data_5LD
#

_chem_comp.id                                   5LD
_chem_comp.name                                 "[(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H10 N3 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(R)-C348"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-09-10
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       207.124
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5LD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DNX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5LD  O10  O1   O  0  1  N  N  N  -36.415  20.159  44.365   2.598   0.589   1.643  O10  5LD   1  
5LD  P9   P1   P  0  1  N  N  N  -35.184  20.615  45.126   2.663   0.024   0.136  P9   5LD   2  
5LD  O11  O2   O  0  1  N  N  N  -34.309  19.423  45.536   4.044   0.485  -0.551  O11  5LD   3  
5LD  O12  O3   O  0  1  N  N  N  -34.386  21.626  44.312   2.593  -1.455   0.161  O12  5LD   4  
5LD  C8   C1   C  0  1  N  N  N  -35.793  21.367  46.638   1.258   0.682  -0.821  C8   5LD   5  
5LD  C7   C2   C  0  1  N  N  R  -34.757  21.603  47.753  -0.051   0.142  -0.242  C7   5LD   6  
5LD  O13  O4   O  0  1  N  N  N  -35.396  22.115  48.920  -0.103  -1.274  -0.421  O13  5LD   7  
5LD  C6   C3   C  0  1  N  N  N  -33.731  22.668  47.388  -1.234   0.791  -0.964  C6   5LD   8  
5LD  N2   N1   N  0  1  Y  N  N  -32.491  22.581  48.168  -2.485   0.366  -0.331  N2   5LD   9  
5LD  N1   N2   N  0  1  Y  N  N  -32.570  22.486  49.567  -2.915  -0.954  -0.119  N1   5LD  10  
5LD  C5   C4   C  0  1  Y  N  N  -31.264  22.451  49.951  -4.078  -0.882   0.472  C5   5LD  11  
5LD  N4   N3   N  0  1  Y  N  N  -30.455  22.473  48.866  -4.399   0.400   0.641  N4   5LD  12  
5LD  C3   C5   C  0  1  Y  N  N  -31.241  22.583  47.761  -3.447   1.162   0.167  C3   5LD  13  
5LD  H1   H1   H  0  1  N  N  N  -36.447  20.597  43.523   2.639   1.553   1.703  H1   5LD  14  
5LD  H2   H2   H  0  1  N  N  N  -33.429  19.545  45.200   4.835   0.169  -0.094  H2   5LD  15  
5LD  H3   H3   H  0  1  N  N  N  -36.229  22.342  46.375   1.259   1.771  -0.765  H3   5LD  16  
5LD  H4   H4   H  0  1  N  N  N  -36.578  20.712  47.044   1.350   0.372  -1.862  H4   5LD  17  
5LD  H5   H5   H  0  1  N  N  N  -34.240  20.657  47.973  -0.102   0.377   0.822  H5   5LD  18  
5LD  H6   H6   H  0  1  N  N  N  -34.748  22.256  49.600  -0.062  -1.556  -1.345  H6   5LD  19  
5LD  H7   H7   H  0  1  N  N  N  -33.480  22.558  46.323  -1.146   1.876  -0.903  H7   5LD  20  
5LD  H8   H8   H  0  1  N  N  N  -34.181  23.657  47.559  -1.233   0.485  -2.010  H8   5LD  21  
5LD  H9   H9   H  0  1  N  N  N  -30.923  22.411  50.975  -4.682  -1.725   0.774  H9   5LD  22  
5LD  H10  H10  H  0  1  N  N  N  -30.901  22.658  46.739  -3.437   2.242   0.172  H10  5LD  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5LD  O12  P9   DOUB  N  N   1  
5LD  O10  P9   SING  N  N   2  
5LD  P9   O11  SING  N  N   3  
5LD  P9   C8   SING  N  N   4  
5LD  C8   C7   SING  N  N   5  
5LD  C6   C7   SING  N  N   6  
5LD  C6   N2   SING  N  N   7  
5LD  C7   O13  SING  N  N   8  
5LD  C3   N2   SING  Y  N   9  
5LD  C3   N4   DOUB  Y  N  10  
5LD  N2   N1   SING  Y  N  11  
5LD  N4   C5   SING  Y  N  12  
5LD  N1   C5   DOUB  Y  N  13  
5LD  O10  H1   SING  N  N  14  
5LD  O11  H2   SING  N  N  15  
5LD  C8   H3   SING  N  N  16  
5LD  C8   H4   SING  N  N  17  
5LD  C7   H5   SING  N  N  18  
5LD  O13  H6   SING  N  N  19  
5LD  C6   H7   SING  N  N  20  
5LD  C6   H8   SING  N  N  21  
5LD  C5   H9   SING  N  N  22  
5LD  C3   H10  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5LD  SMILES            ACDLabs               12.01  "OP(O)(CC(O)Cn1ncnc1)=O"  
5LD  InChI             InChI                 1.03   "InChI=1S/C5H10N3O4P/c9-5(2-13(10,11)12)1-8-4-6-3-7-8/h3-5,9H,1-2H2,(H2,10,11,12)/t5-/m1/s1"  
5LD  InChIKey          InChI                 1.03   ZXKJPBBOMRHTCH-RXMQYKEDSA-N  
5LD  SMILES_CANONICAL  CACTVS                3.385  "O[C@H](Cn1cncn1)C[P](O)(O)=O"  
5LD  SMILES            CACTVS                3.385  "O[CH](Cn1cncn1)C[P](O)(O)=O"  
5LD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1ncn(n1)C[C@H](CP(=O)(O)O)O"  
5LD  SMILES            "OpenEye OEToolkits"  1.9.2  "c1ncn(n1)CC(CP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5LD  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid"  
5LD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R)-2-oxidanyl-3-(1,2,4-triazol-1-yl)propyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5LD  "Create component"    2015-09-10  EBI   
5LD  "Initial release"     2016-10-05  RCSB  
5LD  "Other modification"  2019-09-04  EBI   
5LD  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5LD
_pdbx_chem_comp_synonyms.name        "(R)-C348"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
