data_5ED
# 
_chem_comp.id                                    5ED 
_chem_comp.name                                  "ethyl (2Z,4S)-4-[(N-{[(2-cyclopropylethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H36 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        512.598 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5ED 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DP8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5ED N1  N1  N 0 1 N N N N N N -1.755  -8.756  -2.827 -4.591 -4.043 0.047  N1  5ED 1  
5ED C4  C1  C 0 1 Y N N N N N -10.486 -6.788  -0.495 1.690  2.637  1.012  C4  5ED 2  
5ED C5  C2  C 0 1 Y N N N N N -10.860 -8.115  -0.255 2.730  2.729  0.106  C5  5ED 3  
5ED C6  C3  C 0 1 Y N N N N N -11.955 -8.372  0.593  3.956  3.225  0.508  C6  5ED 4  
5ED C7  C4  C 0 1 Y N N N N N -12.667 -7.327  1.190  4.142  3.630  1.817  C7  5ED 5  
5ED C8  C5  C 0 1 Y N N N N N -12.296 -6.001  0.932  3.102  3.539  2.723  C8  5ED 6  
5ED C10 C6  C 0 1 N N S N N N -6.125  -7.910  -4.387 -3.431 -0.108 0.917  C10 5ED 7  
5ED C13 C7  C 0 1 N N N N N N -2.767  -9.504  -3.210 -4.783 -2.715 -0.040 C13 5ED 8  
5ED C15 C8  C 0 1 N N N N N N -7.773  -6.760  -5.915 -5.286 1.445  0.477  C15 5ED 9  
5ED C17 C9  C 0 1 N N N N N N -7.214  -7.008  -2.374 -1.042 0.045  0.463  C17 5ED 10 
5ED C20 C10 C 0 1 N N N N N N -6.304  -7.408  0.559  2.604  -0.152 0.289  C20 5ED 11 
5ED C22 C11 C 0 1 N N N N N N -6.112  -6.830  1.935  3.609  -0.795 -0.612 C22 5ED 12 
5ED C24 C12 C 0 1 N N N N N N -4.409  -10.235 5.793  9.703  -2.345 -0.812 C24 5ED 13 
5ED C26 C13 C 0 1 N N N N N N -3.526  -7.262  -3.022 -5.110 -3.319 2.274  C26 5ED 14 
5ED C1  C14 C 0 1 N N N N N N -4.846  -9.073  4.896  8.284  -2.160 -1.355 C1  5ED 15 
5ED C2  C15 C 0 1 N N S N N N -8.086  -7.286  -1.213 0.332  0.575  0.784  C2  5ED 16 
5ED C3  C16 C 0 1 N N N N N N -9.330  -6.434  -1.413 0.356  2.091  0.574  C3  5ED 17 
5ED C9  C17 C 0 1 Y N N N N N -11.206 -5.736  0.093  1.876  3.042  2.320  C9  5ED 18 
5ED C11 C18 C 0 1 N N N N N N -4.926  -8.880  -4.389 -3.549 -1.415 1.703  C11 5ED 19 
5ED C12 C19 C 0 1 N N S N N N -4.032  -8.695  -3.168 -4.865 -2.109 1.344  C12 5ED 20 
5ED C14 C20 C 0 1 N N N N N N -6.976  -8.065  -5.673 -4.501 0.850  1.372  C14 5ED 21 
5ED C16 C21 C 0 1 N N N N N N -7.015  -5.584  -6.502 -4.843 1.573  -0.919 C16 5ED 22 
5ED C18 C22 C 0 1 N N N N N N -6.753  -3.288  -5.664 -5.183 2.154  -3.210 C18 5ED 23 
5ED C23 C23 C 0 1 N N N N N N -3.683  -8.298  4.257  7.256  -1.502 -0.434 C23 5ED 24 
5ED C25 C24 C 0 1 N N N N N N -2.106  -7.396  -2.505 -4.512 -4.479 1.446  C25 5ED 25 
5ED O3  O1  O 0 1 N N N N N N -5.981  -5.683  -7.150 -3.715 1.246  -1.231 O3  5ED 26 
5ED O2  O2  O 0 1 N N N N N N -7.554  -4.263  -6.299 -5.688 2.054  -1.852 O2  5ED 27 
5ED C19 C25 C 0 1 N N N N N N -6.794  -3.598  -4.178 -6.276 2.716  -4.121 C19 5ED 28 
5ED O1  O3  O 0 1 N N N N N N -2.686  -10.677 -3.528 -4.876 -2.093 -1.077 O1  5ED 29 
5ED N   N2  N 0 1 N N N N N N -6.964  -8.044  -3.193 -2.112 0.486  1.153  N   5ED 30 
5ED O4  O4  O 0 1 N N N N N N -6.774  -5.870  -2.501 -1.184 -0.778 -0.417 O4  5ED 31 
5ED N2  N3  N 0 1 N N N N N N -7.483  -6.983  0.072  1.317  -0.055 -0.099 N2  5ED 32 
5ED O21 O5  O 0 1 N N N N N N -5.523  -8.139  -0.087 2.947  0.283  1.368  O21 5ED 33 
5ED O5  O6  O 0 1 N N N N N N -6.976  -6.046  2.314  3.266  -1.230 -1.691 O5  5ED 34 
5ED N6  N4  N 0 1 N N N N N N -5.161  -6.987  2.855  4.897  -0.891 -0.224 N6  5ED 35 
5ED C21 C26 C 0 1 N N N N N N -3.999  -7.829  2.830  5.882  -1.521 -1.107 C21 5ED 36 
5ED C27 C27 C 0 1 N N N N N N -5.082  -10.520 4.458  9.425  -1.286 -1.881 C27 5ED 37 
5ED H1  H1  H 0 1 N N N N N N -0.819  -9.103  -2.764 -4.518 -4.636 -0.716 H1  5ED 38 
5ED H2  H2  H 0 1 N N N N N N -10.318 -8.929  -0.713 2.585  2.412  -0.916 H2  5ED 39 
5ED H3  H3  H 0 1 N N N N N N -12.250 -9.393  0.785  4.769  3.295  -0.199 H3  5ED 40 
5ED H4  H4  H 0 1 N N N N N N -13.498 -7.541  1.846  5.100  4.017  2.132  H4  5ED 41 
5ED H5  H5  H 0 1 N N N N N N -12.848 -5.187  1.378  3.247  3.856  3.745  H5  5ED 42 
5ED H6  H6  H 0 1 N N N N N N -5.713  -6.890  -4.398 -3.553 -0.311 -0.147 H6  5ED 43 
5ED H7  H7  H 0 1 N N N N N N -8.824  -6.690  -5.676 -6.249 1.833  0.775  H7  5ED 44 
5ED H9  H9  H 0 1 N N N N N N -4.945  -10.436 6.733  9.903  -1.998 0.201  H9  5ED 45 
5ED H10 H10 H 0 1 N N N N N N -3.339  -10.454 5.927  10.246 -3.239 -1.119 H10 5ED 46 
5ED H11 H11 H 0 1 N N N N N N -3.536  -6.748  -3.994 -4.578 -3.200 3.218  H11 5ED 47 
5ED H12 H12 H 0 1 N N N N N N -4.147  -6.704  -2.306 -6.176 -3.471 2.445  H12 5ED 48 
5ED H13 H13 H 0 1 N N N N N N -5.724  -8.492  5.214  7.895  -2.932 -2.019 H13 5ED 49 
5ED H14 H14 H 0 1 N N N N N N -8.383  -8.345  -1.235 0.576  0.348  1.821  H14 5ED 50 
5ED H15 H15 H 0 1 N N N N N N -9.059  -5.383  -1.236 -0.437 2.551  1.164  H15 5ED 51 
5ED H16 H16 H 0 1 N N N N N N -9.667  -6.556  -2.453 0.200  2.314  -0.481 H16 5ED 52 
5ED H17 H17 H 0 1 N N N N N N -10.917 -4.714  -0.103 1.063  2.971  3.028  H17 5ED 53 
5ED H18 H18 H 0 1 N N N N N N -5.306  -9.912  -4.397 -2.713 -2.068 1.450  H18 5ED 54 
5ED H19 H19 H 0 1 N N N N N N -4.329  -8.702  -5.295 -3.532 -1.200 2.771  H19 5ED 55 
5ED H20 H20 H 0 1 N N N N N N -4.602  -8.964  -2.266 -5.695 -1.405 1.403  H20 5ED 56 
5ED H21 H21 H 0 1 N N N N N N -7.008  -8.943  -6.300 -4.632 1.054  2.424  H21 5ED 57 
5ED H23 H23 H 0 1 N N N N N N -5.719  -3.345  -6.036 -4.318 2.817  -3.228 H23 5ED 58 
5ED H24 H24 H 0 1 N N N N N N -7.156  -2.282  -5.854 -4.890 1.165  -3.562 H24 5ED 59 
5ED H25 H25 H 0 1 N N N N N N -2.799  -8.952  4.225  7.207  -2.050 0.507  H25 5ED 60 
5ED H26 H26 H 0 1 N N N N N N -3.464  -7.416  4.877  7.550  -0.471 -0.238 H26 5ED 61 
5ED H27 H27 H 0 1 N N N N N N -1.435  -6.687  -3.012 -5.101 -5.384 1.593  H27 5ED 62 
5ED H28 H28 H 0 1 N N N N N N -2.066  -7.227  -1.419 -3.474 -4.654 1.729  H28 5ED 63 
5ED H29 H29 H 0 1 N N N N N N -6.182  -2.864  -3.633 -6.569 3.705  -3.769 H29 5ED 64 
5ED H30 H30 H 0 1 N N N N N N -7.833  -3.546  -3.821 -5.897 2.790  -5.140 H30 5ED 65 
5ED H31 H31 H 0 1 N N N N N N -6.396  -4.609  -4.003 -7.141 2.053  -4.103 H31 5ED 66 
5ED H32 H32 H 0 1 N N N N N N -7.364  -8.936  -2.981 -2.010 1.196  1.805  H32 5ED 67 
5ED H33 H33 H 0 1 N N N N N N -8.012  -6.382  0.671  1.043  -0.403 -0.962 H33 5ED 68 
5ED H34 H34 H 0 1 N N N N N N -5.273  -6.438  3.683  5.171  -0.543 0.639  H34 5ED 69 
5ED H35 H35 H 0 1 N N N N N N -4.192  -8.703  2.190  5.930  -0.973 -2.048 H35 5ED 70 
5ED H36 H36 H 0 1 N N N N N N -3.144  -7.264  2.431  5.587  -2.553 -1.302 H36 5ED 71 
5ED H37 H37 H 0 1 N N N N N N -6.104  -10.927 4.434  9.443  -0.241 -1.570 H37 5ED 72 
5ED H38 H38 H 0 1 N N N N N N -4.498  -10.945 3.628  9.786  -1.482 -2.890 H38 5ED 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5ED O3  C16 DOUB N N 1  
5ED C16 O2  SING N N 2  
5ED C16 C15 SING N N 3  
5ED O2  C18 SING N N 4  
5ED C15 C14 DOUB N Z 5  
5ED C14 C10 SING N N 6  
5ED C18 C19 SING N N 7  
5ED C11 C10 SING N N 8  
5ED C11 C12 SING N N 9  
5ED C10 N   SING N N 10 
5ED O1  C13 DOUB N N 11 
5ED C13 C12 SING N N 12 
5ED C13 N1  SING N N 13 
5ED N   C17 SING N N 14 
5ED C12 C26 SING N N 15 
5ED C26 C25 SING N N 16 
5ED N1  C25 SING N N 17 
5ED O4  C17 DOUB N N 18 
5ED C17 C2  SING N N 19 
5ED C3  C2  SING N N 20 
5ED C3  C4  SING N N 21 
5ED C2  N2  SING N N 22 
5ED C4  C5  DOUB Y N 23 
5ED C4  C9  SING Y N 24 
5ED C5  C6  SING Y N 25 
5ED O21 C20 DOUB N N 26 
5ED N2  C20 SING N N 27 
5ED C9  C8  DOUB Y N 28 
5ED C20 C22 SING N N 29 
5ED C6  C7  DOUB Y N 30 
5ED C8  C7  SING Y N 31 
5ED C22 O5  DOUB N N 32 
5ED C22 N6  SING N N 33 
5ED C21 N6  SING N N 34 
5ED C21 C23 SING N N 35 
5ED C23 C1  SING N N 36 
5ED C27 C1  SING N N 37 
5ED C27 C24 SING N N 38 
5ED C1  C24 SING N N 39 
5ED N1  H1  SING N N 40 
5ED C5  H2  SING N N 41 
5ED C6  H3  SING N N 42 
5ED C7  H4  SING N N 43 
5ED C8  H5  SING N N 44 
5ED C10 H6  SING N N 45 
5ED C15 H7  SING N N 46 
5ED C24 H9  SING N N 47 
5ED C24 H10 SING N N 48 
5ED C26 H11 SING N N 49 
5ED C26 H12 SING N N 50 
5ED C1  H13 SING N N 51 
5ED C2  H14 SING N N 52 
5ED C3  H15 SING N N 53 
5ED C3  H16 SING N N 54 
5ED C9  H17 SING N N 55 
5ED C11 H18 SING N N 56 
5ED C11 H19 SING N N 57 
5ED C12 H20 SING N N 58 
5ED C14 H21 SING N N 59 
5ED C18 H23 SING N N 60 
5ED C18 H24 SING N N 61 
5ED C23 H25 SING N N 62 
5ED C23 H26 SING N N 63 
5ED C25 H27 SING N N 64 
5ED C25 H28 SING N N 65 
5ED C19 H29 SING N N 66 
5ED C19 H30 SING N N 67 
5ED C19 H31 SING N N 68 
5ED N   H32 SING N N 69 
5ED N2  H33 SING N N 70 
5ED N6  H34 SING N N 71 
5ED C21 H35 SING N N 72 
5ED C21 H36 SING N N 73 
5ED C27 H37 SING N N 74 
5ED C27 H38 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5ED SMILES           ACDLabs              12.01 "N1CCC(C1=O)CC(NC(C(NC(C(=O)NCCC2CC2)=O)Cc3ccccc3)=O)C=[C@H]C(OCC)=O"                                                                                                                                                                
5ED InChI            InChI                1.03  "InChI=1S/C27H36N4O6/c1-2-37-23(32)11-10-21(17-20-13-15-28-24(20)33)30-25(34)22(16-19-6-4-3-5-7-19)31-27(36)26(35)29-14-12-18-8-9-18/h3-7,10-11,18,20-22H,2,8-9,12-17H2,1H3,(H,28,33)(H,29,35)(H,30,34)(H,31,36)/t20-,21+,22-/m0/s1" 
5ED InChIKey         InChI                1.03  HYAHTJFZAHAFHT-BDTNDASRSA-N                                                                                                                                                                                                          
5ED SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)\C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCCC3CC3"                                                                                                                                                       
5ED SMILES           CACTVS               3.385 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)C(=O)NCCC3CC3"                                                                                                                                                             
5ED SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)C(=O)NCCC3CC3"                                                                                                                                                         
5ED SMILES           "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(=O)NCCC3CC3"                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5ED "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (2Z,4S)-4-[(N-{[(2-cyclopropylethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"                                      
5ED "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "ethyl (4S)-4-[[(2S)-2-[[2-(2-cyclopropylethylamino)-2-oxidanylidene-ethanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5ED "Create component" 2015-09-16 RCSB 
5ED "Initial release"  2016-03-30 RCSB 
5ED "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5ED 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
