data_6HD
# 
_chem_comp.id                                    6HD 
_chem_comp.name                                  "2-(methylamino)-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H10 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-11 
_chem_comp.pdbx_modified_date                    2017-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        190.202 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6HD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J9M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6HD O   O1  O 0 1 N N N 19.102 17.705 23.516 3.681  -1.516 0.004  O   6HD 1  
6HD C6  C1  C 0 1 N N N 17.970 17.403 23.112 3.375  -0.340 0.002  C6  6HD 2  
6HD N2  N1  N 0 1 N N N 16.950 17.168 23.938 4.335  0.607  -0.006 N2  6HD 3  
6HD C5  C2  C 0 1 Y N N 17.713 17.329 21.636 1.952  0.053  0.002  C5  6HD 4  
6HD C4  C3  C 0 1 Y N N 16.474 16.930 21.124 1.601  1.409  -0.000 C4  6HD 5  
6HD C3  C4  C 0 1 Y N N 16.220 16.956 19.762 0.288  1.783  0.000  C3  6HD 6  
6HD C7  C5  C 0 1 Y N N 18.728 17.732 20.772 0.961  -0.926 -0.001 C7  6HD 7  
6HD C8  C6  C 0 1 Y N N 18.466 17.761 19.410 -0.379 -0.547 -0.000 C8  6HD 8  
6HD C2  C7  C 0 1 Y N N 17.224 17.387 18.898 -0.713 0.820  0.003  C2  6HD 9  
6HD N1  N2  N 0 1 Y N N 17.211 17.568 17.512 -2.094 0.877  0.003  N1  6HD 10 
6HD N3  N3  N 0 1 Y N N 19.212 18.162 18.317 -1.547 -1.244 -0.003 N3  6HD 11 
6HD C1  C8  C 0 1 Y N N 18.417 18.029 17.233 -2.555 -0.408 -0.001 C1  6HD 12 
6HD N   N4  N 0 1 N N N 18.835 18.355 16.011 -3.885 -0.773 -0.002 N   6HD 13 
6HD C   C9  C 0 1 N N N 18.017 18.231 14.819 -4.927 0.257  0.000  C   6HD 14 
6HD H1  H1  H 0 1 N N N 17.082 17.233 24.927 5.270  0.349  -0.010 H1  6HD 15 
6HD H2  H2  H 0 1 N N N 16.053 16.927 23.568 4.090  1.545  -0.008 H2  6HD 16 
6HD H3  H3  H 0 1 N N N 15.702 16.596 21.802 2.374  2.163  -0.002 H3  6HD 17 
6HD H4  H4  H 0 1 N N N 15.259 16.647 19.377 0.026  2.831  -0.002 H4  6HD 18 
6HD H5  H5  H 0 1 N N N 19.698 18.016 21.154 1.231  -1.972 -0.004 H5  6HD 19 
6HD H6  H6  H 0 1 N N N 16.460 17.389 16.877 -2.636 1.682  0.005  H6  6HD 20 
6HD H8  H8  H 0 1 N N N 19.647 17.796 15.843 -4.131 -1.711 -0.005 H8  6HD 21 
6HD H9  H9  H 0 1 N N N 18.592 18.564 13.943 -4.824 0.876  0.892  H9  6HD 22 
6HD H10 H10 H 0 1 N N N 17.721 17.180 14.685 -4.824 0.881  -0.888 H10 6HD 23 
6HD H11 H11 H 0 1 N N N 17.117 18.855 14.925 -5.908 -0.218 -0.002 H11 6HD 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6HD C  N   SING N N 1  
6HD N  C1  SING N N 2  
6HD C1 N1  SING Y N 3  
6HD C1 N3  DOUB Y N 4  
6HD N1 C2  SING Y N 5  
6HD N3 C8  SING Y N 6  
6HD C2 C8  DOUB Y N 7  
6HD C2 C3  SING Y N 8  
6HD C8 C7  SING Y N 9  
6HD C3 C4  DOUB Y N 10 
6HD C7 C5  DOUB Y N 11 
6HD C4 C5  SING Y N 12 
6HD C5 C6  SING N N 13 
6HD C6 O   DOUB N N 14 
6HD C6 N2  SING N N 15 
6HD N2 H1  SING N N 16 
6HD N2 H2  SING N N 17 
6HD C4 H3  SING N N 18 
6HD C3 H4  SING N N 19 
6HD C7 H5  SING N N 20 
6HD N1 H6  SING N N 21 
6HD N  H8  SING N N 22 
6HD C  H9  SING N N 23 
6HD C  H10 SING N N 24 
6HD C  H11 SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6HD SMILES           ACDLabs              12.01 "O=C(N)c1ccc2c(c1)nc(n2)NC"                                                                 
6HD InChI            InChI                1.03  "InChI=1S/C9H10N4O/c1-11-9-12-6-3-2-5(8(10)14)4-7(6)13-9/h2-4H,1H3,(H2,10,14)(H2,11,12,13)" 
6HD InChIKey         InChI                1.03  LOKXPWIZESGCLZ-UHFFFAOYSA-N                                                                 
6HD SMILES_CANONICAL CACTVS               3.385 "CNc1[nH]c2ccc(cc2n1)C(N)=O"                                                                
6HD SMILES           CACTVS               3.385 "CNc1[nH]c2ccc(cc2n1)C(N)=O"                                                                
6HD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CNc1[nH]c2ccc(cc2n1)C(=O)N"                                                                
6HD SMILES           "OpenEye OEToolkits" 2.0.4 "CNc1[nH]c2ccc(cc2n1)C(=O)N"                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6HD "SYSTEMATIC NAME" ACDLabs              12.01 "2-(methylamino)-1H-benzimidazole-5-carboxamide"    
6HD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-(methylamino)-1~{H}-benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6HD "Create component" 2016-04-11 EBI  
6HD "Initial release"  2017-05-24 RCSB 
# 
