data_ZBC
# 
_chem_comp.id                                    ZBC 
_chem_comp.name                                  "(2S)-3-(4-AMINO-5-BROMO-2-OXOPYRIMIDIN-1(2H)-YL)-2-HYDROXYPROPYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C7 H11 Br N3 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-07 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        344.057 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     ZBC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WNA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZBC P    P    P  0 1 N N N 36.105 45.461 8.635  5.209  0.595  -0.131 P    ZBC 1  
ZBC BR5  BR5  BR 0 0 N N N 41.962 37.723 8.795  -4.234 1.581  -0.024 BR5  ZBC 2  
ZBC C5   C5   C  0 1 N N N 40.220 38.390 9.078  -3.049 0.112  0.087  C5   ZBC 3  
ZBC C4   C4   C  0 1 N N N 39.158 37.503 9.389  -3.449 -1.166 -0.356 C4   ZBC 4  
ZBC N4   N4   N  0 1 N N N 39.353 36.188 9.474  -4.708 -1.356 -0.877 N4   ZBC 5  
ZBC N3   N3   N  0 1 N N N 37.926 37.974 9.616  -2.603 -2.185 -0.270 N3   ZBC 6  
ZBC C2   C2   C  0 1 N N N 37.675 39.302 9.550  -1.381 -2.013 0.232  C2   ZBC 7  
ZBC O2   O2   O  0 1 N N N 36.541 39.764 9.751  -0.622 -2.966 0.300  O2   ZBC 8  
ZBC C6   C6   C  0 1 N N N 39.967 39.696 9.009  -1.801 0.271  0.590  C6   ZBC 9  
ZBC N1   N1   N  0 1 N N N 38.714 40.174 9.237  -0.970 -0.807 0.664  N1   ZBC 10 
ZBC C1G  C1G  C  0 1 N N N 38.464 41.623 9.174  0.380  -0.650 1.211  C1G  ZBC 11 
ZBC C2G  C2G  C  0 1 N N S 37.732 42.063 7.919  1.349  -0.294 0.082  C2G  ZBC 12 
ZBC O2G  O2G  O  0 1 N N N 38.483 41.610 6.792  1.349  -1.337 -0.894 O2G  ZBC 13 
ZBC C3G  C3G  C  0 1 N N N 37.627 43.581 7.800  2.759  -0.130 0.654  C3G  ZBC 14 
ZBC O3G  O3G  O  0 1 N N N 36.915 44.111 8.919  3.642  0.317  -0.378 O3G  ZBC 15 
ZBC O1P  O1P  O  0 1 N N N 37.066 46.511 8.167  5.370  1.558  0.981  O1P  ZBC 16 
ZBC O2P  O2P  O  0 1 N N N 34.907 45.216 7.758  5.947  -0.786 0.244  O2P  ZBC 17 
ZBC OXT  OXT  O  0 1 N Y N 35.693 45.839 10.115 5.863  1.206  -1.469 OXT  ZBC 18 
ZBC H2P  H2P  H  0 1 N N N 34.126 45.164 8.296  5.882  -1.465 -0.442 H2P  ZBC 19 
ZBC HXT  HXT  H  0 1 N N N 36.473 45.915 10.652 6.807  1.399  -1.393 HXT  ZBC 20 
ZBC H6   H6   H  0 1 N N N 40.765 40.383 8.769  -1.470 1.240  0.932  H6   ZBC 21 
ZBC H41N H41N H  0 0 N N N 38.492 35.733 9.701  -5.324 -0.609 -0.939 H41N ZBC 22 
ZBC H42N H42N H  0 0 N N N 40.228 35.726 9.332  -4.980 -2.236 -1.181 H42N ZBC 23 
ZBC H1G1 H1G1 H  0 0 N N N 37.849 41.901 10.043 0.380  0.146  1.955  H1G1 ZBC 24 
ZBC H1G2 H1G2 H  0 0 N N N 39.445 42.120 9.167  0.694  -1.584 1.678  H1G2 ZBC 25 
ZBC H2G  H2G  H  0 1 N N N 36.716 41.644 7.963  1.036  0.640  -0.385 H2G  ZBC 26 
ZBC HA   HA   H  0 1 N N N 37.905 41.509 6.045  1.619  -2.199 -0.548 HA   ZBC 27 
ZBC H3G1 H3G1 H  0 0 N N N 38.638 44.014 7.774  2.742  0.604  1.459  H3G1 ZBC 28 
ZBC H3G2 H3G2 H  0 0 N N N 37.087 43.834 6.876  3.108  -1.087 1.041  H3G2 ZBC 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZBC P   O3G  SING N N 1  
ZBC P   O1P  DOUB N N 2  
ZBC P   O2P  SING N N 3  
ZBC P   OXT  SING N N 4  
ZBC BR5 C5   SING N N 5  
ZBC C5  C4   SING N N 6  
ZBC C5  C6   DOUB N N 7  
ZBC C4  N4   SING N N 8  
ZBC C4  N3   DOUB N N 9  
ZBC N3  C2   SING N N 10 
ZBC C2  O2   DOUB N N 11 
ZBC C2  N1   SING N N 12 
ZBC C6  N1   SING N N 13 
ZBC N1  C1G  SING N N 14 
ZBC C1G C2G  SING N N 15 
ZBC C2G O2G  SING N N 16 
ZBC C2G C3G  SING N N 17 
ZBC C3G O3G  SING N N 18 
ZBC O2P H2P  SING N N 19 
ZBC OXT HXT  SING N N 20 
ZBC C6  H6   SING N N 21 
ZBC N4  H41N SING N N 22 
ZBC N4  H42N SING N N 23 
ZBC C1G H1G1 SING N N 24 
ZBC C1G H1G2 SING N N 25 
ZBC C2G H2G  SING N N 26 
ZBC O2G HA   SING N N 27 
ZBC C3G H3G1 SING N N 28 
ZBC C3G H3G2 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZBC SMILES           ACDLabs              10.04 "O=C1N=C(C(Br)=CN1CC(O)COP(=O)(O)O)N"                                                                                      
ZBC SMILES_CANONICAL CACTVS               3.352 "NC1=NC(=O)N(C[C@H](O)CO[P](O)(O)=O)C=C1Br"                                                                                
ZBC SMILES           CACTVS               3.352 "NC1=NC(=O)N(C[CH](O)CO[P](O)(O)=O)C=C1Br"                                                                                 
ZBC SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1=C(C(=NC(=O)N1C[C@@H](COP(=O)(O)O)O)N)Br"                                                                               
ZBC SMILES           "OpenEye OEToolkits" 1.6.1 "C1=C(C(=NC(=O)N1CC(COP(=O)(O)O)O)N)Br"                                                                                    
ZBC InChI            InChI                1.03  "InChI=1S/C7H11BrN3O6P/c8-5-2-11(7(13)10-6(5)9)1-4(12)3-17-18(14,15)16/h2,4,12H,1,3H2,(H2,9,10,13)(H2,14,15,16)/t4-/m0/s1" 
ZBC InChIKey         InChI                1.03  VBQHVDIFDLFEIT-BYPYZUCNSA-N                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZBC "SYSTEMATIC NAME" ACDLabs              10.04 "(2S)-3-(4-amino-5-bromo-2-oxopyrimidin-1(2H)-yl)-2-hydroxypropyl dihydrogen phosphate" 
ZBC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2S)-3-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-2-hydroxy-propyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZBC "Create component"  2009-07-07 EBI  
ZBC "Modify descriptor" 2011-06-04 RCSB 
# 
