data_2BD
# 
_chem_comp.id                                    2BD 
_chem_comp.name                                  
;N1-(1-HYDROXY-3-BUTEN-2(S)-YL)-2'-DEOXYINOSINE MONO PHOSPHORIC ACID
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H19 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DI 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-08-02 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        402.296 
_chem_comp.one_letter_code                       I 
_chem_comp.three_letter_code                     2BD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1U6N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2BD P      P    P 0 1 N N N -1.600 9.651  14.492 -0.770 0.094  4.765  P      2BD 1  
2BD OP1    O1P  O 0 1 N N N -3.044 9.508  14.202 -2.269 0.097  4.837  OP1    2BD 2  
2BD OP2    O2P  O 0 1 N N N -0.889 10.949 14.508 -0.066 1.535  4.976  OP2    2BD 3  
2BD OP3    O3P  O 0 1 N Y N ?      ?      ?      -0.035 -0.843 5.859  OP3    2BD 4  
2BD "O5'"  O5*  O 0 1 N N N -0.606 8.405  14.623 -0.153 -0.433 3.364  "O5'"  2BD 5  
2BD "C5'"  C5*  C 0 1 N N N -1.271 7.152  14.346 1.256  -0.466 3.216  "C5'"  2BD 6  
2BD "C4'"  C4*  C 0 1 N N R -1.854 6.964  15.695 1.587  -0.994 1.827  "C4'"  2BD 7  
2BD "O4'"  O4*  O 0 1 N N N -1.385 5.845  16.513 1.032  -0.080 0.857  "O4'"  2BD 8  
2BD "C1'"  C1*  C 0 1 N N R -0.899 6.360  17.861 2.110  0.511  0.111  "C1'"  2BD 9  
2BD O6     O6   O 0 1 N N N 4.675  4.396  18.058 1.437  6.069  -1.874 O6     2BD 10 
2BD C6     C6   C 0 1 N N N 3.958  5.373  17.922 1.866  4.930  -2.017 C6     2BD 11 
2BD C5     C5   C 0 1 Y N N 2.591  5.136  18.063 1.671  3.896  -1.032 C5     2BD 12 
2BD N7     N7   N 0 1 Y N N 1.895  4.014  18.203 1.022  3.980  0.166  N7     2BD 13 
2BD C8     C8   C 0 1 Y N N 0.610  4.349  18.249 1.129  2.767  0.672  C8     2BD 14 
2BD N9     N9   N 0 1 Y N N 0.445  5.629  18.143 1.820  1.916  -0.155 N9     2BD 15 
2BD C4     C4   C 0 1 Y N N 1.686  6.177  18.045 2.173  2.637  -1.257 C4     2BD 16 
2BD N3     N3   N 0 1 N N N 2.129  7.434  17.939 2.864  2.179  -2.322 N3     2BD 17 
2BD C2     C2   C 0 1 N N N 3.405  7.751  17.798 3.045  3.112  -3.213 C2     2BD 18 
2BD N1     N1   N 0 1 N N N 4.448  6.757  17.695 2.599  4.447  -3.126 N1     2BD 19 
2BD CAN    CAN  C 0 1 N N S 6.039  7.323  17.511 2.903  5.359  -4.215 CAN    2BD 20 
2BD CAL    CAL  C 0 1 N N N 7.038  6.309  17.117 4.397  5.454  -4.329 CAL    2BD 21 
2BD CAM    CAM  C 0 1 N N N 8.089  6.507  17.755 5.091  6.577  -4.108 CAM    2BD 22 
2BD CAO    CAO  C 0 1 N N N 5.661  8.217  16.221 2.277  4.878  -5.523 CAO    2BD 23 
2BD OAP    OAP  O 0 1 N N N 5.622  9.592  15.805 0.864  4.804  -5.367 OAP    2BD 24 
2BD "C2'"  C2*  C 0 1 N N N -0.495 7.746  17.557 3.381  0.276  0.915  "C2'"  2BD 25 
2BD "C3'"  C3*  C 0 1 N N S -1.384 8.112  16.505 3.088  -1.057 1.564  "C3'"  2BD 26 
2BD "O3'"  O3*  O 0 1 N N N -2.015 9.349  16.220 3.364  -2.089 0.619  "O3'"  2BD 27 
2BD HOP2   2HOP H 0 0 N N N 0.038  11.040 14.694 -0.337 2.088  5.739  HOP2   2BD 28 
2BD HOP3   3HOP H 0 0 N N N 0.927  0.091  0.186  -0.311 -0.781 6.799  HOP3   2BD 29 
2BD "H5'"  1H5* H 0 1 N N N -0.602 6.318  14.165 1.653  0.542  3.338  "H5'"  2BD 30 
2BD "H5''" 2H5* H 0 0 N N N -2.048 7.299  13.537 1.681  -1.122 3.977  "H5''" 2BD 31 
2BD "H4'"  H4*  H 0 1 N N N -2.953 6.981  15.620 1.104  -1.966 1.683  "H4'"  2BD 32 
2BD "H1'"  H1*  H 0 1 N N N -1.706 6.218  18.391 2.154  0.023  -0.868 "H1'"  2BD 33 
2BD H8     H8   H 0 1 N N N -0.150 3.680  18.269 0.732  2.447  1.626  H8     2BD 34 
2BD H2     H2   H 0 1 N N N 3.653  8.783  17.669 3.596  2.888  -4.140 H2     2BD 35 
2BD HAN    HAN  H 0 1 N N N 6.482  8.029  17.995 2.463  6.322  -3.930 HAN    2BD 36 
2BD HAL2   2HAL H 0 0 N N N 6.646  5.318  17.345 4.942  4.557  -4.613 HAL2   2BD 37 
2BD HAM1   1HAM H 0 0 N N N 8.276  5.543  18.196 6.171  6.604  -4.200 HAM1   2BD 38 
2BD HAM2   2HAM H 0 0 N N N 8.978  6.813  17.307 4.580  7.492  -3.828 HAM2   2BD 39 
2BD HAO1   1HAO H 0 0 N N N 4.783  8.582  16.336 2.646  3.887  -5.811 HAO1   2BD 40 
2BD HAO2   2HAO H 0 0 N N N 6.627  8.856  16.170 2.485  5.581  -6.337 HAO2   2BD 41 
2BD HAP    HAP  H 0 1 N N N 4.694  9.834  15.496 0.701  4.393  -4.503 HAP    2BD 42 
2BD "H2'"  1H2* H 0 1 N N N 0.518  7.791  17.219 3.498  1.050  1.683  "H2'"  2BD 43 
2BD "H2''" 2H2* H 0 0 N N N -0.633 8.363  18.429 4.270  0.278  0.277  "H2''" 2BD 44 
2BD "H3'"  H3*  H 0 1 N N N -0.489 8.307  15.867 3.687  -1.252 2.457  "H3'"  2BD 45 
2BD "HO3'" H3T  H 0 0 N Y N -1.713 10.085 16.739 2.519  -2.525 0.432  "HO3'" 2BD 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2BD P     OP1    DOUB N N 1  
2BD P     OP2    SING N N 2  
2BD P     OP3    SING N N 3  
2BD P     "O5'"  SING N N 4  
2BD OP2   HOP2   SING N N 5  
2BD OP3   HOP3   SING N N 6  
2BD "O5'" "C5'"  SING N N 7  
2BD "C5'" "C4'"  SING N N 8  
2BD "C5'" "H5'"  SING N N 9  
2BD "C5'" "H5''" SING N N 10 
2BD "C4'" "O4'"  SING N N 11 
2BD "C4'" "C3'"  SING N N 12 
2BD "C4'" "H4'"  SING N N 13 
2BD "O4'" "C1'"  SING N N 14 
2BD "C1'" N9     SING N N 15 
2BD "C1'" "C2'"  SING N N 16 
2BD "C1'" "H1'"  SING N N 17 
2BD O6    C6     DOUB N N 18 
2BD C6    C5     SING N N 19 
2BD C6    N1     SING N N 20 
2BD C5    N7     SING Y N 21 
2BD C5    C4     DOUB Y N 22 
2BD N7    C8     DOUB Y N 23 
2BD C8    N9     SING Y N 24 
2BD C8    H8     SING N N 25 
2BD N9    C4     SING Y N 26 
2BD C4    N3     SING N N 27 
2BD N3    C2     DOUB N N 28 
2BD C2    N1     SING N N 29 
2BD C2    H2     SING N N 30 
2BD N1    CAN    SING N N 31 
2BD CAN   CAL    SING N N 32 
2BD CAN   CAO    SING N N 33 
2BD CAN   HAN    SING N N 34 
2BD CAL   CAM    DOUB N N 35 
2BD CAL   HAL2   SING N N 36 
2BD CAM   HAM1   SING N N 37 
2BD CAM   HAM2   SING N N 38 
2BD CAO   OAP    SING N N 39 
2BD CAO   HAO1   SING N N 40 
2BD CAO   HAO2   SING N N 41 
2BD OAP   HAP    SING N N 42 
2BD "C2'" "C3'"  SING N N 43 
2BD "C2'" "H2'"  SING N N 44 
2BD "C2'" "H2''" SING N N 45 
2BD "C3'" "O3'"  SING N N 46 
2BD "C3'" "H3'"  SING N N 47 
2BD "O3'" "HO3'" SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2BD SMILES           ACDLabs              10.04 "O=C1c2ncn(c2N=CN1C(\C=C)CO)C3OC(C(O)C3)COP(=O)(O)O"                                                                                                               
2BD SMILES_CANONICAL CACTVS               3.341 "OC[C@H](C=C)N1C=Nc2n(cnc2C1=O)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                             
2BD SMILES           CACTVS               3.341 "OC[CH](C=C)N1C=Nc2n(cnc2C1=O)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                                  
2BD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C=C[C@@H](CO)N1C=Nc2c(ncn2[C@H]3CC([C@H](O3)COP(=O)(O)O)O)C1=O"                                                                                                   
2BD SMILES           "OpenEye OEToolkits" 1.5.0 "C=CC(CO)N1C=Nc2c(ncn2C3CC(C(O3)COP(=O)(O)O)O)C1=O"                                                                                                                
2BD InChI            InChI                1.03  "InChI=1S/C14H19N4O8P/c1-2-8(4-19)17-7-16-13-12(14(17)21)15-6-18(13)11-3-9(20)10(26-11)5-25-27(22,23)24/h2,6-11,19-20H,1,3-5H2,(H2,22,23,24)/t8-,9-,10+,11+/m0/s1" 
2BD InChIKey         InChI                1.03  LXPLTWVTQXOUTK-UKKRHICBSA-N                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2BD "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-1-[(1S)-1-(hydroxymethyl)prop-2-en-1-yl]inosine 5'-(dihydrogen phosphate)
;
2BD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,5R)-3-hydroxy-5-[1-[(2S)-1-hydroxybut-3-en-2-yl]-6-oxo-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2BD "Create component"  2004-08-02 RCSB 
2BD "Modify descriptor" 2011-06-04 RCSB 
# 
