data_XBC
# 
_chem_comp.id                                    XBC 
_chem_comp.name                                  "Cruentaren A" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H51 N O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-09 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        589.760 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XBC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F2K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XBC C10  C1  C 0 1 N N S 176.142 133.562 142.104 -2.469 2.956  -0.433 C10  XBC 1  
XBC C13  C2  C 0 1 N N N 174.547 130.883 139.797 -0.438 5.038  -0.782 C13  XBC 2  
XBC C15  C3  C 0 1 N N N 174.726 133.276 137.944 2.284  4.306  0.160  C15  XBC 3  
XBC C17  C4  C 0 1 N N N 175.567 135.765 137.439 3.582  2.398  0.958  C17  XBC 4  
XBC C20  C5  C 0 1 N N R 174.391 138.577 136.737 6.976  0.738  0.339  C20  XBC 5  
XBC C21  C6  C 0 1 N N S 174.409 140.010 136.210 7.297  -0.757 0.387  C21  XBC 6  
XBC C24  C7  C 0 1 N N N 176.314 141.079 134.842 9.141  -2.443 0.372  C24  XBC 7  
XBC C26  C8  C 0 1 N N N 172.942 138.114 136.888 7.287  1.282  -1.056 C26  XBC 8  
XBC C02  C9  C 0 1 N N R 172.989 133.977 146.715 -5.051 -0.935 0.934  C02  XBC 9  
XBC C03  C10 C 0 1 N N S 173.763 135.203 147.200 -5.841 -0.000 1.851  C03  XBC 10 
XBC C04  C11 C 0 1 N N N 174.692 134.818 148.354 -4.920 0.913  2.665  C04  XBC 11 
XBC C05  C12 C 0 1 N N N 174.607 135.798 146.059 -6.792 0.881  1.021  C05  XBC 12 
XBC C06  C13 C 0 1 N N N 173.673 136.374 144.957 -6.627 0.596  -0.448 C06  XBC 13 
XBC C07  C14 C 0 1 N N N 173.928 136.333 143.641 -5.766 1.195  -1.234 C07  XBC 14 
XBC C08  C15 C 0 1 N N N 175.213 135.720 143.008 -4.853 2.306  -0.788 C08  XBC 15 
XBC C09  C16 C 0 1 N N S 174.881 134.277 142.589 -3.398 1.890  -1.018 C09  XBC 16 
XBC C11  C17 C 0 1 N N R 175.791 132.178 141.514 -1.018 2.607  -0.768 C11  XBC 17 
XBC C12  C18 C 0 1 N N R 174.937 132.290 140.244 -0.089 3.674  -0.183 C12  XBC 18 
XBC C14  C19 C 0 1 N N N 175.715 132.972 139.102 1.362  3.325  -0.518 C14  XBC 19 
XBC C16  C20 C 0 1 N N N 174.728 134.466 137.299 3.265  3.871  0.911  C16  XBC 20 
XBC C19  C21 C 0 1 N N N 175.126 137.683 135.730 5.515  0.948  0.646  C19  XBC 21 
XBC C23  C22 C 0 1 N N N 175.854 140.553 136.226 8.802  -0.961 0.200  C23  XBC 22 
XBC C25  C23 C 0 1 N N N 177.815 141.443 134.830 10.645 -2.648 0.184  C25  XBC 23 
XBC C29  C24 C 0 1 N N N 177.103 133.368 143.275 -2.644 3.006  1.087  C29  XBC 24 
XBC C31  C25 C 0 1 N N N 173.141 132.905 143.527 -2.861 -0.429 -1.139 C31  XBC 25 
XBC C32  C26 C 0 1 Y N N 172.810 131.664 144.405 -2.508 -1.753 -0.615 C32  XBC 26 
XBC C33  C27 C 0 1 Y N N 172.132 130.601 143.811 -1.676 -2.568 -1.413 C33  XBC 27 
XBC C35  C28 C 0 1 Y N N 171.807 129.465 144.557 -1.307 -3.825 -0.970 C35  XBC 28 
XBC C36  C29 C 0 1 Y N N 172.160 129.397 145.907 -1.748 -4.284 0.265  C36  XBC 29 
XBC C38  C30 C 0 1 N N N 172.118 127.029 146.025 -0.562 -6.294 -0.171 C38  XBC 30 
XBC C39  C31 C 0 1 Y N N 172.836 130.462 146.506 -2.556 -3.468 1.049  C39  XBC 31 
XBC C40  C32 C 0 1 Y N N 173.162 131.601 145.765 -2.921 -2.223 0.630  C40  XBC 32 
XBC C41  C33 C 0 1 N N N 173.909 132.762 146.471 -3.763 -1.414 1.588  C41  XBC 33 
XBC N18  N1  N 0 1 N N N 175.683 136.363 136.087 5.002  2.194  0.660  N18  XBC 34 
XBC O01  O1  O 0 1 N N N 172.052 133.632 147.689 -5.881 -2.088 0.657  O01  XBC 35 
XBC O22  O2  O 0 1 N N N 173.607 140.810 137.020 6.591  -1.430 -0.657 O22  XBC 36 
XBC O27  O3  O 0 1 N N N 175.265 138.077 134.620 4.802  -0.004 0.880  O27  XBC 37 
XBC O28  O4  O 0 1 N N N 176.968 131.505 141.193 -0.692 1.334  -0.208 O28  XBC 38 
XBC O30  O5  O 0 1 N N N 174.355 133.625 143.718 -3.135 0.622  -0.359 O30  XBC 39 
XBC O34  O6  O 0 1 N N N 171.782 130.675 142.453 -1.226 -2.130 -2.626 O34  XBC 40 
XBC O37  O7  O 0 1 N N N 171.833 128.253 146.667 -1.393 -5.519 0.696  O37  XBC 41 
XBC O42  O8  O 0 1 N N N 172.370 133.241 142.696 -2.937 -0.285 -2.354 O42  XBC 42 
XBC H101 H1  H 0 0 N N N 176.630 134.171 141.329 -2.717 3.928  -0.859 H101 XBC 43 
XBC H131 H2  H 0 0 N N N 173.990 130.383 140.603 -1.472 5.286  -0.543 H131 XBC 44 
XBC H132 H3  H 0 0 N N N 173.915 130.946 138.899 0.224  5.797  -0.366 H132 XBC 45 
XBC H133 H4  H 0 0 N N N 175.455 130.307 139.567 -0.313 5.002  -1.864 H133 XBC 46 
XBC H151 H5  H 0 0 N N N 174.018 132.518 137.645 2.135  5.367  0.027  H151 XBC 47 
XBC H171 H6  H 0 0 N N N 176.566 135.527 137.832 3.360  2.011  1.953  H171 XBC 48 
XBC H172 H7  H 0 0 N N N 175.063 136.467 138.119 2.977  1.872  0.220  H172 XBC 49 
XBC H201 H8  H 0 0 N N N 174.899 138.532 137.712 7.581  1.264  1.077  H201 XBC 50 
XBC H211 H9  H 0 0 N N N 174.043 140.013 135.173 6.993  -1.163 1.352  H211 XBC 51 
XBC H241 H10 H 0 0 N N N 175.729 141.976 134.591 8.852  -2.768 1.372  H241 XBC 52 
XBC H242 H11 H 0 0 N N N 176.132 140.300 134.088 8.599  -3.028 -0.371 H242 XBC 53 
XBC H262 H12 H 0 0 N N N 172.423 138.760 137.611 6.681  0.756  -1.795 H262 XBC 54 
XBC H261 H13 H 0 0 N N N 172.435 138.174 135.914 7.058  2.347  -1.091 H261 XBC 55 
XBC H263 H14 H 0 0 N N N 172.925 137.074 137.247 8.343  1.130  -1.278 H263 XBC 56 
XBC H021 H15 H 0 0 N N N 172.487 134.229 145.769 -4.837 -0.445 -0.009 H021 XBC 57 
XBC H031 H16 H 0 0 N N N 173.050 135.963 147.551 -6.442 -0.596 2.545  H031 XBC 58 
XBC H043 H17 H 0 0 N N N 174.099 134.391 149.176 -4.323 1.523  1.988  H043 XBC 59 
XBC H041 H18 H 0 0 N N N 175.422 134.074 148.004 -5.521 1.560  3.303  H041 XBC 60 
XBC H042 H19 H 0 0 N N N 175.223 135.713 148.711 -4.260 0.304  3.283  H042 XBC 61 
XBC H051 H20 H 0 0 N N N 175.241 135.011 145.625 -7.817 0.654  1.317  H051 XBC 62 
XBC H052 H21 H 0 0 N N N 175.242 136.603 146.457 -6.587 1.924  1.240  H052 XBC 63 
XBC H061 H22 H 0 0 N N N 172.752 136.841 145.274 -7.278 -0.155 -0.896 H061 XBC 64 
XBC H071 H23 H 0 0 N N N 173.191 136.754 142.973 -5.709 0.886  -2.278 H071 XBC 65 
XBC H082 H24 H 0 0 N N N 176.030 135.718 143.744 -5.066 3.204  -1.372 H082 XBC 66 
XBC H081 H25 H 0 0 N N N 175.514 136.307 142.128 -5.012 2.547  0.257  H081 XBC 67 
XBC H091 H26 H 0 0 N N N 174.144 134.302 141.772 -3.224 1.805  -2.090 H091 XBC 68 
XBC H111 H27 H 0 0 N N N 175.221 131.615 142.268 -0.893 2.571  -1.850 H111 XBC 69 
XBC H121 H28 H 0 0 N N N 174.029 132.871 140.464 -0.213 3.710  0.899  H121 XBC 70 
XBC H141 H29 H 0 0 N N N 176.511 132.302 138.744 1.508  3.376  -1.597 H141 XBC 71 
XBC H142 H30 H 0 0 N N N 176.161 133.910 139.465 1.584  2.317  -0.169 H142 XBC 72 
XBC H161 H31 H 0 0 N N N 173.985 134.525 136.518 3.848  4.568  1.496  H161 XBC 73 
XBC H232 H32 H 0 0 N N N 176.530 139.743 136.537 9.091  -0.636 -0.800 H232 XBC 74 
XBC H231 H33 H 0 0 N N N 175.912 141.377 136.952 9.343  -0.376 0.943  H231 XBC 75 
XBC H252 H34 H 0 0 N N N 178.096 141.810 133.832 10.934 -2.323 -0.815 H252 XBC 76 
XBC H251 H35 H 0 0 N N N 178.008 142.227 135.577 11.187 -2.062 0.927  H251 XBC 77 
XBC H253 H36 H 0 0 N N N 178.411 140.551 135.073 10.886 -3.703 0.307  H253 XBC 78 
XBC H291 H37 H 0 0 N N N 177.361 134.347 143.704 -3.678 3.254  1.325  H291 XBC 79 
XBC H293 H38 H 0 0 N N N 176.623 132.746 144.044 -2.395 2.035  1.513  H293 XBC 80 
XBC H292 H39 H 0 0 N N N 178.018 132.871 142.920 -1.982 3.766  1.503  H292 XBC 81 
XBC H351 H40 H 0 0 N N N 171.285 128.642 144.091 -0.663 -4.447 -1.571 H351 XBC 82 
XBC H383 H41 H 0 0 N N N 171.834 126.194 146.683 -1.074 -6.451 -1.120 H383 XBC 83 
XBC H381 H42 H 0 0 N N N 171.548 126.966 145.086 0.374  -5.764 -0.347 H381 XBC 84 
XBC H382 H43 H 0 0 N N N 173.194 126.973 145.805 -0.353 -7.258 0.293  H382 XBC 85 
XBC H391 H44 H 0 0 N N N 173.109 130.405 147.549 -2.903 -3.826 2.010  H391 XBC 86 
XBC H411 H45 H 0 0 N N N 174.288 132.404 147.439 -3.149 -0.602 1.951  H411 XBC 87 
XBC H412 H46 H 0 0 N N N 174.753 133.077 145.840 -4.026 -2.071 2.432  H412 XBC 88 
XBC H181 H47 H 0 0 N N N 176.164 135.845 135.380 5.572  2.956  0.473  H181 XBC 89 
XBC H011 H48 H 0 0 N N N 171.477 134.370 147.851 -5.464 -2.743 0.080  H011 XBC 90 
XBC H221 H49 H 0 0 N N N 172.717 140.478 137.012 6.812  -1.119 -1.545 H221 XBC 91 
XBC H281 H50 H 0 0 N N N 177.510 131.426 141.969 -0.780 1.292  0.754  H281 XBC 92 
XBC H341 H51 H 0 0 N N N 171.882 131.569 142.148 -0.383 -1.658 -2.585 H341 XBC 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XBC O27 C19  DOUB N N 1  
XBC C25 C24  SING N N 2  
XBC C24 C23  SING N N 3  
XBC C19 N18  SING N N 4  
XBC C19 C20  SING N N 5  
XBC N18 C17  SING N N 6  
XBC C21 C23  SING N N 7  
XBC C21 C20  SING N N 8  
XBC C21 O22  SING N N 9  
XBC C20 C26  SING N N 10 
XBC C16 C17  SING N N 11 
XBC C16 C15  DOUB N Z 12 
XBC C15 C14  SING N N 13 
XBC C14 C12  SING N N 14 
XBC C13 C12  SING N N 15 
XBC C12 C11  SING N N 16 
XBC O28 C11  SING N N 17 
XBC C11 C10  SING N N 18 
XBC C10 C09  SING N N 19 
XBC C10 C29  SING N N 20 
XBC O34 C33  SING N N 21 
XBC C09 C08  SING N N 22 
XBC C09 O30  SING N N 23 
XBC O42 C31  DOUB N N 24 
XBC C08 C07  SING N N 25 
XBC C31 O30  SING N N 26 
XBC C31 C32  SING N N 27 
XBC C07 C06  DOUB N Z 28 
XBC C33 C32  DOUB Y N 29 
XBC C33 C35  SING Y N 30 
XBC C32 C40  SING Y N 31 
XBC C35 C36  DOUB Y N 32 
XBC C06 C05  SING N N 33 
XBC C40 C41  SING N N 34 
XBC C40 C39  DOUB Y N 35 
XBC C36 C39  SING Y N 36 
XBC C36 O37  SING N N 37 
XBC C38 O37  SING N N 38 
XBC C05 C03  SING N N 39 
XBC C41 C02  SING N N 40 
XBC C02 C03  SING N N 41 
XBC C02 O01  SING N N 42 
XBC C03 C04  SING N N 43 
XBC C10 H101 SING N N 44 
XBC C13 H131 SING N N 45 
XBC C13 H132 SING N N 46 
XBC C13 H133 SING N N 47 
XBC C15 H151 SING N N 48 
XBC C17 H171 SING N N 49 
XBC C17 H172 SING N N 50 
XBC C20 H201 SING N N 51 
XBC C21 H211 SING N N 52 
XBC C24 H241 SING N N 53 
XBC C24 H242 SING N N 54 
XBC C26 H262 SING N N 55 
XBC C26 H261 SING N N 56 
XBC C26 H263 SING N N 57 
XBC C02 H021 SING N N 58 
XBC C03 H031 SING N N 59 
XBC C04 H043 SING N N 60 
XBC C04 H041 SING N N 61 
XBC C04 H042 SING N N 62 
XBC C05 H051 SING N N 63 
XBC C05 H052 SING N N 64 
XBC C06 H061 SING N N 65 
XBC C07 H071 SING N N 66 
XBC C08 H082 SING N N 67 
XBC C08 H081 SING N N 68 
XBC C09 H091 SING N N 69 
XBC C11 H111 SING N N 70 
XBC C12 H121 SING N N 71 
XBC C14 H141 SING N N 72 
XBC C14 H142 SING N N 73 
XBC C16 H161 SING N N 74 
XBC C23 H232 SING N N 75 
XBC C23 H231 SING N N 76 
XBC C25 H252 SING N N 77 
XBC C25 H251 SING N N 78 
XBC C25 H253 SING N N 79 
XBC C29 H291 SING N N 80 
XBC C29 H293 SING N N 81 
XBC C29 H292 SING N N 82 
XBC C35 H351 SING N N 83 
XBC C38 H383 SING N N 84 
XBC C38 H381 SING N N 85 
XBC C38 H382 SING N N 86 
XBC C39 H391 SING N N 87 
XBC C41 H411 SING N N 88 
XBC C41 H412 SING N N 89 
XBC N18 H181 SING N N 90 
XBC O01 H011 SING N N 91 
XBC O22 H221 SING N N 92 
XBC O28 H281 SING N N 93 
XBC O34 H341 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XBC SMILES           ACDLabs              12.01 "CCCC(O)C(C)C(=O)NC\C=C/CC(C)C(O)C(C)C1CC=CCC(C)C(O)Cc2cc(OC)cc(O)c2C(=O)O1"                                                                                                                                                                                        
XBC InChI            InChI                1.06  "InChI=1S/C33H51NO8/c1-7-12-26(35)22(4)32(39)34-16-11-10-14-21(3)31(38)23(5)29-15-9-8-13-20(2)27(36)18-24-17-25(41-6)19-28(37)30(24)33(40)42-29/h8-11,17,19-23,26-27,29,31,35-38H,7,12-16,18H2,1-6H3,(H,34,39)/b9-8-,11-10-/t20-,21+,22+,23+,26-,27+,29-,31+/m0/s1" 
XBC InChIKey         InChI                1.06  UXPPKIOUXFFKDI-QGMVIAOPSA-N                                                                                                                                                                                                                                         
XBC SMILES_CANONICAL CACTVS               3.385 "CCC[C@H](O)[C@@H](C)C(=O)NC\C=C/C[C@@H](C)[C@@H](O)[C@H](C)[C@@H]1C\C=C/C[C@H](C)[C@H](O)Cc2cc(OC)cc(O)c2C(=O)O1"                                                                                                                                                  
XBC SMILES           CACTVS               3.385 "CCC[CH](O)[CH](C)C(=O)NCC=CC[CH](C)[CH](O)[CH](C)[CH]1CC=CC[CH](C)[CH](O)Cc2cc(OC)cc(O)c2C(=O)O1"                                                                                                                                                                  
XBC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]([C@@H](C)C(=O)NC/C=C\C[C@@H](C)[C@H]([C@H](C)[C@@H]1C/C=C\C[C@@H]([C@@H](Cc2cc(cc(c2C(=O)O1)O)OC)O)C)O)O"                                                                                                                                                
XBC SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC(C(C)C(=O)NCC=CCC(C)C(C(C)C1CC=CCC(C(Cc2cc(cc(c2C(=O)O1)O)OC)O)C)O)O"                                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XBC "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide"                                                     
XBC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S})-~{N}-[(~{Z},5~{R},6~{R},7~{S})-7-[(4~{S},6~{Z},9~{S},10~{R})-14-methoxy-9-methyl-10,16-bis(oxidanyl)-2-oxidanylidene-3-oxabicyclo[10.4.0]hexadeca-1(16),6,12,14-tetraen-4-yl]-5-methyl-6-oxidanyl-oct-2-enyl]-2-methyl-3-oxidanyl-hexanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XBC "Create component" 2022-11-09 RCSB 
XBC "Initial release"  2023-04-05 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XBC 
_pdbx_chem_comp_synonyms.name         "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
