data_3KD
# 
_chem_comp.id                                    3KD 
_chem_comp.name                                  "(1S,2S,12bS,12cS)-2,4,5,7,12b,12c-hexahydro-1H-[1,3]dioxolo[4,5-j]pyrrolo[3,2,1-de]phenanthridine-1,2-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H17 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-03 
_chem_comp.pdbx_modified_date                    2014-10-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        287.310 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3KD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4U4U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3KD C1  C1  C 0 1 N N N 29.423 6.823 58.904 2.534  -2.792 0.052  C1  3KD 1  
3KD C2  C2  C 0 1 N N N 29.063 7.091 61.383 0.069  -2.408 -0.022 C2  3KD 2  
3KD C3  C3  C 0 1 Y N N 29.163 6.313 62.671 -0.935 -1.273 0.034  C3  3KD 3  
3KD C4  C4  C 0 1 Y N N 28.536 6.774 63.827 -2.277 -1.626 -0.113 C4  3KD 4  
3KD C5  C5  C 0 1 Y N N 28.762 6.091 65.005 -3.226 -0.617 -0.070 C5  3KD 5  
3KD C6  C6  C 0 1 Y N N 29.592 5.002 65.048 -2.849 0.722  0.115  C6  3KD 6  
3KD C7  C7  C 0 1 Y N N 30.205 4.517 63.918 -1.516 1.070  0.262  C7  3KD 7  
3KD C8  C8  C 0 1 Y N N 29.969 5.166 62.716 -0.571 0.051  0.218  C8  3KD 8  
3KD C9  C9  C 0 1 N N S 30.537 4.584 61.481 0.881  0.415  0.380  C9  3KD 9  
3KD C10 C10 C 0 1 N N S 30.657 5.797 60.565 1.666  -0.696 -0.334 C10 3KD 10 
3KD C11 C11 C 0 1 N N N 31.162 5.226 59.278 3.140  -0.437 -0.092 C11 3KD 11 
3KD C12 C12 C 0 1 N N N 32.008 4.196 59.198 3.627  0.761  -0.013 C12 3KD 12 
3KD C13 C13 C 0 1 N N S 32.445 3.479 60.415 2.774  1.992  -0.111 C13 3KD 13 
3KD C14 C14 C 0 1 N N S 31.935 4.081 61.704 1.282  1.727  -0.272 C14 3KD 14 
3KD C15 C15 C 0 1 N N N 28.841 5.372 67.121 -5.061 0.581  0.322  C15 3KD 15 
3KD O1  O1  O 0 1 N N N 31.928 2.160 60.334 2.968  2.771  1.071  O1  3KD 16 
3KD N   N1  N 0 1 N N N 29.283 6.215 60.227 1.380  -1.947 0.422  N   3KD 17 
3KD C   C16 C 0 1 N N N 30.417 5.917 58.174 3.741  -1.811 0.078  C   3KD 18 
3KD O   O2  O 0 1 N N N 32.655 5.257 61.983 0.964  1.673  -1.664 O   3KD 19 
3KD O2  O3  O 0 1 N N N 29.763 4.593 66.352 -3.961 1.492  0.116  O2  3KD 20 
3KD O3  O4  O 0 1 N N N 28.247 6.342 66.262 -4.572 -0.678 -0.185 O3  3KD 21 
3KD H1  H1  H 0 1 N N N 29.816 7.847 58.986 2.673  -3.589 0.783  H1  3KD 22 
3KD H2  H2  H 0 1 N N N 28.456 6.842 58.380 2.398  -3.210 -0.945 H2  3KD 23 
3KD H3  H3  H 0 1 N N N 29.823 7.887 61.382 -0.266 -3.218 0.626  H3  3KD 24 
3KD H4  H4  H 0 1 N N N 28.062 7.540 61.310 0.143  -2.774 -1.046 H4  3KD 25 
3KD H5  H5  H 0 1 N N N 27.892 7.641 63.802 -2.569 -2.656 -0.256 H5  3KD 26 
3KD H6  H6  H 0 1 N N N 30.853 3.654 63.965 -1.220 2.099  0.404  H6  3KD 27 
3KD H7  H7  H 0 1 N N N 29.886 3.811 61.046 1.137  0.440  1.440  H7  3KD 28 
3KD H8  H8  H 0 1 N N N 31.287 6.599 60.977 1.411  -0.775 -1.391 H8  3KD 29 
3KD H9  H9  H 0 1 N N N 32.378 3.883 58.233 4.691  0.879  0.131  H9  3KD 30 
3KD H10 H10 H 0 1 N N N 33.544 3.453 60.446 3.114  2.579  -0.964 H10 3KD 31 
3KD H11 H11 H 0 1 N N N 31.972 3.351 62.526 0.723  2.541  0.189  H11 3KD 32 
3KD H12 H12 H 0 1 N N N 29.374 5.877 67.940 -5.296 0.500  1.383  H12 3KD 33 
3KD H13 H13 H 0 1 N N N 28.061 4.719 67.539 -5.937 0.907  -0.238 H13 3KD 34 
3KD H14 H14 H 0 1 N N N 32.191 1.669 61.103 3.882  3.056  1.209  H14 3KD 35 
3KD H16 H16 H 0 1 N N N 29.889 5.187 57.543 4.264  -1.879 1.031  H16 3KD 36 
3KD H17 H17 H 0 1 N N N 31.103 6.511 57.552 4.423  -2.029 -0.744 H17 3KD 37 
3KD H18 H18 H 0 1 N N N 32.337 5.639 62.793 1.192  2.477  -2.151 H18 3KD 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3KD C   C1  SING N N 1  
3KD C   C11 SING N N 2  
3KD C1  N   SING N N 3  
3KD C12 C11 DOUB N N 4  
3KD C12 C13 SING N N 5  
3KD C11 C10 SING N N 6  
3KD N   C10 SING N N 7  
3KD N   C2  SING N N 8  
3KD O1  C13 SING N N 9  
3KD C13 C14 SING N N 10 
3KD C10 C9  SING N N 11 
3KD C2  C3  SING N N 12 
3KD C9  C14 SING N N 13 
3KD C9  C8  SING N N 14 
3KD C14 O   SING N N 15 
3KD C3  C8  SING Y N 16 
3KD C3  C4  DOUB Y N 17 
3KD C8  C7  DOUB Y N 18 
3KD C4  C5  SING Y N 19 
3KD C7  C6  SING Y N 20 
3KD C5  C6  DOUB Y N 21 
3KD C5  O3  SING N N 22 
3KD C6  O2  SING N N 23 
3KD O3  C15 SING N N 24 
3KD O2  C15 SING N N 25 
3KD C1  H1  SING N N 26 
3KD C1  H2  SING N N 27 
3KD C2  H3  SING N N 28 
3KD C2  H4  SING N N 29 
3KD C4  H5  SING N N 30 
3KD C7  H6  SING N N 31 
3KD C9  H7  SING N N 32 
3KD C10 H8  SING N N 33 
3KD C12 H9  SING N N 34 
3KD C13 H10 SING N N 35 
3KD C14 H11 SING N N 36 
3KD C15 H12 SING N N 37 
3KD C15 H13 SING N N 38 
3KD O1  H14 SING N N 39 
3KD C   H16 SING N N 40 
3KD C   H17 SING N N 41 
3KD O   H18 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3KD SMILES           ACDLabs              12.01 "O1c2c(OC1)cc3c(c2)C5C(O)C(O)C=C4C5N(C3)CC4"                                                                                                   
3KD InChI            InChI                1.03  "InChI=1S/C16H17NO4/c18-11-3-8-1-2-17-6-9-4-12-13(21-7-20-12)5-10(9)14(15(8)17)16(11)19/h3-5,11,14-16,18-19H,1-2,6-7H2/t11-,14-,15+,16+/m0/s1" 
3KD InChIKey         InChI                1.03  XGVJWXAYKUHDOO-DANNLKNASA-N                                                                                                                    
3KD SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C=C2CCN3Cc4cc5OCOc5cc4[C@H]([C@@H]1O)[C@@H]23"                                                                                         
3KD SMILES           CACTVS               3.385 "O[CH]1C=C2CCN3Cc4cc5OCOc5cc4[CH]([CH]1O)[CH]23"                                                                                               
3KD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c2c(cc3c1OCO3)[C@@H]4[C@@H]([C@H](C=C5[C@H]4N(C2)CC5)O)O"                                                                                   
3KD SMILES           "OpenEye OEToolkits" 1.9.2 "c1c2c(cc3c1OCO3)C4C(C(C=C5C4N(C2)CC5)O)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3KD "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,12bS,12cS)-2,4,5,7,12b,12c-hexahydro-1H-[1,3]dioxolo[4,5-j]pyrrolo[3,2,1-de]phenanthridine-1,2-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3KD "Create component"  2014-09-03 EBI  
3KD "Modify descriptor" 2014-09-05 RCSB 
3KD "Initial release"   2014-10-22 RCSB 
# 
