data_3XD
# 
_chem_comp.id                                    3XD 
_chem_comp.name                                  "6-{[(3R,4R)-4-{2-[(2,2-difluoro-2-phenylethyl)amino]ethoxy}pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H28 F2 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-30 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.470 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3XD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3NLZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3XD C1     C1     C 0 1 N N N 6.705  0.415  24.529 0.233  2.623  1.363  C1     3XD 1  
3XD O1     O1     O 0 1 N N N 6.639  1.388  25.563 -0.695 1.848  0.600  O1     3XD 2  
3XD C2     C2     C 0 1 N N N 7.937  0.719  23.691 1.436  1.755  1.738  C2     3XD 3  
3XD N2     N2     N 0 1 N N N 9.138  0.437  24.459 2.161  1.370  0.520  N2     3XD 4  
3XD C3     C3     C 0 1 N N N 10.415 0.983  24.035 3.325  0.534  0.842  C3     3XD 5  
3XD C4     C4     C 0 1 N N N 10.894 0.210  22.804 4.052  0.154  -0.449 C4     3XD 6  
3XD F5     F5     F 0 1 N N N 10.106 0.459  21.768 3.183  -0.559 -1.282 F5     3XD 7  
3XD F6     F6     F 0 1 N N N 10.810 -1.079 23.095 4.478  1.314  -1.104 F6     3XD 8  
3XD "N1'"  "N1'"  N 0 1 N N N 6.780  1.572  28.430 -2.958 3.085  -1.870 "N1'"  3XD 9  
3XD C11    C11    C 0 1 Y N N 12.311 0.625  22.454 5.247  -0.704 -0.119 C11    3XD 10 
3XD C12    C12    C 0 1 Y N N 12.544 1.489  21.387 6.472  -0.115 0.132  C12    3XD 11 
3XD C13    C13    C 0 1 Y N N 13.845 1.882  21.054 7.568  -0.902 0.434  C13    3XD 12 
3XD C14    C14    C 0 1 Y N N 14.906 1.399  21.821 7.438  -2.277 0.486  C14    3XD 13 
3XD C15    C15    C 0 1 Y N N 14.695 0.540  22.894 6.213  -2.866 0.237  C15    3XD 14 
3XD C16    C16    C 0 1 Y N N 13.391 0.148  23.207 5.116  -2.079 -0.061 C16    3XD 15 
3XD N1A    N1A    N 0 1 Y N N 5.262  5.991  26.566 -4.881 -0.475 0.983  N1A    3XD 16 
3XD "C2'"  "C2'"  C 0 1 N N N 6.159  0.462  27.738 -1.643 3.208  -1.191 "C2'"  3XD 17 
3XD C2A    C2A    C 0 1 Y N N 4.448  4.892  26.591 -3.820 -0.743 0.247  C2A    3XD 18 
3XD "C3'"  "C3'"  C 0 1 N N R 5.592  1.156  26.508 -1.861 2.568  0.197  "C3'"  3XD 19 
3XD C3A    C3A    C 0 1 Y N N 3.197  4.949  27.208 -3.795 -1.844 -0.586 C3A    3XD 20 
3XD "C4'"  "C4'"  C 0 1 N N R 5.139  2.521  27.031 -3.049 1.602  0.011  "C4'"  3XD 21 
3XD C4A    C4A    C 0 1 Y N N 2.801  6.145  27.803 -4.903 -2.678 -0.645 C4A    3XD 22 
3XD "C5'"  "C5'"  C 0 1 N N N 6.223  2.874  28.057 -3.449 1.740  -1.474 "C5'"  3XD 23 
3XD C5A    C5A    C 0 1 Y N N 3.652  7.256  27.760 -6.001 -2.372 0.140  C5A    3XD 24 
3XD C6A    C6A    C 0 1 Y N N 4.898  7.177  27.131 -5.958 -1.246 0.955  C6A    3XD 25 
3XD N6A    N6A    N 0 1 N N N 5.730  8.272  27.077 -7.054 -0.927 1.748  N6A    3XD 26 
3XD C7A    C7A    C 0 1 N N N 4.908  3.596  25.946 -2.619 0.166  0.314  C7A    3XD 27 
3XD C8A    C8A    C 0 1 N N N 1.453  6.233  28.484 -4.911 -3.888 -1.542 C8A    3XD 28 
3XD H1     H1     H 0 1 N N N 5.801  0.465  23.904 0.569  3.473  0.770  H1     3XD 29 
3XD H1A    H1A    H 0 1 N N N 6.782  -0.593 24.962 -0.253 2.982  2.270  H1A    3XD 30 
3XD H2     H2     H 0 1 N N N 7.927  0.092  22.787 2.100  2.318  2.393  H2     3XD 31 
3XD H2A    H2A    H 0 1 N N N 7.929  1.781  23.404 1.091  0.859  2.254  H2A    3XD 32 
3XD HN2    HN2    H 0 1 N N N 8.972  0.799  25.376 1.549  0.902  -0.132 HN2    3XD 33 
3XD H3     H3     H 0 1 N N N 10.299 2.047  23.783 4.002  1.089  1.490  H3     3XD 34 
3XD H3A    H3A    H 0 1 N N N 11.150 0.881  24.847 2.993  -0.370 1.351  H3A    3XD 35 
3XD "HN1'" "HN1'" H 0 0 N N N 6.643  1.444  29.412 -3.592 3.807  -1.564 "HN1'" 3XD 36 
3XD H12    H12    H 0 1 N N N 11.710 1.860  20.809 6.574  0.959  0.091  H12    3XD 37 
3XD H13    H13    H 0 1 N N N 14.024 2.545  20.221 8.525  -0.442 0.629  H13    3XD 38 
3XD H14    H14    H 0 1 N N N 15.914 1.699  21.576 8.294  -2.892 0.722  H14    3XD 39 
3XD H15    H15    H 0 1 N N N 15.529 0.180  23.478 6.111  -3.940 0.277  H15    3XD 40 
3XD H16    H16    H 0 1 N N N 13.215 -0.525 24.033 4.157  -2.538 -0.253 H16    3XD 41 
3XD "H2'"  "H2'"  H 0 1 N N N 6.883  -0.324 27.477 -0.876 2.665  -1.743 "H2'"  3XD 42 
3XD "H2'A" "H2'A" H 0 0 N N N 5.377  -0.021 28.342 -1.365 4.257  -1.088 "H2'A" 3XD 43 
3XD "H3'"  "H3'"  H 0 1 N N N 4.796  0.568  26.027 -2.105 3.334  0.933  "H3'"  3XD 44 
3XD H3AA   H3AA   H 0 0 N N N 2.550  4.084  27.224 -2.921 -2.055 -1.186 H3AA   3XD 45 
3XD "H4'"  "H4'"  H 0 1 N N N 4.133  2.481  27.473 -3.879 1.894  0.655  "H4'"  3XD 46 
3XD "H5'"  "H5'"  H 0 1 N N N 5.799  3.395  28.928 -4.532 1.684  -1.582 "H5'"  3XD 47 
3XD "H5'A" "H5'A" H 0 0 N N N 6.991  3.531  27.622 -2.966 0.967  -2.071 "H5'A" 3XD 48 
3XD H5A    H5A    H 0 1 N N N 3.343  8.184  28.218 -6.880 -2.999 0.118  H5A    3XD 49 
3XD HN6A   HN6A   H 0 0 N N N 6.567  8.031  26.586 -7.028 -0.143 2.318  HN6A   3XD 50 
3XD HN6B   HN6B   H 0 0 N N N 5.267  9.019  26.600 -7.845 -1.489 1.731  HN6B   3XD 51 
3XD H7A    H7A    H 0 1 N N N 4.137  3.245  25.244 -2.185 0.120  1.313  H7A    3XD 52 
3XD H7AA   H7AA   H 0 0 N N N 5.848  3.773  25.403 -1.879 -0.155 -0.419 H7AA   3XD 53 
3XD H8A    H8A    H 0 1 N N N 1.558  5.955  29.543 -4.525 -4.749 -0.995 H8A    3XD 54 
3XD H8AA   H8AA   H 0 0 N N N 1.072  7.262  28.411 -5.930 -4.092 -1.869 H8AA   3XD 55 
3XD H8AB   H8AB   H 0 0 N N N 0.749  5.545  27.993 -4.281 -3.699 -2.412 H8AB   3XD 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3XD C2    C1     SING N N 1  
3XD C1    O1     SING N N 2  
3XD C1    H1     SING N N 3  
3XD C1    H1A    SING N N 4  
3XD O1    "C3'"  SING N N 5  
3XD C2    N2     SING N N 6  
3XD C2    H2     SING N N 7  
3XD C2    H2A    SING N N 8  
3XD C3    N2     SING N N 9  
3XD N2    HN2    SING N N 10 
3XD C4    C3     SING N N 11 
3XD C3    H3     SING N N 12 
3XD C3    H3A    SING N N 13 
3XD F5    C4     SING N N 14 
3XD C11   C4     SING N N 15 
3XD C4    F6     SING N N 16 
3XD "C2'" "N1'"  SING N N 17 
3XD "C5'" "N1'"  SING N N 18 
3XD "N1'" "HN1'" SING N N 19 
3XD C12   C11    DOUB Y N 20 
3XD C11   C16    SING Y N 21 
3XD C13   C12    SING Y N 22 
3XD C12   H12    SING N N 23 
3XD C13   C14    DOUB Y N 24 
3XD C13   H13    SING N N 25 
3XD C14   C15    SING Y N 26 
3XD C14   H14    SING N N 27 
3XD C15   C16    DOUB Y N 28 
3XD C15   H15    SING N N 29 
3XD C16   H16    SING N N 30 
3XD N1A   C2A    DOUB Y N 31 
3XD N1A   C6A    SING Y N 32 
3XD "C3'" "C2'"  SING N N 33 
3XD "C2'" "H2'"  SING N N 34 
3XD "C2'" "H2'A" SING N N 35 
3XD C7A   C2A    SING N N 36 
3XD C2A   C3A    SING Y N 37 
3XD "C3'" "C4'"  SING N N 38 
3XD "C3'" "H3'"  SING N N 39 
3XD C3A   C4A    DOUB Y N 40 
3XD C3A   H3AA   SING N N 41 
3XD C7A   "C4'"  SING N N 42 
3XD "C4'" "C5'"  SING N N 43 
3XD "C4'" "H4'"  SING N N 44 
3XD C5A   C4A    SING Y N 45 
3XD C4A   C8A    SING N N 46 
3XD "C5'" "H5'"  SING N N 47 
3XD "C5'" "H5'A" SING N N 48 
3XD C6A   C5A    DOUB Y N 49 
3XD C5A   H5A    SING N N 50 
3XD N6A   C6A    SING N N 51 
3XD N6A   HN6A   SING N N 52 
3XD N6A   HN6B   SING N N 53 
3XD C7A   H7A    SING N N 54 
3XD C7A   H7AA   SING N N 55 
3XD C8A   H8A    SING N N 56 
3XD C8A   H8AA   SING N N 57 
3XD C8A   H8AB   SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3XD SMILES           ACDLabs              12.01 "FC(F)(c1ccccc1)CNCCOC2C(CNC2)Cc3nc(N)cc(c3)C"                                                                                                                               
3XD SMILES_CANONICAL CACTVS               3.370 "Cc1cc(N)nc(C[C@@H]2CNC[C@@H]2OCCNCC(F)(F)c3ccccc3)c1"                                                                                                                       
3XD SMILES           CACTVS               3.370 "Cc1cc(N)nc(C[CH]2CNC[CH]2OCCNCC(F)(F)c3ccccc3)c1"                                                                                                                           
3XD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)C[C@@H]2CNC[C@@H]2OCCNCC(c3ccccc3)(F)F"                                                                                                                       
3XD SMILES           "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)CC2CNCC2OCCNCC(c3ccccc3)(F)F"                                                                                                                                 
3XD InChI            InChI                1.03  "InChI=1S/C21H28F2N4O/c1-15-9-18(27-20(24)10-15)11-16-12-26-13-19(16)28-8-7-25-14-21(22,23)17-5-3-2-4-6-17/h2-6,9-10,16,19,25-26H,7-8,11-14H2,1H3,(H2,24,27)/t16-,19+/m1/s1" 
3XD InChIKey         InChI                1.03  RTMROEXMNLIGEG-APWZRJJASA-N                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3XD "SYSTEMATIC NAME" ACDLabs              12.01 "6-{[(3R,4R)-4-{2-[(2,2-difluoro-2-phenylethyl)amino]ethoxy}pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine"   
3XD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "6-[[(3R,4R)-4-[2-[(2,2-difluoro-2-phenyl-ethyl)amino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3XD "Create component"     2010-06-30 RCSB 
3XD "Modify aromatic_flag" 2011-06-04 RCSB 
3XD "Modify descriptor"    2011-06-04 RCSB 
# 
