y N N 49.312 47.302 117.377 2.283  -0.640 -0.113 C5    6MD 13 
6MD C6    C6    C 0 1 Y N N 50.230 48.010 116.496 3.631  -0.256 -0.015 C6    6MD 14 
6MD N6    N6    N 0 1 N N N 50.878 49.105 116.874 4.642  -1.113 -0.414 N6    6MD 15 
6MD N1    N1    N 0 1 Y N N 50.412 47.531 115.274 3.914  0.949  0.469  N1    6MD 16 
6MD C2    C2    C 0 1 Y N N 49.807 46.441 114.836 2.956  1.773  0.853  C2    6MD 17 
6MD N3    N3    N 0 1 Y N N 48.964 45.745 115.582 1.680  1.457  0.779  N3    6MD 18 
6MD C4    C4    C 0 1 Y N N 48.701 46.111 116.828 1.301  0.276  0.303  C4    6MD 19 
6MD CZ    CZ    C 0 1 N N N 51.882 49.417 116.066 6.042  -0.696 -0.305 CZ    6MD 20 
6MD H1    H1    H 0 1 N N N 42.304 44.315 118.376 -5.243 -3.059 0.314  H1    6MD 21 
6MD H2    H2    H 0 1 N N N 43.155 43.474 116.412 -3.939 -1.719 -1.171 H2    6MD 22 
6MD H3    H3    H 0 1 N N N 43.357 42.353 117.801 -5.358 -0.838 -0.556 H3    6MD 23 
6MD H4    H4    H 0 1 N N N 45.353 42.937 116.184 -3.918 0.073  1.302  H4    6MD 24 
6MD H5    H5    H 0 1 N N N 45.243 42.272 119.037 -3.826 0.744  -1.538 H5    6MD 25 
6MD H6    H6    H 0 1 N N N 46.724 40.757 118.071 -4.706 2.125  0.232  H6    6MD 26 
6MD H7    H7    H 0 1 N N N 46.818 43.842 119.542 -1.503 0.481  -1.761 H7    6MD 27 
6MD H8    H8    H 0 1 N N N 48.090 41.944 119.483 -1.697 2.883  -1.530 H8    6MD 28 
6MD H9    H9    H 0 1 N N N 47.556 43.885 116.609 -1.186 0.859  1.271  H9    6MD 29 
6MD H10   H10   H 0 1 N N N 47.479 46.210 119.760 -0.397 -2.311 -0.681 H10   6MD 30 
6MD H11   H11   H 0 1 N N N 51.243 48.958 117.794 4.423  -1.990 -0.766 H11   6MD 31 
6MD H12   H12   H 0 1 N N N 50.008 46.105 113.830 3.230  2.743  1.241  H12   6MD 32 
6MD H13   H13   H 0 1 N N N 52.377 50.329 116.431 6.202  0.199  -0.907 H13   6MD 33 
6MD H14   H14   H 0 1 N N N 52.607 48.590 116.046 6.277  -0.480 0.737  H14   6MD 34 
6MD H15   H15   H 0 1 N N N 51.495 49.591 115.051 6.689  -1.497 -0.665 H15   6MD 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6MD C2    N1    DOUB Y N 1  
6MD C2    N3    SING Y N 2  
6MD N1    C6    SING Y N 3  
6MD N3    C4    DOUB Y N 4  
6MD CZ    N6    SING N N 5  
6MD C6    N6    SING N N 6  
6MD C6    C5    DOUB Y N 7  
6MD C4    C5    SING Y N 8  
6MD C4    N9    SING Y N 9  
6MD "C4'" "O4'" SING N N 10 
6MD "C4'" "C5'" SING N N 11 
6MD "C4'" "C3'" SING N N 12 
6MD "O4'" "C1'" SING N N 13 
6MD C5    N7    SING Y N 14 
6MD "C5'" "O5'" SING N N 15 
6MD "O3'" "C3'" SING N N 16 
6MD "C1'" N9    SING N N 17 
6MD "C1'" "C2'" SING N N 18 
6MD N9    C8    SING Y N 19 
6MD "C3'" "C2'" SING N N 20 
6MD "C2'" "O2'" SING N N 21 
6MD N7    C8    DOUB Y N 22 
6MD "O5'" H1    SING N N 23 
6MD "C5'" H2    SING N N 24 
6MD "C5'" H3    SING N N 25 
6MD "C4'" H4    SING N N 26 
6MD "C3'" H5    SING N N 27 
6MD "O3'" H6    SING N N 28 
6MD "C2'" H7    SING N N 29 
6MD "O2'" H8    SING N N 30 
6MD "C1'" H9    SING N N 31 
6MD C8    H10   SING N N 32 
6MD N6    H11   SING N N 33 
6MD C2    H12   SING N N 34 
6MD CZ    H13   SING N N 35 
6MD CZ    H14   SING N N 36 
6MD CZ    H15   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6MD SMILES           ACDLabs              12.01 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)NC"                                                                                                         
6MD InChI            InChI                1.03  "InChI=1S/C11H15N5O4/c1-12-9-6-10(14-3-13-9)16(4-15-6)11-8(19)7(18)5(2-17)20-11/h3-5,7-8,11,17-19H,2H2,1H3,(H,12,13,14)/t5-,7-,8-,11-/m1/s1" 
6MD InChIKey         InChI                1.03  VQAYFKKCNSOZKM-IOSLPCCCSA-N                                                                                                                  
6MD SMILES_CANONICAL CACTVS               3.385 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O"                                                                                         
6MD SMILES           CACTVS               3.385 "CNc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O"                                                                                               
6MD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O"                                                                                     
6MD SMILES           "OpenEye OEToolkits" 1.7.6 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)O)O"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6MD "SYSTEMATIC NAME" ACDLabs              12.01 N-methyladenosine                                                               
6MD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(methylamino)purin-9-yl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6MD "Create component" 2013-07-17 RCSB 
6MD "Initial release"  2013-11-06 RCSB 
# 
