data_3ED
#

_chem_comp.id                                   3ED
_chem_comp.name                                 "6-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-(2,3-dichlorophenyl)-2-methylpyrimidin-4(3H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 Cl2 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-04
_chem_comp.pdbx_modified_date                   2021-10-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.336
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3ED
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7R7L
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3ED  C02   C1   C   0  1  N  N  S  -13.540  26.966  33.659   5.980  -0.534  -0.857  C02   3ED   1  
3ED  C03   C2   C   0  1  N  N  S  -14.323  28.293  33.137   7.148   0.382  -0.424  C03   3ED   2  
3ED  C04   C3   C   0  1  N  N  N  -14.227  29.425  34.190   8.381  -0.456  -0.077  C04   3ED   3  
3ED  C06   C4   C   0  1  N  N  N  -15.720  26.481  33.615   5.278   1.394   0.458  C06   3ED   4  
3ED  C07   C5   C   0  1  N  N  N  -14.505  25.867  33.516   4.732   0.150  -0.267  C07   3ED   5  
3ED  C08   C6   C   0  1  N  N  N  -14.130  25.497  32.165   3.777   0.564  -1.380  C08   3ED   6  
3ED  C09   C7   C   0  1  N  N  N  -14.680  24.144  31.718   2.574   1.294  -0.772  C09   3ED   7  
3ED  C11   C8   C   0  1  N  N  N  -13.492  21.782  32.422   0.641   0.119   0.232  C11   3ED   8  
3ED  C13   C9   C   0  1  N  N  N  -12.013  20.498  30.768  -1.258  -0.313  -1.005  C13   3ED   9  
3ED  C14   C10  C   0  1  N  N  N  -11.322  20.442  29.410  -1.921  -0.443  -2.353  C14   3ED  10  
3ED  C16   C11  C   0  1  Y  N  N  -11.094  18.167  31.392  -3.352  -0.842   0.010  C16   3ED  11  
3ED  C17   C12  C   0  1  Y  N  N   -9.640  18.147  31.724  -4.310   0.164  -0.017  C17   3ED  12  
3ED  C19   C13  C   0  1  Y  N  N   -8.811  16.937  31.394  -5.650  -0.163  -0.122  C19   3ED  13  
3ED  C21   C14  C   0  1  Y  N  N   -9.453  15.732  30.725  -6.036  -1.489  -0.200  C21   3ED  14  
3ED  C22   C15  C   0  1  Y  N  N  -10.966  15.753  30.382  -5.083  -2.492  -0.172  C22   3ED  15  
3ED  C23   C16  C   0  1  Y  N  N  -11.766  16.920  30.699  -3.743  -2.172  -0.074  C23   3ED  16  
3ED  C24   C17  C   0  1  N  N  N  -13.381  20.690  33.381  -0.060  -0.083   1.410  C24   3ED  17  
3ED  C25   C18  C   0  1  N  N  N  -12.562  19.455  33.027  -1.420  -0.410   1.332  C25   3ED  18  
3ED  C27   C19  C   0  1  N  N  N  -14.850  23.432  34.142   2.842  -0.060   1.349  C27   3ED  19  
3ED  C28   C20  C   0  1  N  N  N  -14.338  24.791  34.555   4.044  -0.780   0.726  C28   3ED  20  
3ED  N01   N1   N   0  1  N  N  N  -13.170  27.112  34.977   6.144  -1.881  -0.293  N01   3ED  21  
3ED  N10   N2   N   0  1  N  N  N  -14.312  23.051  32.752   1.982   0.442   0.268  N10   3ED  22  
3ED  N12   N3   N   0  1  N  N  N  -12.820  21.705  31.127   0.009  -0.008  -0.946  N12   3ED  23  
3ED  N15   N4   N   0  1  N  N  N  -11.893  19.371  31.730  -1.994  -0.515   0.115  N15   3ED  24  
3ED  O05   O1   O   0  1  N  N  N  -15.534  27.949  32.968   6.663   1.072   0.748  O05   3ED  25  
3ED  O26   O2   O   0  1  N  N  N  -12.474  18.611  33.758  -2.073  -0.595   2.346  O26   3ED  26  
3ED  CL18  CL1  CL  0  0  N  N  N   -8.903  19.557  32.503  -3.826   1.828   0.081  CL18  3ED  27  
3ED  CL20  CL2  CL  0  0  N  N  N   -7.007  16.927  31.812  -6.849   1.092  -0.156  CL20  3ED  28  
3ED  H1    H1   H   0  1  N  N  N  -12.670  26.799  33.007   5.912  -0.581  -1.944  H1    3ED  29  
3ED  H2    H2   H   0  1  N  N  N  -13.836  28.629  32.210   7.384   1.094  -1.215  H2    3ED  30  
3ED  H3    H3   H   0  1  N  N  N  -13.174  29.712  34.326   8.686  -1.033  -0.951  H3    3ED  31  
3ED  H4    H4   H   0  1  N  N  N  -14.803  30.296  33.845   9.194   0.203   0.225  H4    3ED  32  
3ED  H5    H5   H   0  1  N  N  N  -14.636  29.071  35.147   8.140  -1.135   0.741  H5    3ED  33  
3ED  H6    H6   H   0  1  N  N  N  -16.021  26.564  34.670   5.222   2.267  -0.191  H6    3ED  34  
3ED  H7    H7   H   0  1  N  N  N  -16.481  25.913  33.060   4.724   1.570   1.380  H7    3ED  35  
3ED  H8    H8   H   0  1  N  N  N  -13.032  25.460  32.108   4.293   1.229  -2.073  H8    3ED  36  
3ED  H9    H9   H   0  1  N  N  N  -14.507  26.268  31.477   3.434  -0.322  -1.913  H9    3ED  37  
3ED  H10   H10  H   0  1  N  N  N  -15.775  24.208  31.630   2.901   2.235  -0.331  H10   3ED  38  
3ED  H11   H11  H   0  1  N  N  N  -14.248  23.881  30.741   1.834   1.490  -1.549  H11   3ED  39  
3ED  H12   H12  H   0  1  N  N  N  -11.534  21.366  28.852  -1.189  -0.249  -3.137  H12   3ED  40  
3ED  H13   H13  H   0  1  N  N  N  -10.236  20.342  29.555  -2.317  -1.452  -2.467  H13   3ED  41  
3ED  H14   H14  H   0  1  N  N  N  -11.697  19.577  28.843  -2.735   0.277  -2.428  H14   3ED  42  
3ED  H15   H15  H   0  1  N  N  N   -8.857  14.863  30.489  -7.082  -1.742  -0.281  H15   3ED  43  
3ED  H16   H16  H   0  1  N  N  N  -11.424  14.898  29.907  -5.387  -3.526  -0.237  H16   3ED  44  
3ED  H17   H17  H   0  1  N  N  N  -12.819  16.935  30.461  -3.001  -2.956  -0.053  H17   3ED  45  
3ED  H18   H18  H   0  1  N  N  N  -13.877  20.756  34.338   0.432   0.010   2.367  H18   3ED  46  
3ED  H19   H19  H   0  1  N  N  N  -15.949  23.454  34.111   2.280  -0.757   1.970  H19   3ED  47  
3ED  H20   H20  H   0  1  N  N  N  -14.519  22.682  34.876   3.191   0.774   1.958  H20   3ED  48  
3ED  H21   H21  H   0  1  N  N  N  -13.266  24.699  34.784   3.702  -1.676   0.208  H21   3ED  49  
3ED  H22   H22  H   0  1  N  N  N  -14.881  25.101  35.460   4.747  -1.059   1.511  H22   3ED  50  
3ED  H23   H23  H   0  1  N  N  N  -12.691  26.289  35.282   6.978  -2.323  -0.651  H23   3ED  51  
3ED  H24   H24  H   0  1  N  N  N  -12.565  27.903  35.068   6.154  -1.852   0.715  H24   3ED  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3ED  C14  C13   SING  N  N   1  
3ED  C22  C23   DOUB  Y  N   2  
3ED  C22  C21   SING  Y  N   3  
3ED  C23  C16   SING  Y  N   4  
3ED  C21  C19   DOUB  Y  N   5  
3ED  C13  N12   DOUB  N  N   6  
3ED  C13  N15   SING  N  N   7  
3ED  N12  C11   SING  N  N   8  
3ED  C16  C17   DOUB  Y  N   9  
3ED  C16  N15   SING  N  N  10  
3ED  C19  C17   SING  Y  N  11  
3ED  C19  CL20  SING  N  N  12  
3ED  C09  C08   SING  N  N  13  
3ED  C09  N10   SING  N  N  14  
3ED  C17  CL18  SING  N  N  15  
3ED  N15  C25   SING  N  N  16  
3ED  C08  C07   SING  N  N  17  
3ED  C11  N10   SING  N  N  18  
3ED  C11  C24   DOUB  N  N  19  
3ED  N10  C27   SING  N  N  20  
3ED  O05  C03   SING  N  N  21  
3ED  O05  C06   SING  N  N  22  
3ED  C25  C24   SING  N  N  23  
3ED  C25  O26   DOUB  N  N  24  
3ED  C03  C02   SING  N  N  25  
3ED  C03  C04   SING  N  N  26  
3ED  C07  C06   SING  N  N  27  
3ED  C07  C02   SING  N  N  28  
3ED  C07  C28   SING  N  N  29  
3ED  C02  N01   SING  N  N  30  
3ED  C27  C28   SING  N  N  31  
3ED  C02  H1    SING  N  N  32  
3ED  C03  H2    SING  N  N  33  
3ED  C04  H3    SING  N  N  34  
3ED  C04  H4    SING  N  N  35  
3ED  C04  H5    SING  N  N  36  
3ED  C06  H6    SING  N  N  37  
3ED  C06  H7    SING  N  N  38  
3ED  C08  H8    SING  N  N  39  
3ED  C08  H9    SING  N  N  40  
3ED  C09  H10   SING  N  N  41  
3ED  C09  H11   SING  N  N  42  
3ED  C14  H12   SING  N  N  43  
3ED  C14  H13   SING  N  N  44  
3ED  C14  H14   SING  N  N  45  
3ED  C21  H15   SING  N  N  46  
3ED  C22  H16   SING  N  N  47  
3ED  C23  H17   SING  N  N  48  
3ED  C24  H18   SING  N  N  49  
3ED  C27  H19   SING  N  N  50  
3ED  C27  H20   SING  N  N  51  
3ED  C28  H21   SING  N  N  52  
3ED  C28  H22   SING  N  N  53  
3ED  N01  H23   SING  N  N  54  
3ED  N01  H24   SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3ED  SMILES            ACDLabs               12.01  "Clc1cccc(c1Cl)N1C(=O)C=C(N=C1C)N1CCC2(CC1)COC(C)C2N"  
3ED  InChI             InChI                 1.03   "InChI=1S/C20H24Cl2N4O2/c1-12-19(23)20(11-28-12)6-8-25(9-7-20)16-10-17(27)26(13(2)24-16)15-5-3-4-14(21)18(15)22/h3-5,10,12,19H,6-9,11,23H2,1-2H3/t12-,19+/m0/s1"  
3ED  InChIKey          InChI                 1.03   WYUIJDCKOPRFJO-HXPMCKFVSA-N  
3ED  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1OCC2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(Cl)c4Cl)[C@@H]1N"  
3ED  SMILES            CACTVS                3.385  "C[CH]1OCC2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(Cl)c4Cl)[CH]1N"  
3ED  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H](C2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(c4Cl)Cl)CO1)N"  
3ED  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C2(CCN(CC2)C3=CC(=O)N(C(=N3)C)c4cccc(c4Cl)Cl)CO1)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3ED  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-[(3S,4S)-4-amino-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-(2,3-dichlorophenyl)-2-methylpyrimidin-4(3H)-one"  
3ED  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[(3~{S},4~{S})-4-azanyl-3-methyl-2-oxa-8-azaspiro[4.5]decan-8-yl]-3-[2,3-bis(chloranyl)phenyl]-2-methyl-pyrimidin-4-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3ED  "Create component"  2021-07-04  RCSB  
3ED  "Initial release"   2021-10-27  RCSB  
##
