data_18D
#

_chem_comp.id                                   18D
_chem_comp.name                                 "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H21 N O9"
_chem_comp.mon_nstd_parent_comp_id              SIA
_chem_comp.pdbx_synonyms                        
;3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-04-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       323.296
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    18D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WGT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  18D  "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid"  PDB  ?  
2  18D  "3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid"        PDB  ?  
3  18D  "3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
18D  C1    C1    C  0  1  N  N  N  57.040  45.770  68.615  -1.463   2.439   0.861  C1    18D   1  
18D  C2    C2    C  0  1  N  N  R  55.788  46.427  68.077  -1.203   2.083  -0.581  C2    18D   2  
18D  C3    C3    C  0  1  N  N  N  55.383  45.841  66.715   0.221   2.498  -0.960  C3    18D   3  
18D  C4    C4    C  0  1  N  N  S  54.679  44.491  66.799   1.218   1.715  -0.101  C4    18D   4  
18D  C5    C5    C  0  1  N  N  R  53.562  44.580  67.832   0.978   0.215  -0.297  C5    18D   5  
18D  C6    C6    C  0  1  N  N  R  54.202  44.953  69.170  -0.475  -0.112   0.057  C6    18D   6  
18D  C7    C7    C  0  1  N  N  R  53.249  44.873  70.361  -0.740  -1.597  -0.194  C7    18D   7  
18D  C8    C8    C  0  1  N  N  R  53.894  45.377  71.651  -2.222  -1.898   0.040  C8    18D   8  
18D  C9    C9    C  0  1  N  N  N  53.012  45.087  72.862  -2.487  -3.384  -0.212  C9    18D   9  
18D  C10   C10   C  0  1  N  N  N  51.638  43.071  67.662   3.131  -0.824   0.172  C10   18D  10  
18D  C11   C11   C  0  1  N  N  N  51.098  41.682  67.903   4.056  -1.604   1.070  C11   18D  11  
18D  N5    N5    N  0  1  N  N  N  52.919  43.277  67.991   1.877  -0.544   0.576  N5    18D  12  
18D  O1B   O1    O  0  1  N  N  N  57.991  45.595  67.852  -0.641   1.990   1.822  O1B   18D  13  
18D  O1A   O3    O  0  1  N  N  N  57.086  45.425  69.816  -2.409   3.133   1.151  O1A   18D  14  
18D  O2    O2    O  0  1  N  Y  N  56.058  47.817  67.888  -2.138   2.768  -1.417  O2    18D  15  
18D  O4    O4    O  0  1  N  N  N  54.165  44.176  65.499   2.551   2.041  -0.498  O4    18D  16  
18D  O6    O6    O  0  1  N  N  N  54.736  46.280  69.044  -1.350   0.673  -0.757  O6    18D  17  
18D  O7    O7    O  0  1  N  N  N  52.093  45.659  70.082  -0.396  -1.921  -1.543  O7    18D  18  
18D  O8    O8    O  0  1  N  N  N  55.183  44.782  71.845  -2.567  -1.574   1.388  O8    18D  19  
18D  O9    O9    O  0  1  N  N  N  52.807  43.676  72.995  -3.889  -3.642  -0.107  O9    18D  20  
18D  C22   C22   C  0  1  N  N  N  50.022  41.312  66.906   5.409  -1.784   0.378  C22   18D  21  
18D  O10   O10   O  0  1  N  N  N  50.933  43.944  67.183   3.516  -0.448  -0.915  O10   18D  22  
18D  HO2   H2    H  0  1  N  Y  N  56.118  48.246  68.733  -3.062   2.553  -1.232  HO2   18D  23  
18D  H32   H31C  H  0  1  N  N  N  54.696  46.551  66.232   0.396   2.277  -2.013  H32   18D  24  
18D  H31   H32C  H  0  1  N  N  N  56.312  45.681  66.148   0.348   3.566  -0.784  H31   18D  25  
18D  H4    H4    H  0  1  N  N  N  55.371  43.695  67.112   1.077   1.974   0.949  H4    18D  26  
18D  HO4   HA    H  0  1  N  Y  N  53.218  44.106  65.541   2.771   2.979  -0.407  HO4   18D  27  
18D  H5    H5    H  0  1  N  N  N  52.815  45.321  67.511   1.169  -0.052  -1.337  H5    18D  28  
18D  H6    H6    H  0  1  N  N  N  54.989  44.216  69.385  -0.654   0.117   1.107  H6    18D  29  
18D  H7    H7    H  0  1  N  N  N  52.983  43.816  70.509  -0.136  -2.195   0.488  H7    18D  30  
18D  H8    H8    H  0  1  N  N  N  54.011  46.466  71.552  -2.826  -1.301  -0.643  H8    18D  31  
18D  HO7   HB    H  0  1  N  Y  N  51.626  45.834  70.890  -0.896  -1.426  -2.206  HO7   18D  32  
18D  H92   H91C  H  0  1  N  N  N  53.504  45.469  73.769  -2.142  -3.651  -1.211  H92   18D  33  
18D  H91   H92C  H  0  1  N  N  N  52.039  45.581  72.726  -1.952  -3.978   0.529  H91   18D  34  
18D  HO8   HC    H  0  1  N  Y  N  55.602  44.650  71.002  -2.067  -2.069   2.052  HO8   18D  35  
18D  HO9   H9    H  0  1  N  Y  N  52.762  43.279  72.133  -4.130  -4.567  -0.255  HO9   18D  36  
18D  HN5   HD    H  0  1  N  N  N  53.453  42.515  68.357   1.569  -0.844   1.446  HN5   18D  37  
18D  H111  H111  H  0  0  N  N  N  51.925  40.962  67.811   4.196  -1.063   2.006  H111  18D  38  
18D  H113  H112  H  0  0  N  N  N  50.654  41.658  68.909   3.621  -2.582   1.278  H113  18D  39  
18D  H221  H221  H  0  0  N  N  N  49.056  41.222  67.425   5.269  -2.325  -0.558  H221  18D  40  
18D  H222  H222  H  0  0  N  N  N  49.953  42.093  66.135   5.843  -0.806   0.171  H222  18D  41  
18D  H223  H223  H  0  0  N  N  N  50.275  40.351  66.434   6.077  -2.348   1.028  H223  18D  42  
18D  HO1B  H1    H  0  0  N  N  N  58.704  45.180  68.324  -0.848   2.244   2.731  HO1B  18D  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
18D  O1A  C1    DOUB  N  N   1  
18D  C1   O1B   SING  N  N   2  
18D  C1   C2    SING  N  N   3  
18D  C2   O2    SING  N  N   4  
18D  C2   C3    SING  N  N   5  
18D  C2   O6    SING  N  N   6  
18D  C3   C4    SING  N  N   7  
18D  C4   O4    SING  N  N   8  
18D  C4   C5    SING  N  N   9  
18D  O6   C6    SING  N  N  10  
18D  C6   C7    SING  N  N  11  
18D  C6   C5    SING  N  N  12  
18D  C7   C8    SING  N  N  13  
18D  C7   O7    SING  N  N  14  
18D  C8   C9    SING  N  N  15  
18D  C8   O8    SING  N  N  16  
18D  C9   O9    SING  N  N  17  
18D  C5   N5    SING  N  N  18  
18D  N5   C10   SING  N  N  19  
18D  C10  O10   DOUB  N  N  20  
18D  C10  C11   SING  N  N  21  
18D  C11  C22   SING  N  N  22  
18D  O2   HO2   SING  N  N  23  
18D  C3   H32   SING  N  N  24  
18D  C3   H31   SING  N  N  25  
18D  C4   H4    SING  N  N  26  
18D  O4   HO4   SING  N  N  27  
18D  C5   H5    SING  N  N  28  
18D  C6   H6    SING  N  N  29  
18D  C7   H7    SING  N  N  30  
18D  C8   H8    SING  N  N  31  
18D  O7   HO7   SING  N  N  32  
18D  C9   H92   SING  N  N  33  
18D  C9   H91   SING  N  N  34  
18D  O8   HO8   SING  N  N  35  
18D  O9   HO9   SING  N  N  36  
18D  N5   HN5   SING  N  N  37  
18D  C11  H111  SING  N  N  38  
18D  C11  H113  SING  N  N  39  
18D  C22  H221  SING  N  N  40  
18D  C22  H222  SING  N  N  41  
18D  C22  H223  SING  N  N  42  
18D  O1B  HO1B  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
18D  SMILES            ACDLabs               10.04  "O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C1"  
18D  SMILES_CANONICAL  CACTVS                3.352  "CCC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O"  
18D  SMILES            CACTVS                3.352  "CCC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O"  
18D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O"  
18D  SMILES            "OpenEye OEToolkits"  1.6.1  "CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O"  
18D  InChI             InChI                 1.03   "InChI=1S/C12H21NO9/c1-2-7(17)13-8-5(15)3-12(21,11(19)20)22-10(8)9(18)6(16)4-14/h5-6,8-10,14-16,18,21H,2-4H2,1H3,(H,13,17)(H,19,20)/t5-,6+,8+,9+,10+,12+/m0/s1"  
18D  InChIKey          InChI                 1.03   QZBCMZXFDLYCRV-BLMTXZDNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
18D  "SYSTEMATIC NAME"  ACDLabs               10.04  "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"  
18D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R,4S,5R,6R)-2,4-dihydroxy-5-(propanoylamino)-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid"  
#
_pdbx_chem_comp_related.comp_id            18D
_pdbx_chem_comp_related.related_comp_id    SIA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  18D  C1    SIA  C1    "Carbohydrate core"  
 2  18D  C10   SIA  C10   "Carbohydrate core"  
 3  18D  C11   SIA  C11   "Carbohydrate core"  
 4  18D  C2    SIA  C2    "Carbohydrate core"  
 5  18D  C3    SIA  C3    "Carbohydrate core"  
 6  18D  C4    SIA  C4    "Carbohydrate core"  
 7  18D  C5    SIA  C5    "Carbohydrate core"  
 8  18D  C6    SIA  C6    "Carbohydrate core"  
 9  18D  C7    SIA  C7    "Carbohydrate core"  
10  18D  C8    SIA  C8    "Carbohydrate core"  
11  18D  C9    SIA  C9    "Carbohydrate core"  
12  18D  N5    SIA  N5    "Carbohydrate core"  
13  18D  O1B   SIA  O1B   "Carbohydrate core"  
14  18D  O10   SIA  O10   "Carbohydrate core"  
15  18D  O2    SIA  O2    "Carbohydrate core"  
16  18D  O1A   SIA  O1A   "Carbohydrate core"  
17  18D  O4    SIA  O4    "Carbohydrate core"  
18  18D  O6    SIA  O6    "Carbohydrate core"  
19  18D  O7    SIA  O7    "Carbohydrate core"  
20  18D  O8    SIA  O8    "Carbohydrate core"  
21  18D  O9    SIA  O9    "Carbohydrate core"  
22  18D  HO1B  SIA  HO1B  "Carbohydrate core"  
23  18D  H111  SIA  H111  "Carbohydrate core"  
24  18D  H113  SIA  H113  "Carbohydrate core"  
25  18D  HO2   SIA  HO2   "Carbohydrate core"  
26  18D  H32   SIA  H32   "Carbohydrate core"  
27  18D  H31   SIA  H31   "Carbohydrate core"  
28  18D  H4    SIA  H4    "Carbohydrate core"  
29  18D  H5    SIA  H5    "Carbohydrate core"  
30  18D  H6    SIA  H6    "Carbohydrate core"  
31  18D  H7    SIA  H7    "Carbohydrate core"  
32  18D  H8    SIA  H8    "Carbohydrate core"  
33  18D  HO9   SIA  HO9   "Carbohydrate core"  
34  18D  H92   SIA  H92   "Carbohydrate core"  
35  18D  H91   SIA  H91   "Carbohydrate core"  
36  18D  HO4   SIA  HO4   "Carbohydrate core"  
37  18D  HO7   SIA  HO7   "Carbohydrate core"  
38  18D  HO8   SIA  HO8   "Carbohydrate core"  
39  18D  HN5   SIA  HN5   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
18D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
18D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
18D  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
18D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
18D  "Create component"          2009-04-27  EBI   
18D  "Modify descriptor"         2011-06-04  RCSB  
18D  "Other modification"        2020-07-03  RCSB  
18D  "Modify parent residue"     2020-07-17  RCSB  
18D  "Modify name"               2020-07-17  RCSB  
18D  "Modify synonyms"           2020-07-17  RCSB  
18D  "Modify internal type"      2020-07-17  RCSB  
18D  "Modify linking type"       2020-07-17  RCSB  
18D  "Modify atom id"            2020-07-17  RCSB  
18D  "Modify component atom id"  2020-07-17  RCSB  
18D  "Modify leaving atom flag"  2020-07-17  RCSB  
##
