data_V8C
# 
_chem_comp.id                                    V8C 
_chem_comp.name                                  "5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H23 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-10 
_chem_comp.pdbx_modified_date                    2024-05-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.468 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V8C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JY0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V8C C1  C1  C 0  1 N N N N N N 24.832 41.628 46.347 4.512  4.615  0.202  C1  V8C 1  
V8C C2  C2  C 0  1 N N N N N N 25.896 43.070 44.658 2.334  3.594  -0.051 C2  V8C 2  
V8C C3  C3  C 0  1 N N N N N N 27.177 42.689 45.098 2.972  2.335  -0.074 C3  V8C 3  
V8C C4  C4  C 0  1 N N N N N N 28.288 43.246 44.531 2.225  1.195  -0.146 C4  V8C 4  
V8C C5  C5  C 0  1 N N N N N N 28.240 44.215 43.513 0.766  1.292  -0.197 C5  V8C 5  
V8C C6  C6  C 0  1 N N N N N N 26.938 44.578 43.076 0.132  2.553  -0.173 C6  V8C 6  
V8C C7  C7  C 0  1 N N N N N N 25.815 44.048 43.622 0.875  3.681  -0.096 C7  V8C 7  
V8C O1  O1  O -1 1 N N N N N N 28.169 46.945 44.125 -2.212 -0.882 3.050  O1  V8C 8  
V8C N   N1  N 1  1 N N N N N N 24.759 42.544 45.225 3.061  4.701  0.019  N   V8C 9  
V8C C   C8  C 0  1 N N N N N N 23.440 42.905 44.747 2.412  6.010  -0.089 C   V8C 10 
V8C O   O2  O 0  1 N N N N N N 29.481 42.786 45.020 2.832  -0.010 -0.169 O   V8C 11 
V8C C10 C9  C 0  1 Y N N N N N 31.940 44.824 43.218 0.029  -2.377 -0.362 C10 V8C 12 
V8C C11 C10 C 0  1 Y N N N N N 33.077 44.364 43.804 0.710  -3.558 -0.380 C11 V8C 13 
V8C C12 C11 C 0  1 Y N N N N N 33.036 43.355 44.819 2.106  -3.567 -0.327 C12 V8C 14 
V8C C13 C12 C 0  1 N N N N N N 34.237 41.679 46.209 4.253  -4.793 -0.291 C13 V8C 15 
V8C C14 C13 C 0  1 N N N N N N 35.443 43.605 45.240 2.045  -6.037 -0.420 C14 V8C 16 
V8C C15 C14 C 0  1 Y N N N N N 31.773 42.839 45.164 2.816  -2.377 -0.260 C15 V8C 17 
V8C C16 C15 C 0  1 Y N N N N N 30.649 43.327 44.560 2.139  -1.166 -0.239 C16 V8C 18 
V8C C17 C16 C 0  1 Y N N N N N 29.368 45.710 41.845 -1.466 0.153  -0.324 C17 V8C 19 
V8C C18 C17 C 0  1 Y N N N N N 30.017 45.282 40.690 -2.112 0.529  -1.502 C18 V8C 20 
V8C C19 C18 C 0  1 Y N N N N N 29.934 46.019 39.528 -3.489 0.569  -1.553 C19 V8C 21 
V8C C20 C19 C 0  1 Y N N N N N 29.196 47.193 39.478 -4.247 0.234  -0.428 C20 V8C 22 
V8C C21 C20 C 0  1 Y N N N N N 28.469 47.578 40.599 -3.615 -0.145 0.756  C21 V8C 23 
V8C C22 C21 C 0  1 Y N N N N N 28.547 46.851 41.779 -2.226 -0.193 0.814  C22 V8C 24 
V8C C23 C22 C 0  1 N N N N N N 27.819 47.379 42.999 -1.551 -0.592 2.063  C23 V8C 25 
V8C C24 C23 C 0  1 N N N N N N 29.184 47.964 38.190 -5.724 0.280  -0.493 C24 V8C 26 
V8C C8  C24 C 0  1 N N N N N N 29.435 44.758 43.005 0.007  0.111  -0.270 C8  V8C 27 
V8C C9  C25 C 0  1 Y N N N N N 30.659 44.318 43.556 0.731  -1.166 -0.291 C9  V8C 28 
V8C N1  N2  N 0  1 N N N N N N 34.192 42.890 45.410 2.789  -4.777 -0.346 N1  V8C 29 
V8C N25 N3  N 0  1 N N N N N N 30.265 47.797 37.413 -6.337 0.646  -1.637 N25 V8C 30 
V8C O2  O3  O 0  1 N N N N N N 27.038 48.346 42.857 -0.329 -0.634 2.112  O2  V8C 31 
V8C O26 O4  O 0  1 N N N N N N 28.283 48.758 37.921 -6.385 -0.011 0.484  O26 V8C 32 
V8C H1  H1  H 0  1 N N N N N N 23.816 41.330 46.644 4.999  4.574  -0.772 H1  V8C 33 
V8C H2  H2  H 0  1 N N N N N N 25.405 40.736 46.055 4.862  5.492  0.747  H2  V8C 34 
V8C H3  H3  H 0  1 N N N N N N 25.331 42.124 47.193 4.754  3.716  0.768  H3  V8C 35 
V8C H4  H4  H 0  1 N N N N N N 27.282 41.956 45.884 4.049  2.273  -0.037 H4  V8C 36 
V8C H5  H5  H 0  1 N N N N N N 26.839 45.302 42.281 -0.945 2.618  -0.211 H5  V8C 37 
V8C H6  H6  H 0  1 N N N N N N 24.847 44.370 43.268 0.391  4.646  -0.077 H6  V8C 38 
V8C H8  H8  H 0  1 N N N N N N 22.678 42.374 45.336 1.750  6.159  0.764  H8  V8C 39 
V8C H9  H9  H 0  1 N N N N N N 23.296 43.990 44.854 3.172  6.792  -0.099 H9  V8C 40 
V8C H10 H10 H 0  1 N N N N N N 23.345 42.625 43.687 1.833  6.055  -1.011 H10 V8C 41 
V8C H11 H11 H 0  1 N N N N N N 32.015 45.600 42.471 -1.050 -2.375 -0.403 H11 V8C 42 
V8C H12 H12 H 0  1 N N N N N N 34.031 44.768 43.498 0.168  -4.490 -0.435 H12 V8C 43 
V8C H13 H13 H 0  1 N N N N N N 35.263 41.516 46.571 4.577  -4.835 0.749  H13 V8C 44 
V8C H14 H14 H 0  1 N N N N N N 33.557 41.781 47.068 4.627  -5.668 -0.824 H14 V8C 45 
V8C H15 H15 H 0  1 N N N N N N 33.925 40.822 45.594 4.644  -3.889 -0.758 H15 V8C 46 
V8C H16 H16 H 0  1 N N N N N N 36.243 43.080 45.784 1.899  -6.312 -1.465 H16 V8C 47 
V8C H17 H17 H 0  1 N N N N N N 35.696 43.651 44.171 2.607  -6.821 0.087  H17 V8C 48 
V8C H18 H18 H 0  1 N N N N N N 35.339 44.626 45.637 1.075  -5.915 0.062  H18 V8C 49 
V8C H19 H19 H 0  1 N N N N N N 31.692 42.058 45.906 3.895  -2.393 -0.220 H19 V8C 50 
V8C H20 H20 H 0  1 N N N N N N 30.589 44.366 40.705 -1.533 0.789  -2.375 H20 V8C 51 
V8C H21 H21 H 0  1 N N N N N N 30.451 45.678 38.643 -3.985 0.861  -2.467 H21 V8C 52 
V8C H22 H22 H 0  1 N N N N N N 27.837 48.452 40.551 -4.203 -0.404 1.624  H22 V8C 53 
V8C H23 H23 H 0  1 N N N N N N 30.364 48.331 36.573 -5.809 0.878  -2.417 H23 V8C 54 
V8C H24 H24 H 0  1 N N N N N N 30.971 47.139 37.674 -7.306 0.677  -1.680 H24 V8C 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V8C N25 C24 SING N N 1  
V8C O26 C24 DOUB N N 2  
V8C C24 C20 SING N N 3  
V8C C20 C19 DOUB Y N 4  
V8C C20 C21 SING Y N 5  
V8C C19 C18 SING Y N 6  
V8C C21 C22 DOUB Y N 7  
V8C C18 C17 DOUB Y N 8  
V8C C22 C17 SING Y N 9  
V8C C22 C23 SING N N 10 
V8C C17 C8  SING N N 11 
V8C O2  C23 DOUB N N 12 
V8C C23 O1  SING N N 13 
V8C C8  C5  DOUB N N 14 
V8C C8  C9  SING N N 15 
V8C C6  C5  SING N N 16 
V8C C6  C7  DOUB N N 17 
V8C C10 C9  SING Y N 18 
V8C C10 C11 DOUB Y N 19 
V8C C5  C4  SING N N 20 
V8C C9  C16 DOUB Y N 21 
V8C C7  C2  SING N N 22 
V8C C11 C12 SING Y N 23 
V8C C4  O   SING N N 24 
V8C C4  C3  DOUB N N 25 
V8C C16 O   SING N N 26 
V8C C16 C15 SING Y N 27 
V8C C2  C3  SING N N 28 
V8C C2  N   DOUB N N 29 
V8C C   N   SING N N 30 
V8C C12 C15 DOUB Y N 31 
V8C C12 N1  SING N N 32 
V8C N   C1  SING N N 33 
V8C C14 N1  SING N N 34 
V8C N1  C13 SING N N 35 
V8C C1  H1  SING N N 36 
V8C C1  H2  SING N N 37 
V8C C1  H3  SING N N 38 
V8C C3  H4  SING N N 39 
V8C C6  H5  SING N N 40 
V8C C7  H6  SING N N 41 
V8C C   H8  SING N N 42 
V8C C   H9  SING N N 43 
V8C C   H10 SING N N 44 
V8C C10 H11 SING N N 45 
V8C C11 H12 SING N N 46 
V8C C13 H13 SING N N 47 
V8C C13 H14 SING N N 48 
V8C C13 H15 SING N N 49 
V8C C14 H16 SING N N 50 
V8C C14 H17 SING N N 51 
V8C C14 H18 SING N N 52 
V8C C15 H19 SING N N 53 
V8C C18 H20 SING N N 54 
V8C C19 H21 SING N N 55 
V8C C21 H22 SING N N 56 
V8C N25 H23 SING N N 57 
V8C N25 H24 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V8C InChI            InChI                1.06  "InChI=1S/C25H23N3O4/c1-27(2)15-6-9-18-21(12-15)32-22-13-16(28(3)4)7-10-19(22)23(18)17-8-5-14(24(26)29)11-20(17)25(30)31/h5-13H,1-4H3,(H2-,26,29,30,31)" 
V8C InChIKey         InChI                1.06  TZKHAYIVKGBSEZ-UHFFFAOYSA-N                                                                                                                              
V8C SMILES_CANONICAL CACTVS               3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C([O-])=O)C(N)=O)=[N+](C)C)c1"                                                                                     
V8C SMILES           CACTVS               3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C([O-])=O)C(N)=O)=[N+](C)C)c1"                                                                                     
V8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)[O-])C(=O)N"                                                                                     
V8C SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)[O-])C(=O)N"                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           V8C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V8C "Create component" 2023-07-10 PDBJ 
V8C "Initial release"  2024-05-29 RCSB 
# 
