data_3HD
# 
_chem_comp.id                                    3HD 
_chem_comp.name                                  1,5-anhydro-3-O-methyl-D-mannitol 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C7 H14 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         3-O-METHYL-O-ALPHA-D-MANNOPYRANOSYL 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-06-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        178.183 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3HD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      3HD 
_pdbx_chem_comp_synonyms.name         3-O-METHYL-O-ALPHA-D-MANNOPYRANOSYL 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3HD C1  C1  C 0 1 N N N N N N 8.908  6.408 -2.748 -0.133 1.797  -0.780 C1  3HD 1  
3HD C2  C2  C 0 1 N N R N N N 7.705  6.647 -3.655 1.184  1.264  -0.211 C2  3HD 2  
3HD O2  O2  O 0 1 N N N N N N 7.010  7.810 -3.227 1.305  1.649  1.160  O2  3HD 3  
3HD C3  C3  C 0 1 N N R N N N 8.163  6.830 -5.098 1.192  -0.265 -0.317 C3  3HD 4  
3HD O3  O3  O 0 1 N N N N N N 7.053  7.189 -5.910 2.345  -0.786 0.347  O3  3HD 5  
3HD CH3 CH3 C 0 1 N N N N N N 6.125  6.117 -6.000 3.386  -0.859 -0.630 CH3 3HD 6  
3HD C4  C4  C 0 1 N N R N N N 9.223  7.923 -5.171 -0.076 -0.812 0.348  C4  3HD 7  
3HD O4  O4  O 0 1 N N N N N N 9.741  7.997 -6.492 -0.168 -2.222 0.131  O4  3HD 8  
3HD C5  C5  C 0 1 N N R N N N 10.355 7.624 -4.195 -1.297 -0.119 -0.261 C5  3HD 9  
3HD O5  O5  O 0 1 N N N N N N 9.835  7.490 -2.859 -1.228 1.285  -0.024 O5  3HD 10 
3HD C6  C6  C 0 1 N N N N N N 11.394 8.727 -4.160 -2.570 -0.681 0.377  C6  3HD 11 
3HD O6  O6  O 0 1 N N N N N N 12.046 8.858 -5.414 -3.714 -0.130 -0.278 O6  3HD 12 
3HD H1  H1  H 0 1 N N N N N N 9.392  5.424 -2.949 -0.135 2.886  -0.730 H1  3HD 13 
3HD HC1 HC1 H 0 1 N N N N N N 8.603  6.229 -1.691 -0.232 1.483  -1.819 HC1 3HD 14 
3HD H2  H2  H 0 1 N N N N N N 7.036  5.775 -3.599 2.019  1.674  -0.779 H2  3HD 15 
3HD HO2 HO2 H 0 1 N Y N N N N 6.855  7.760 -2.291 1.295  2.616  1.181  HO2 3HD 16 
3HD H3  H3  H 0 1 N N N N N N 8.592  5.885 -5.462 1.210  -0.558 -1.367 H3  3HD 17 
3HD H31 H31 H 0 1 N N N N N N 5.205  6.382 -5.458 4.291  -1.253 -0.167 H31 3HD 18 
3HD H32 H32 H 0 1 N N N N N N 6.566  5.212 -5.556 3.076  -1.517 -1.442 H32 3HD 19 
3HD H33 H33 H 0 1 N N N N N N 5.885  5.927 -7.057 3.584  0.137  -1.025 H33 3HD 20 
3HD H4  H4  H 0 1 N N N N N N 8.763  8.885 -4.901 -0.038 -0.610 1.419  H4  3HD 21 
3HD HO4 HO4 H 0 1 N Y N N N N 9.023  8.014 -7.114 -0.981 -2.519 0.562  HO4 3HD 22 
3HD H5  H5  H 0 1 N N N N N N 10.824 6.692 -4.543 -1.318 -0.305 -1.335 H5  3HD 23 
3HD H61 H61 H 0 1 N N N N N N 12.147 8.473 -3.400 -2.580 -1.766 0.274  H61 3HD 24 
3HD H62 H62 H 0 1 N N N N N N 10.897 9.677 -3.916 -2.593 -0.416 1.434  H62 3HD 25 
3HD HO6 HO6 H 0 1 N Y N N N N 11.397 8.887 -6.107 -4.492 -0.509 0.154  HO6 3HD 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3HD C1  C2  SING N N 1  
3HD C1  O5  SING N N 2  
3HD C1  H1  SING N N 3  
3HD C1  HC1 SING N N 4  
3HD C2  O2  SING N N 5  
3HD C2  C3  SING N N 6  
3HD C2  H2  SING N N 7  
3HD O2  HO2 SING N N 8  
3HD C3  O3  SING N N 9  
3HD C3  C4  SING N N 10 
3HD C3  H3  SING N N 11 
3HD O3  CH3 SING N N 12 
3HD CH3 H31 SING N N 13 
3HD CH3 H32 SING N N 14 
3HD CH3 H33 SING N N 15 
3HD C4  O4  SING N N 16 
3HD C4  C5  SING N N 17 
3HD C4  H4  SING N N 18 
3HD O4  HO4 SING N N 19 
3HD C5  O5  SING N N 20 
3HD C5  C6  SING N N 21 
3HD C5  H5  SING N N 22 
3HD C6  O6  SING N N 23 
3HD C6  H61 SING N N 24 
3HD C6  H62 SING N N 25 
3HD O6  HO6 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3HD SMILES           ACDLabs              10.04 "O(C)C1C(O)C(OCC1O)CO"                                                               
3HD SMILES_CANONICAL CACTVS               3.341 "CO[C@@H]1[C@H](O)CO[C@H](CO)[C@H]1O"                                                
3HD SMILES           CACTVS               3.341 "CO[CH]1[CH](O)CO[CH](CO)[CH]1O"                                                     
3HD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@@H](CO[C@@H]([C@H]1O)CO)O"                                              
3HD SMILES           "OpenEye OEToolkits" 1.5.0 "COC1C(COC(C1O)CO)O"                                                                 
3HD InChI            InChI                1.03  "InChI=1S/C7H14O5/c1-11-7-4(9)3-12-5(2-8)6(7)10/h4-10H,2-3H2,1H3/t4-,5-,6-,7-/m1/s1" 
3HD InChIKey         InChI                1.03  GWYGLRYBQUSWAT-DBRKOABJSA-N                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3HD "SYSTEMATIC NAME" ACDLabs              10.04 1,5-anhydro-3-O-methyl-D-mannitol                          
3HD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-2-(hydroxymethyl)-4-methoxy-oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
3HD "CARBOHYDRATE ISOMER"                 D        PDB ? 
3HD "CARBOHYDRATE RING"                   pyranose PDB ? 
3HD "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3HD "Create component"         2006-06-30 RCSB 
3HD "Modify descriptor"        2011-06-04 RCSB 
3HD "Other modification"       2020-07-03 RCSB 
3HD "Modify name"              2020-07-17 RCSB 
3HD "Modify synonyms"          2020-07-17 RCSB 
3HD "Modify internal type"     2020-07-17 RCSB 
3HD "Modify linking type"      2020-07-17 RCSB 
3HD "Modify leaving atom flag" 2020-07-17 RCSB 
3HD "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3HD 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
