data_YLC
# 
_chem_comp.id                                    YLC 
_chem_comp.name                                  "5'-O-[({(2R)-2-amino-6-[(2E)-but-2-enoylamino]hexanoyl}oxy)phosphinato]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H30 N7 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-28 
_chem_comp.pdbx_modified_date                    2014-03-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        543.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CH4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLC C      C      C 0 1 N N N -43.318 133.853 12.986 2.360  -2.084 -1.482 C      YLC 1  
YLC N      N      N 0 1 N N N -42.598 134.702 10.821 4.149  -1.865 -3.111 N      YLC 2  
YLC O      O      O 0 1 N N N -43.712 134.680 13.819 2.312  -3.252 -1.787 O      YLC 3  
YLC N1     N1     N 0 1 Y N N -35.976 125.878 13.461 -8.565 3.423  -0.441 N1     YLC 4  
YLC C2     C2     C 0 1 Y N N -36.132 125.925 12.119 -8.212 3.093  0.788  C2     YLC 5  
YLC C3     C3     C 0 1 N N N -44.558 142.860 10.290 12.833 3.063  2.400  C3     YLC 6  
YLC N3     N3     N 0 1 Y N N -37.093 126.636 11.508 -7.206 2.282  1.040  N3     YLC 7  
YLC C4     C4     C 0 1 Y N N -37.975 127.368 12.232 -6.496 1.755  0.049  C4     YLC 8  
YLC C5     C5     C 0 1 Y N N -37.867 127.361 13.716 -6.832 2.075  -1.278 C5     YLC 9  
YLC C6     C6     C 0 1 Y N N -36.779 126.545 14.321 -7.914 2.945  -1.496 C6     YLC 10 
YLC N6     N6     N 0 1 N N N -36.611 126.494 15.655 -8.292 3.296  -2.780 N6     YLC 11 
YLC N7     N7     N 0 1 Y N N -38.842 128.137 14.187 -5.963 1.415  -2.080 N7     YLC 12 
YLC C8     C8     C 0 1 Y N N -39.525 128.612 13.108 -5.135 0.727  -1.349 C8     YLC 13 
YLC N9     N9     N 0 1 Y N N -39.021 128.143 11.941 -5.422 0.904  -0.029 N9     YLC 14 
YLC CA     CA     C 0 1 N N R -43.672 134.035 11.528 3.507  -1.228 -1.954 CA     YLC 15 
YLC CB     CB     C 0 1 N N N -44.973 134.837 11.418 4.528  -1.076 -0.824 CB     YLC 16 
YLC "C1'"  "C1'"  C 0 1 N N R -39.512 128.477 10.571 -4.714 0.296  1.101  "C1'"  YLC 17 
YLC "C2'"  "C2'"  C 0 1 N N R -40.582 127.535 10.063 -5.428 -1.001 1.558  "C2'"  YLC 18 
YLC "O2'"  "O2'"  O 0 1 N N N -40.475 127.381 8.651  -6.468 -0.709 2.494  "O2'"  YLC 19 
YLC "C3'"  "C3'"  C 0 1 N N S -41.869 128.241 10.455 -4.277 -1.783 2.237  "C3'"  YLC 20 
YLC "O3'"  "O3'"  O 0 1 N N N -42.996 127.849 9.688  -4.315 -1.599 3.654  "O3'"  YLC 21 
YLC "C4'"  "C4'"  C 0 1 N N R -41.499 129.685 10.184 -2.997 -1.158 1.648  "C4'"  YLC 22 
YLC "O4'"  "O4'"  O 0 1 N N N -40.125 129.771 10.565 -3.408 -0.163 0.695  "O4'"  YLC 23 
YLC "C5'"  "C5'"  C 0 1 N N N -42.346 130.701 10.932 -2.167 -2.237 0.949  "C5'"  YLC 24 
YLC "O5'"  "O5'"  O 0 1 N N N -42.230 130.422 12.311 -0.930 -1.673 0.507  "O5'"  YLC 25 
YLC OAD    OAD    O 0 1 N N N -44.097 138.746 7.908  9.945  2.578  -0.683 OAD    YLC 26 
YLC OAF    OAF    O 0 1 N N N -42.785 130.548 14.717 -0.408 -3.162 -1.463 OAF    YLC 27 
YLC OAI    OAI    O 0 1 N N N -44.512 131.187 12.888 0.777  -3.663 0.708  OAI    YLC 28 
YLC CAM    CAM    C 0 1 N N N -45.011 136.402 9.429  6.650  0.045  -0.129 CAM    YLC 29 
YLC CAN    CAN    C 0 1 N N N -45.391 135.024 9.961  5.629  -0.108 -1.259 CAN    YLC 30 
YLC CAO    CAO    C 0 1 N N N -46.192 137.323 9.226  7.752  1.013  -0.564 CAO    YLC 31 
YLC NAW    NAW    N 0 1 N N N -45.820 138.721 9.392  8.729  1.159  0.517  NAW    YLC 32 
YLC OAY    OAY    O 0 1 N N N -42.545 132.699 13.419 1.388  -1.547 -0.728 OAY    YLC 33 
YLC CBA    CBA    C 0 1 N N N -44.804 139.327 8.746  9.795  1.969  0.358  CBA    YLC 34 
YLC CBF    CBF    C 0 1 N N N -45.040 141.458 10.028 11.827 2.914  1.287  CBF    YLC 35 
YLC CBK    CBK    C 0 1 N N N -44.440 140.729 9.082  10.776 2.115  1.444  CBK    YLC 36 
YLC PBN    PBN    P 0 1 N N N -43.102 131.171 13.403 0.193  -2.525 -0.270 PBN    YLC 37 
YLC HN     HN     H 0 1 N N N -42.850 134.813 9.860  4.881  -1.279 -3.486 HN     YLC 38 
YLC HNA    HNA    H 0 1 N N N -42.437 135.600 11.230 4.504  -2.778 -2.871 HNA    YLC 39 
YLC H2     H2     H 0 1 N N N -35.446 125.360 11.505 -8.768 3.504  1.617  H2     YLC 40 
YLC H3     H3     H 0 1 N N N -45.159 143.311 11.094 13.617 3.753  2.090  H3     YLC 41 
YLC H3A    H3A    H 0 1 N N N -43.501 142.834 10.593 12.336 3.453  3.288  H3A    YLC 42 
YLC H3B    H3B    H 0 1 N N N -44.662 143.460 9.374  13.272 2.092  2.626  H3B    YLC 43 
YLC HN6    HN6    H 0 1 N N N -35.831 125.907 15.871 -9.040 3.898  -2.918 HN6    YLC 44 
YLC HN6A   HN6A   H 0 0 N N N -36.442 127.415 16.005 -7.808 2.941  -3.542 HN6A   YLC 45 
YLC H8     H8     H 0 1 N N N -40.369 129.283 13.175 -4.338 0.107  -1.733 H8     YLC 46 
YLC HA     HA     H 0 1 N N N -43.840 133.043 11.083 3.133  -0.245 -2.240 HA     YLC 47 
YLC HB     HB     H 0 1 N N N -45.770 134.301 11.953 4.031  -0.686 0.064  HB     YLC 48 
YLC HBA    HBA    H 0 1 N N N -44.824 135.825 11.877 4.967  -2.048 -0.598 HBA    YLC 49 
YLC "H1'"  "H1'"  H 0 1 N N N -38.664 128.461 9.871  -4.636 1.003  1.928  "H1'"  YLC 50 
YLC "H2'"  "H2'"  H 0 1 N N N -40.510 126.567 10.580 -5.821 -1.551 0.703  "H2'"  YLC 51 
YLC "HO2'" "HO2'" H 0 0 N N N -41.151 126.788 8.345  -6.944 -1.489 2.810  "HO2'" YLC 52 
YLC "H3'"  "H3'"  H 0 1 N N N -42.054 128.102 11.530 -4.336 -2.842 1.989  "H3'"  YLC 53 
YLC "HO3'" "HO3'" H 0 0 N N N -43.762 128.326 9.984  -5.127 -1.922 4.070  "HO3'" YLC 54 
YLC "H4'"  "H4'"  H 0 1 N N N -41.598 129.875 9.105  -2.412 -0.693 2.441  "H4'"  YLC 55 
YLC "H5'"  "H5'"  H 0 1 N N N -41.983 131.718 10.723 -1.967 -3.050 1.646  "H5'"  YLC 56 
YLC "H5'A" "H5'A" H 0 0 N N N -43.397 130.616 10.619 -2.718 -2.621 0.091  "H5'A" YLC 57 
YLC HAM    HAM    H 0 1 N N N -44.323 136.873 10.146 6.153  0.435  0.759  HAM    YLC 58 
YLC HAMA   HAMA   H 0 0 N N N -44.502 136.273 8.463  7.089  -0.927 0.097  HAMA   YLC 59 
YLC HAN    HAN    H 0 1 N N N -44.894 134.257 9.348  6.126  -0.497 -2.147 HAN    YLC 60 
YLC HANA   HANA   H 0 0 N N N -46.482 134.903 9.886  5.190  0.864  -1.485 HANA   YLC 61 
YLC HAO    HAO    H 0 1 N N N -46.587 137.178 8.210  8.248  0.623  -1.453 HAO    YLC 62 
YLC HAOA   HAOA   H 0 0 N N N -46.971 137.072 9.961  7.312  1.985  -0.790 HAOA   YLC 63 
YLC HNAW   HNAW   H 0 0 N N N -46.357 139.271 10.031 8.609  0.672  1.348  HNAW   YLC 64 
YLC HBF    HBF    H 0 1 N N N -45.860 141.046 10.597 11.961 3.455  0.363  HBF    YLC 65 
YLC HBK    HBK    H 0 1 N N N -43.637 141.189 8.525  10.642 1.573  2.369  HBK    YLC 66 
YLC HAI    HAI    H 0 1 N N N -45.084 130.761 13.516 1.187  -3.317 1.513  HAI    YLC 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLC C     O      DOUB N N 1  
YLC C     CA     SING N N 2  
YLC C     OAY    SING N N 3  
YLC N     CA     SING N N 4  
YLC N1    C2     DOUB Y N 5  
YLC N1    C6     SING Y N 6  
YLC C2    N3     SING Y N 7  
YLC C3    CBF    SING N N 8  
YLC N3    C4     DOUB Y N 9  
YLC C4    C5     SING Y N 10 
YLC C4    N9     SING Y N 11 
YLC C5    C6     DOUB Y N 12 
YLC C5    N7     SING Y N 13 
YLC C6    N6     SING N N 14 
YLC N7    C8     DOUB Y N 15 
YLC C8    N9     SING Y N 16 
YLC N9    "C1'"  SING N N 17 
YLC CA    CB     SING N N 18 
YLC CB    CAN    SING N N 19 
YLC "C1'" "C2'"  SING N N 20 
YLC "C1'" "O4'"  SING N N 21 
YLC "C2'" "O2'"  SING N N 22 
YLC "C2'" "C3'"  SING N N 23 
YLC "C3'" "O3'"  SING N N 24 
YLC "C3'" "C4'"  SING N N 25 
YLC "C4'" "O4'"  SING N N 26 
YLC "C4'" "C5'"  SING N N 27 
YLC "C5'" "O5'"  SING N N 28 
YLC "O5'" PBN    SING N N 29 
YLC OAD   CBA    DOUB N N 30 
YLC OAF   PBN    DOUB N N 31 
YLC OAI   PBN    SING N N 32 
YLC CAM   CAN    SING N N 33 
YLC CAM   CAO    SING N N 34 
YLC CAO   NAW    SING N N 35 
YLC NAW   CBA    SING N N 36 
YLC OAY   PBN    SING N N 37 
YLC CBA   CBK    SING N N 38 
YLC CBF   CBK    DOUB N E 39 
YLC N     HN     SING N N 40 
YLC N     HNA    SING N N 41 
YLC C2    H2     SING N N 42 
YLC C3    H3     SING N N 43 
YLC C3    H3A    SING N N 44 
YLC C3    H3B    SING N N 45 
YLC N6    HN6    SING N N 46 
YLC N6    HN6A   SING N N 47 
YLC C8    H8     SING N N 48 
YLC CA    HA     SING N N 49 
YLC CB    HB     SING N N 50 
YLC CB    HBA    SING N N 51 
YLC "C1'" "H1'"  SING N N 52 
YLC "C2'" "H2'"  SING N N 53 
YLC "O2'" "HO2'" SING N N 54 
YLC "C3'" "H3'"  SING N N 55 
YLC "O3'" "HO3'" SING N N 56 
YLC "C4'" "H4'"  SING N N 57 
YLC "C5'" "H5'"  SING N N 58 
YLC "C5'" "H5'A" SING N N 59 
YLC CAM   HAM    SING N N 60 
YLC CAM   HAMA   SING N N 61 
YLC CAN   HAN    SING N N 62 
YLC CAN   HANA   SING N N 63 
YLC CAO   HAO    SING N N 64 
YLC CAO   HAOA   SING N N 65 
YLC NAW   HNAW   SING N N 66 
YLC CBF   HBF    SING N N 67 
YLC CBK   HBK    SING N N 68 
YLC OAI   HAI    SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLC SMILES           ACDLabs              12.01 "O=C(/C=C/C)NCCCCC(N)C(=O)OP([O-])(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 
YLC InChI            InChI                1.03  
"InChI=1S/C20H30N7O9P/c1-2-5-13(28)23-7-4-3-6-11(21)20(31)36-37(32,33)34-8-12-15(29)16(30)19(35-12)27-10-26-14-17(22)24-9-25-18(14)27/h2,5,9-12,15-16,19,29-30H,3-4,6-8,21H2,1H3,(H,23,28)(H,32,33)(H2,22,24,25)/p-1/b5-2+/t11-,12-,15-,16-,19-/m1/s1" 
YLC InChIKey         InChI                1.03  ILVVVZQSKVIFML-XNGPLBMESA-M 
YLC SMILES_CANONICAL CACTVS               3.385 "C\C=C\C(=O)NCCCC[C@@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
YLC SMILES           CACTVS               3.385 "CC=CC(=O)NCCCC[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
YLC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C=C/C(=O)NCCCC[C@H](C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" 
YLC SMILES           "OpenEye OEToolkits" 1.7.6 "CC=CC(=O)NCCCCC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLC "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[({(2R)-2-amino-6-[(2E)-but-2-enoylamino]hexanoyl}oxy)phosphinato]adenosine"                                                                  
YLC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2R)-2-azanyl-6-[[(E)-but-2-enoyl]amino]hexanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLC "Create component" 2013-11-28 EBI  
YLC "Initial release"  2014-03-26 RCSB 
# 
