data_VRC
# 
_chem_comp.id                                    VRC 
_chem_comp.name                                  "(4S)-2-(aminomethyl)-4-nitrocyclohexa-2,5-dien-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H8 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        168.150 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VRC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FM0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VRC N1 N1 N 0 1 N N N -3.295 16.583 -34.187 -3.068 -1.687 0.512  N1 VRC 1  
VRC O1 O1 O 0 1 N N N 1.861  12.672 -36.123 3.329  -0.797 0.625  O1 VRC 2  
VRC C1 C1 C 0 1 N N N -1.850 12.473 -34.494 -0.264 1.995  0.025  C1 VRC 3  
VRC C5 C2 C 0 1 N N S -0.185 13.610 -35.771 1.164  0.055  0.623  C5 VRC 4  
VRC C6 C3 C 0 1 N N N -3.165 15.874 -35.550 -2.230 -1.306 -0.632 C6 VRC 5  
VRC C4 C4 C 0 1 N N N -1.004 14.708 -35.944 0.051  -0.824 0.147  C4 VRC 6  
VRC C3 C5 C 0 1 N N N -2.262 14.706 -35.384 -1.149 -0.362 -0.172 C3 VRC 7  
VRC C2 C6 C 0 1 N N N -2.720 13.582 -34.636 -1.421 1.084  -0.067 C2 VRC 8  
VRC O2 O2 O 0 1 N N N -3.863 13.590 -34.119 -2.560 1.510  -0.056 O2 VRC 9  
VRC C  C7 C 0 1 N N N -0.613 12.486 -35.045 0.928  1.504  0.337  C  VRC 10 
VRC N  N2 N 0 1 N N N 1.147  13.606 -36.345 2.405  -0.360 -0.036 N  VRC 11 
VRC O  O3 O 0 1 N N N 1.510  14.538 -36.993 2.511  -0.269 -1.246 O  VRC 12 
VRC H1 H1 H 0 1 N N N -3.900 17.374 -34.278 -3.801 -2.320 0.230  H1 VRC 13 
VRC H2 H2 H 0 1 N N N -3.676 15.947 -33.516 -2.510 -2.086 1.252  H2 VRC 14 
VRC H4 H4 H 0 1 N N N -2.177 11.606 -33.939 -0.387 3.051  -0.163 H4 VRC 15 
VRC H5 H5 H 0 1 N N N -0.585 13.166 -36.695 1.279  -0.076 1.699  H5 VRC 16 
VRC H6 H6 H 0 1 N N N -2.743 16.568 -36.292 -1.774 -2.199 -1.061 H6 VRC 17 
VRC H7 H7 H 0 1 N N N -4.155 15.534 -35.888 -2.845 -0.815 -1.386 H7 VRC 18 
VRC H8 H8 H 0 1 N N N -0.661 15.560 -36.513 0.236  -1.884 0.054  H8 VRC 19 
VRC H9 H9 H 0 1 N N N 0.042  11.635 -34.927 1.767  2.182  0.386  H9 VRC 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VRC O  N  DOUB N N 1  
VRC N  O1 DOUB N N 2  
VRC N  C5 SING N N 3  
VRC C4 C5 SING N N 4  
VRC C4 C3 DOUB N N 5  
VRC C5 C  SING N N 6  
VRC C6 C3 SING N N 7  
VRC C6 N1 SING N N 8  
VRC C3 C2 SING N N 9  
VRC C  C1 DOUB N N 10 
VRC C2 C1 SING N N 11 
VRC C2 O2 DOUB N N 12 
VRC N1 H1 SING N N 13 
VRC N1 H2 SING N N 14 
VRC C1 H4 SING N N 15 
VRC C5 H5 SING N N 16 
VRC C6 H6 SING N N 17 
VRC C6 H7 SING N N 18 
VRC C4 H8 SING N N 19 
VRC C  H9 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VRC SMILES           ACDLabs              12.01 "O=N(=O)C1C=CC(=O)C(CN)=C1"                                     
VRC InChI            InChI                1.06  "InChI=1S/C7H8N2O3/c8-4-5-3-6(9(11)12)1-2-7(5)10/h1-3,6H,4,8H2" 
VRC InChIKey         InChI                1.06  RIRRHVGTJTXLLP-UHFFFAOYSA-N                                     
VRC SMILES_CANONICAL CACTVS               3.385 "NCC1=C[C@H](C=CC1=O)[N](=O)=O"                                 
VRC SMILES           CACTVS               3.385 "NCC1=C[CH](C=CC1=O)[N](=O)=O"                                  
VRC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CC(=O)C(=CC1N(=O)=O)CN"                                     
VRC SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CC(=O)C(=CC1N(=O)=O)CN"                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VRC "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-2-(aminomethyl)-4-nitrocyclohexa-2,5-dien-1-one" 
VRC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(aminomethyl)-4-nitro-cyclohexa-2,5-dien-1-one"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VRC "Create component" 2022-09-02 RCSB 
VRC "Initial release"  2022-11-02 RCSB 
# 
