data_2MD
#

_chem_comp.id                                   2MD
_chem_comp.name                                 
;GUANYLATE-O'-PHOSPHORIC ACID
MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H28 N10 O13 P2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE DINUCLEOTIDE)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-10-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       742.573
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2MD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1TMO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2MD  PB      PB    P  0  1  N  N  S  42.894  34.969  21.395  -0.641   0.962    1.181  PB      2MD   1  
2MD  O3B     O3B   O  0  1  N  N  N  42.337  35.695  22.739   0.012   0.207   -0.081  O3B     2MD   2  
2MD  O1B     O1B   O  0  1  N  N  N  44.218  34.337  21.522   0.284   2.013    1.661  O1B     2MD   3  
2MD  O2B     O2B   O  0  1  N  N  N  42.002  33.919  20.852  -2.036   1.635    0.742  O2B     2MD   4  
2MD  O3A     O3A   O  0  1  N  N  N  43.007  36.151  20.254  -0.906  -0.098    2.363  O3A     2MD   5  
2MD  C10     C10   C  0  1  N  N  N  43.817  37.354  20.405  -1.483   0.628    3.449  C10     2MD   6  
2MD  C11     C11   C  0  1  N  N  R  43.783  38.434  19.275  -1.761  -0.327    4.611  C11     2MD   7  
2MD  O11     O11   O  0  1  N  N  N  43.130  39.438  19.980  -0.540  -0.927    5.034  O11     2MD   8  
2MD  C12     C12   C  0  1  N  N  S  45.096  38.961  18.606  -2.380   0.452    5.775  C12     2MD   9  
2MD  S12     S12   S  0  1  N  N  N  46.369  37.793  18.570  -1.210   1.709    6.360  S12     2MD  10  
2MD  C13     C13   C  0  1  N  N  R  45.532  40.281  18.762  -2.693  -0.526    6.912  C13     2MD  11  
2MD  S13     S13   S  0  1  N  N  N  47.287  40.411  18.954  -3.246   0.395    8.373  S13     2MD  12  
2MD  C14     C14   C  0  1  N  N  R  44.652  41.239  19.620  -1.429  -1.315    7.254  C14     2MD  13  
2MD  N15     N15   N  0  1  N  N  N  45.102  41.820  20.908  -0.411  -0.408    7.805  N15     2MD  14  
2MD  C16     C16   C  0  1  N  N  N  44.203  42.316  21.829   0.920  -0.876    7.885  C16     2MD  15  
2MD  C15     C15   C  0  1  N  N  N  44.612  42.998  23.037   1.863  -0.220    8.682  C15     2MD  16  
2MD  O14     O14   O  0  1  N  N  N  45.946  42.927  23.413   1.555   0.772    9.325  O14     2MD  17  
2MD  N17     N17   N  0  1  N  N  N  43.699  43.633  23.833   3.121  -0.710    8.729  N17     2MD  18  
2MD  C17     C17   C  0  1  N  N  N  42.361  43.623  23.527   3.452  -1.813    8.004  C17     2MD  19  
2MD  N16     N16   N  0  1  N  N  N  41.425  44.052  24.398   4.736  -2.292    8.064  N16     2MD  20  
2MD  N18     N18   N  0  1  N  N  N  41.944  43.069  22.358   2.569  -2.435    7.252  N18     2MD  21  
2MD  C20     C20   C  0  1  N  N  N  42.770  42.339  21.551   1.306  -2.000    7.168  C20     2MD  22  
2MD  N8      N8    N  0  1  N  N  N  42.251  41.654  20.495   0.386  -2.664    6.371  N8      2MD  23  
2MD  C7      C7    C  0  1  N  N  R  43.142  40.807  19.681  -0.851  -1.963    5.988  C7      2MD  24  
2MD  PA      PA    P  0  1  N  N  R  42.600  35.127  24.230   0.249   1.322   -1.218  PA      2MD  25  
2MD  O1A     O1A   O  0  1  N  N  N  41.889  36.101  25.094   1.160   2.368   -0.701  O1A     2MD  26  
2MD  O2A     O2A   O  0  1  N  N  N  44.034  35.010  24.546  -1.160   1.989   -1.617  O2A     2MD  27  
2MD  "O5'"   O5*   O  0  1  N  N  N  41.920  33.682  24.380   0.904   0.633   -2.517  "O5'"   2MD  28  
2MD  "C5'"   C5*   C  0  1  N  N  N  40.516  33.387  24.187   1.089   1.668   -3.485  "C5'"   2MD  29  
2MD  "C4'"   C4*   C  0  1  N  N  R  40.057  32.159  24.988   1.711   1.077   -4.751  "C4'"   2MD  30  
2MD  "O4'"   O4*   O  0  1  N  N  N  40.771  30.935  24.692   0.827   0.096   -5.318  "O4'"   2MD  31  
2MD  "C1'"   C1*   C  0  1  N  N  R  40.591  30.095  25.875   0.978   0.171   -6.752  "C1'"   2MD  32  
2MD  N9      N9    N  0  1  Y  N  N  41.492  28.897  25.914  -0.193  -0.394   -7.425  N9      2MD  33  
2MD  C4      C4    C  0  1  Y  N  N  41.184  27.578  25.622  -0.212  -0.982   -8.660  C4      2MD  34  
2MD  N3      N3    N  0  1  N  N  N  39.936  27.085  25.287   0.719  -1.235   -9.587  N3      2MD  35  
2MD  C2      C2    C  0  1  N  N  N  39.870  25.718  25.287   0.410  -1.837  -10.714  C2      2MD  36  
2MD  N2      N2    N  0  1  N  N  N  38.706  25.111  25.075   1.398  -2.072  -11.637  N2      2MD  37  
2MD  N1      N1    N  0  1  N  N  N  40.996  24.904  25.445  -0.863  -2.236  -10.992  N1      2MD  38  
2MD  C6      C6    C  0  1  N  N  N  42.324  25.385  25.551  -1.856  -2.018  -10.102  C6      2MD  39  
2MD  O6      O6    O  0  1  N  N  N  43.257  24.585  25.396  -2.998  -2.371  -10.342  O6      2MD  40  
2MD  C5      C5    C  0  1  Y  N  N  42.364  26.839  25.750  -1.537  -1.372   -8.885  C5      2MD  41  
2MD  N7      N7    N  0  1  Y  N  N  43.419  27.683  26.095  -2.255  -1.002   -7.796  N7      2MD  42  
2MD  C8      C8    C  0  1  Y  N  N  42.846  28.867  26.188  -1.467  -0.427   -6.936  C8      2MD  43  
2MD  "C2'"   C2*   C  0  1  N  N  R  40.843  31.100  27.010   1.086   1.693   -7.025  "C2'"   2MD  44  
2MD  "O2'"   O2*   O  0  1  N  N  N  40.265  30.698  28.249   1.786   1.944   -8.245  "O2'"   2MD  45  
2MD  "C3'"   C3*   C  0  1  N  N  S  40.150  32.390  26.514   1.908   2.184   -5.804  "C3'"   2MD  46  
2MD  "O3'"   O3*   O  0  1  N  N  N  38.821  32.470  27.046   3.288   2.315   -6.151  "O3'"   2MD  47  
2MD  HO2B    BHO2  H  0  0  N  N  N  42.327  33.494  20.066  -2.608   0.918    0.437  HO2B    2MD  48  
2MD  H101    1H10  H  0  0  N  N  N  43.561  37.840  21.375  -2.417   1.086    3.124  H101    2MD  49  
2MD  H102    2H10  H  0  0  N  N  N  44.875  37.054  20.584  -0.791   1.405    3.775  H102    2MD  50  
2MD  H11     H11   H  0  1  N  N  N  43.331  38.008  18.348  -2.454  -1.103    4.285  H11     2MD  51  
2MD  H12     H12   H  0  1  N  N  N  44.681  39.097  17.580  -3.300   0.934    5.444  H12     2MD  52  
2MD  HS2     HS2   H  0  1  N  N  N  47.166  38.112  18.163  -1.076   2.442    5.240  HS2     2MD  53  
2MD  H13     H13   H  0  1  N  N  N  45.323  40.744  17.769  -3.478  -1.213    6.596  H13     2MD  54  
2MD  HS3     HS3   H  0  1  N  N  N  47.583  41.307  19.059  -4.336   1.001    7.868  HS3     2MD  55  
2MD  H14     H14   H  0  1  N  N  N  44.818  42.135  18.977  -1.667  -2.088    7.986  H14     2MD  56  
2MD  HNF     HNF   H  0  1  N  N  N  45.777  42.556  20.701  -0.645   0.483    8.105  HNF     2MD  57  
2MD  HNH     HNH   H  0  1  N  N  N  44.021  44.121  24.668   3.791  -0.271    9.276  HNH     2MD  58  
2MD  HNG1    1HNG  H  0  0  N  N  N  40.430  44.044  24.170   4.984  -3.080    7.555  HNG1    2MD  59  
2MD  HNG2    2HNG  H  0  0  N  N  N  41.672  45.001  24.677   5.397  -1.841    8.611  HNG2    2MD  60  
2MD  HN8     HN8   H  0  1  N  N  N  41.773  42.312  19.880   0.557  -3.570    6.066  HN8     2MD  61  
2MD  H7      H7    H  0  1  N  N  N  42.666  40.981  18.687  -1.560  -2.669    5.556  H7      2MD  62  
2MD  HO2A    AHO2  H  0  0  N  N  N  44.188  34.676  25.421  -1.723   1.276   -1.948  HO2A    2MD  63  
2MD  "H5'1"  1H5*  H  0  0  N  N  N  39.883  34.275  24.418   0.124   2.114   -3.728  "H5'1"  2MD  64  
2MD  "H5'2"  2H5*  H  0  0  N  N  N  40.275  33.272  23.104   1.750   2.433   -3.077  "H5'2"  2MD  65  
2MD  "H4'"   H4*   H  0  1  N  N  N  38.998  32.030  24.663   2.671   0.618   -4.513  "H4'"   2MD  66  
2MD  "H1'"   H1*   H  0  1  N  N  N  39.588  29.609  25.925   1.886  -0.340   -7.070  "H1'"   2MD  67  
2MD  HN21    1HN2  H  0  0  N  N  N  38.656  24.092  25.075   2.309  -1.794  -11.453  HN21    2MD  68  
2MD  HN22    2HN2  H  0  0  N  N  N  38.318  25.453  24.195   1.186  -2.515  -12.473  HN22    2MD  69  
2MD  HN1     HN1   H  0  1  N  N  N  40.838  23.897  25.485  -1.057  -2.678  -11.833  HN1     2MD  70  
2MD  H8      H8    H  0  1  N  N  N  43.443  29.750  26.468  -1.774  -0.034   -5.978  H8      2MD  71  
2MD  "H2'"   H2*   H  0  1  N  N  N  41.933  31.209  27.213   0.099   2.156   -7.043  "H2'"   2MD  72  
2MD  "HO2'"  *HO2  H  0  0  N  N  N  40.420  31.319  28.950   1.819   2.904   -8.356  "HO2'"  2MD  73  
2MD  "H3'"   H3*   H  0  1  N  N  N  40.689  33.319  26.809   1.516   3.133   -5.438  "H3'"   2MD  74  
2MD  "HO3'"  *HO3  H  0  0  N  N  N  38.878  32.611  27.983   3.338   2.977   -6.854  "HO3'"  2MD  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2MD  PB     O3B     SING  N  N   1  
2MD  PB     O1B     DOUB  N  N   2  
2MD  PB     O2B     SING  N  N   3  
2MD  PB     O3A     SING  N  N   4  
2MD  O3B    PA      SING  N  N   5  
2MD  O2B    HO2B    SING  N  N   6  
2MD  O3A    C10     SING  N  N   7  
2MD  C10    C11     SING  N  N   8  
2MD  C10    H101    SING  N  N   9  
2MD  C10    H102    SING  N  N  10  
2MD  C11    O11     SING  N  N  11  
2MD  C11    C12     SING  N  N  12  
2MD  C11    H11     SING  N  N  13  
2MD  O11    C7      SING  N  N  14  
2MD  C12    S12     SING  N  N  15  
2MD  C12    C13     SING  N  N  16  
2MD  C12    H12     SING  N  N  17  
2MD  S12    HS2     SING  N  N  18  
2MD  C13    S13     SING  N  N  19  
2MD  C13    C14     SING  N  N  20  
2MD  C13    H13     SING  N  N  21  
2MD  S13    HS3     SING  N  N  22  
2MD  C14    N15     SING  N  N  23  
2MD  C14    C7      SING  N  N  24  
2MD  C14    H14     SING  N  N  25  
2MD  N15    C16     SING  N  N  26  
2MD  N15    HNF     SING  N  N  27  
2MD  C16    C15     SING  N  N  28  
2MD  C16    C20     DOUB  N  N  29  
2MD  C15    O14     DOUB  N  N  30  
2MD  C15    N17     SING  N  N  31  
2MD  N17    C17     SING  N  N  32  
2MD  N17    HNH     SING  N  N  33  
2MD  C17    N16     SING  N  N  34  
2MD  C17    N18     DOUB  N  N  35  
2MD  N16    HNG1    SING  N  N  36  
2MD  N16    HNG2    SING  N  N  37  
2MD  N18    C20     SING  N  N  38  
2MD  C20    N8      SING  N  N  39  
2MD  N8     C7      SING  N  N  40  
2MD  N8     HN8     SING  N  N  41  
2MD  C7     H7      SING  N  N  42  
2MD  PA     O1A     DOUB  N  N  43  
2MD  PA     O2A     SING  N  N  44  
2MD  PA     "O5'"   SING  N  N  45  
2MD  O2A    HO2A    SING  N  N  46  
2MD  "O5'"  "C5'"   SING  N  N  47  
2MD  "C5'"  "C4'"   SING  N  N  48  
2MD  "C5'"  "H5'1"  SING  N  N  49  
2MD  "C5'"  "H5'2"  SING  N  N  50  
2MD  "C4'"  "O4'"   SING  N  N  51  
2MD  "C4'"  "C3'"   SING  N  N  52  
2MD  "C4'"  "H4'"   SING  N  N  53  
2MD  "O4'"  "C1'"   SING  N  N  54  
2MD  "C1'"  N9      SING  N  N  55  
2MD  "C1'"  "C2'"   SING  N  N  56  
2MD  "C1'"  "H1'"   SING  N  N  57  
2MD  N9     C4      SING  Y  N  58  
2MD  N9     C8      SING  Y  N  59  
2MD  C4     N3      SING  N  N  60  
2MD  C4     C5      DOUB  Y  N  61  
2MD  N3     C2      DOUB  N  N  62  
2MD  C2     N2      SING  N  N  63  
2MD  C2     N1      SING  N  N  64  
2MD  N2     HN21    SING  N  N  65  
2MD  N2     HN22    SING  N  N  66  
2MD  N1     C6      SING  N  N  67  
2MD  N1     HN1     SING  N  N  68  
2MD  C6     O6      DOUB  N  N  69  
2MD  C6     C5      SING  N  N  70  
2MD  C5     N7      SING  Y  N  71  
2MD  N7     C8      DOUB  Y  N  72  
2MD  C8     H8      SING  N  N  73  
2MD  "C2'"  "O2'"   SING  N  N  74  
2MD  "C2'"  "C3'"   SING  N  N  75  
2MD  "C2'"  "H2'"   SING  N  N  76  
2MD  "O2'"  "HO2'"  SING  N  N  77  
2MD  "C3'"  "O3'"   SING  N  N  78  
2MD  "C3'"  "H3'"   SING  N  N  79  
2MD  "O3'"  "HO3'"  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2MD  SMILES            ACDLabs               10.04  "O=C1C=2NC3C(S)C(S)C(OC3NC=2N=C(N)N1)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c5N=C(N)NC4=O)C(O)C6O"  
2MD  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC2=C(N[C@H]3[C@@H](S)[C@@H](S)[C@@H](CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6C(=O)NC(=Nc56)N)O[C@H]3N2)C(=O)N1"  
2MD  SMILES            CACTVS                3.341  "NC1=NC2=C(N[CH]3[CH](S)[CH](S)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)O[CH]3N2)C(=O)N1"  
2MD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@@H]([C@@H]([C@H]5[C@@H](O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N"  
2MD  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C5C(O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N"  
2MD  InChI             InChI                 1.03   "InChI=1S/C20H28N10O13P2S2/c21-19-26-13-7(15(33)28-19)24-6-12(47)11(46)5(41-17(6)25-13)2-40-45(37,38)43-44(35,36)39-1-4-9(31)10(32)18(42-4)30-3-23-8-14(30)27-20(22)29-16(8)34/h3-6,9-12,17-18,24,31-32,46-47H,1-2H2,(H,35,36)(H,37,38)(H3,22,27,29,34)(H4,21,25,26,28,33)/t4-,5-,6+,9-,10-,11+,12-,17-,18-/m1/s1"  
2MD  InChIKey          InChI                 1.03   YDYCAANTTOPADF-JKOCJXFLSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2MD  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(R)-{[(S)-{[(5aR,6R,7S,8R,9aR)-2-amino-4-oxo-6,7-disulfanyl-3,5,5a,6,7,8,9a,10-octahydro-4H-pyrano[3,2-g]pteridin-8-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine"  
2MD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(5aR,6R,7S,8R,9aR)-2-amino-4-oxo-6,7-bis-sulfanyl-3,5,5a,6,7,8,9a,10-octahydropyrano[5,6-g]pteridin-8-yl]methyl [[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2MD  "Create component"   1999-10-08  RCSB  
2MD  "Modify descriptor"  2011-06-04  RCSB  
2MD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2MD
_pdbx_chem_comp_synonyms.name        "MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE DINUCLEOTIDE)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
