data_XFC
# 
_chem_comp.id                                    XFC 
_chem_comp.name                                  "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidine-5-carbaldehyde" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 F N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-28 
_chem_comp.pdbx_modified_date                    2016-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        353.198 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XFC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5T2W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XFC P     P1  P 0 1 N N N 15.527 0.260  30.248 -4.578 1.172  -0.051 P     XFC 1  
XFC OP1   O1  O 0 1 N N N 13.944 0.243  30.313 -5.140 2.092  -1.247 OP1   XFC 2  
XFC OP2   O2  O 0 1 N N N 15.815 -1.323 30.241 -5.632 0.228  0.383  OP2   XFC 3  
XFC "O5'" O3  O 0 1 N N N 15.978 0.804  28.807 -3.296 0.345  -0.566 "O5'" XFC 4  
XFC "C5'" C1  C 0 1 N N N 17.058 0.234  28.048 -2.633 -0.639 0.230  "C5'" XFC 5  
XFC "C4'" C2  C 0 1 N N R 16.649 0.293  26.601 -1.462 -1.228 -0.559 "C4'" XFC 6  
XFC "O4'" O4  O 0 1 N N N 15.515 -0.578 26.399 -0.422 -0.243 -0.738 "O4'" XFC 7  
XFC "C1'" C3  C 0 1 N N R 14.679 -0.030 25.400 0.795  -0.960 -1.005 "C1'" XFC 8  
XFC N1    N1  N 0 1 N N N 13.318 -0.586 25.550 1.933  -0.244 -0.425 N1    XFC 9  
XFC C2    C4  C 0 1 N N N 12.482 -0.526 24.429 1.904  0.097  0.873  C2    XFC 10 
XFC O2    O5  O 0 1 N N N 12.796 0.210  23.490 0.925  -0.200 1.537  O2    XFC 11 
XFC N3    N2  N 0 1 N N N 11.349 -1.271 24.404 2.905  0.748  1.462  N3    XFC 12 
XFC C4    C5  C 0 1 N N N 11.015 -2.061 25.429 3.988  1.090  0.780  C4    XFC 13 
XFC N4    N3  N 0 1 N N N 9.992  -2.916 25.242 5.018  1.760  1.390  N4    XFC 14 
XFC C5    C6  C 0 1 N N N 11.819 -2.049 26.651 4.064  0.737  -0.645 C5    XFC 15 
XFC C6    C7  C 0 1 N N N 12.950 -1.301 26.667 2.992  0.055  -1.203 C6    XFC 16 
XFC C5A   C8  C 0 1 N N N 11.417 -2.754 27.866 5.236  1.090  -1.449 C5A   XFC 17 
XFC O5A   O6  O 0 1 N N N 10.379 -3.385 27.987 6.203  1.599  -0.922 O5A   XFC 18 
XFC "C3'" C9  C 0 1 N N R 16.169 1.660  26.133 -0.766 -2.350 0.254  "C3'" XFC 19 
XFC "C2'" C10 C 0 1 N N S 14.774 1.485  25.561 0.661  -2.349 -0.351 "C2'" XFC 20 
XFC "F2'" F1  F 0 1 N N N 13.810 1.879  26.492 1.621  -2.512 0.654  "F2'" XFC 21 
XFC "O3'" O7  O 0 1 N N N 17.090 2.284  25.245 -1.412 -3.607 0.044  "O3'" XFC 22 
XFC O1    O8  O 0 1 N Y N 16.160 0.893  31.484 -4.150 2.106  1.189  O1    XFC 23 
XFC H1    H1  H 0 1 N N N 13.637 -0.656 30.328 -5.914 2.619  -1.007 H1    XFC 24 
XFC H2    H2  H 0 1 N N N 17.225 -0.810 28.352 -2.260 -0.176 1.143  H2    XFC 25 
XFC H3    H3  H 0 1 N N N 17.979 0.814  28.205 -3.335 -1.433 0.486  H3    XFC 26 
XFC H4    H4  H 0 1 N N N 17.491 -0.028 25.971 -1.802 -1.607 -1.523 H4    XFC 27 
XFC H5    H5  H 0 1 N N N 15.065 -0.296 24.405 0.937  -1.069 -2.080 H5    XFC 28 
XFC H6    H6  H 0 1 N N N 9.516  -2.941 24.363 4.926  2.055  2.310  H6    XFC 29 
XFC H7    H7  H 0 1 N N N 9.708  -3.526 25.982 5.837  1.938  0.902  H7    XFC 30 
XFC H8    H8  H 0 1 N N N 13.562 -1.266 27.556 3.005  -0.229 -2.245 H8    XFC 31 
XFC H9    H9  H 0 1 N N N 12.084 -2.714 28.715 5.240  0.897  -2.512 H9    XFC 32 
XFC H10   H10 H 0 1 N N N 16.073 2.291  27.029 -0.738 -2.102 1.315  H10   XFC 33 
XFC H11   H11 H 0 1 N N N 14.674 1.994  24.591 0.755  -3.135 -1.101 H11   XFC 34 
XFC H12   H12 H 0 1 N N N 17.937 2.360  25.668 -1.013 -4.341 0.532  H12   XFC 35 
XFC H13   H13 H 0 1 N N N 16.595 0.222  31.997 -3.461 2.751  0.977  H13   XFC 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XFC O2    C2    DOUB N N 1  
XFC N3    C2    SING N N 2  
XFC N3    C4    DOUB N N 3  
XFC C2    N1    SING N N 4  
XFC N4    C4    SING N N 5  
XFC "O3'" "C3'" SING N N 6  
XFC "C1'" N1    SING N N 7  
XFC "C1'" "C2'" SING N N 8  
XFC "C1'" "O4'" SING N N 9  
XFC C4    C5    SING N N 10 
XFC N1    C6    SING N N 11 
XFC "C2'" "C3'" SING N N 12 
XFC "C2'" "F2'" SING N N 13 
XFC "C3'" "C4'" SING N N 14 
XFC "O4'" "C4'" SING N N 15 
XFC "C4'" "C5'" SING N N 16 
XFC C5    C6    DOUB N N 17 
XFC C5    C5A   SING N N 18 
XFC C5A   O5A   DOUB N N 19 
XFC "C5'" "O5'" SING N N 20 
XFC "O5'" P     SING N N 21 
XFC OP2   P     DOUB N N 22 
XFC P     OP1   SING N N 23 
XFC P     O1    SING N N 24 
XFC OP1   H1    SING N N 25 
XFC "C5'" H2    SING N N 26 
XFC "C5'" H3    SING N N 27 
XFC "C4'" H4    SING N N 28 
XFC "C1'" H5    SING N N 29 
XFC N4    H6    SING N N 30 
XFC N4    H7    SING N N 31 
XFC C6    H8    SING N N 32 
XFC C5A   H9    SING N N 33 
XFC "C3'" H10   SING N N 34 
XFC "C2'" H11   SING N N 35 
XFC "O3'" H12   SING N N 36 
XFC O1    H13   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XFC SMILES           ACDLabs              12.01 "P(O)(O)(=O)OCC2OC(N1C=C(C(=NC1=O)N)C=O)C(C2O)F"                                                                                                           
XFC InChI            InChI                1.03  "InChI=1S/C10H13FN3O8P/c11-6-7(16)5(3-21-23(18,19)20)22-9(6)14-1-4(2-15)8(12)13-10(14)17/h1-2,5-7,9,16H,3H2,(H2,12,13,17)(H2,18,19,20)/t5-,6+,7-,9-/m1/s1" 
XFC InChIKey         InChI                1.03  WSKADZNTLMTFQS-JVZYCSMKSA-N                                                                                                                                
XFC SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1C=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F"                                                                                        
XFC SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1C=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F"                                                                                               
XFC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=C(C(=NC(=O)N1[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F)N)C=O"                                                                                        
XFC SMILES           "OpenEye OEToolkits" 2.0.6 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)F)N)C=O"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XFC "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidine-5-carbaldehyde"                                     
XFC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{S},5~{R})-5-(4-azanyl-5-methanoyl-2-oxidanylidene-pyrimidin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XFC "Create component"   2016-09-28 RCSB 
XFC "Other modification" 2016-09-28 RCSB 
XFC "Initial release"    2016-11-09 RCSB 
# 
