data_P0C
#

_chem_comp.id                                   P0C
_chem_comp.name                                 "6-methyl-3-(beta-D-ribofuranosyl)-3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H15 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-Methyl-3-(beta-D-2-ribofuranosyl)pyrrolo[2,3-d] pyrimidin-2-one"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-05-16
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       281.265
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P0C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4PD8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P0C  C14  C1   C  0  1  N  N  N  -16.211  135.903   -7.062  -2.586   0.353  -0.551  C14  P0C   1  
P0C  C16  C2   C  0  1  N  N  N  -15.782  133.715   -6.618  -4.804   0.023  -0.319  C16  P0C   2  
P0C  C17  C3   C  0  1  N  N  N  -15.459  132.420   -5.887  -6.300   0.086  -0.489  C17  P0C   3  
P0C  O01  O1   O  0  1  N  N  N  -19.859  140.862   -6.732   3.915   2.030  -0.201  O01  P0C   4  
P0C  C02  C4   C  0  1  N  N  S  -18.779  139.944   -6.842   3.300   0.892   0.407  C02  P0C   5  
P0C  C03  C5   C  0  1  N  N  R  -17.476  140.494   -6.283   3.272  -0.295  -0.576  C03  P0C   6  
P0C  C04  C6   C  0  1  N  N  N  -17.264  140.232   -4.813   4.051  -1.474   0.010  C04  P0C   7  
P0C  O05  O2   O  0  1  N  N  N  -17.670  138.945   -4.313   4.118  -2.527  -0.954  O05  P0C   8  
P0C  O06  O3   O  0  1  N  N  N  -16.406  139.923   -7.093   1.895  -0.663  -0.762  O06  P0C   9  
P0C  C07  C7   C  0  1  N  N  R  -16.960  139.312   -8.250   1.105   0.520  -0.515  C07  P0C  10  
P0C  C08  C8   C  0  1  N  N  R  -18.437  139.694   -8.296   1.807   1.175   0.702  C08  P0C  11  
P0C  O09  O4   O  0  1  N  N  N  -18.689  140.860   -9.051   1.553   2.581   0.741  O09  P0C  12  
P0C  N10  N1   N  0  1  N  N  N  -16.717  137.861   -8.255  -0.276   0.159  -0.185  N10  P0C  13  
P0C  C11  C9   C  0  1  N  N  N  -16.780  137.123   -9.440  -0.517  -0.715   0.808  C11  P0C  14  
P0C  N12  N2   N  0  1  N  N  N  -16.558  135.788   -9.419  -1.752  -1.080   1.140  N12  P0C  15  
P0C  C13  C10  C  0  1  N  N  N  -16.276  135.163   -8.273  -2.801  -0.579   0.500  C13  P0C  16  
P0C  C15  C11  C  0  1  N  N  N  -15.901  134.988   -6.036  -3.919   0.713  -1.049  C15  P0C  17  
P0C  N18  N3   N  0  1  N  N  N  -16.010  133.851   -7.967  -4.149  -0.752   0.609  N18  P0C  18  
P0C  C19  C12  C  0  1  N  N  N  -16.431  137.224   -7.076  -1.297   0.708  -0.881  C19  P0C  19  
P0C  O20  O5   O  0  1  N  N  N  -17.039  137.675  -10.519   0.426  -1.195   1.417  O20  P0C  20  
P0C  H1   H1   H  0  1  N  N  N  -15.329  132.626   -4.814  -6.617  -0.671  -1.206  H1   P0C  21  
P0C  H2   H2   H  0  1  N  N  N  -16.284  131.705   -6.025  -6.783  -0.097   0.470  H2   P0C  22  
P0C  H3   H3   H  0  1  N  N  N  -14.531  131.992   -6.293  -6.583   1.074  -0.855  H3   P0C  23  
P0C  H4   H4   H  0  1  N  N  N  -20.060  141.007   -5.815   4.835   1.888  -0.461  H4   P0C  24  
P0C  H5   H5   H  0  1  N  N  N  -19.019  138.991   -6.348   3.827   0.618   1.321  H5   P0C  25  
P0C  H6   H6   H  0  1  N  N  N  -17.482  141.584   -6.433   3.711   0.002  -1.529  H6   P0C  26  
P0C  H7   H7   H  0  1  N  N  N  -16.189  140.344   -4.608   5.060  -1.152   0.267  H7   P0C  27  
P0C  H8   H8   H  0  1  N  N  N  -17.825  140.997   -4.255   3.546  -1.834   0.906  H8   P0C  28  
P0C  H9   H9   H  0  1  N  N  N  -17.489  138.895   -3.382   4.599  -3.309  -0.650  H9   P0C  29  
P0C  H10  H10  H  0  1  N  N  N  -16.480  139.742   -9.142   1.131   1.186  -1.377  H10  P0C  30  
P0C  H11  H11  H  0  1  N  N  N  -19.024  138.843   -8.673   1.498   0.699   1.633  H11  P0C  31  
P0C  H12  H12  H  0  1  N  N  N  -19.620  141.047   -9.044   1.972   3.036   1.485  H12  P0C  32  
P0C  H14  H14  H  0  1  N  N  N  -15.777  135.223   -4.989  -4.143   1.402  -1.850  H14  P0C  33  
P0C  H15  H15  H  0  1  N  N  N  -15.986  133.103   -8.630  -4.584  -1.337   1.250  H15  P0C  34  
P0C  H16  H16  H  0  1  N  N  N  -16.383  137.788   -6.156  -1.105   1.411  -1.679  H16  P0C  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P0C  O20  C11  DOUB  N  N   1  
P0C  C11  N12  SING  N  N   2  
P0C  C11  N10  SING  N  N   3  
P0C  N12  C13  DOUB  N  N   4  
P0C  O09  C08  SING  N  N   5  
P0C  C08  C07  SING  N  N   6  
P0C  C08  C02  SING  N  N   7  
P0C  C13  N18  SING  N  N   8  
P0C  C13  C14  SING  N  N   9  
P0C  N10  C07  SING  N  N  10  
P0C  N10  C19  SING  N  N  11  
P0C  C07  O06  SING  N  N  12  
P0C  N18  C16  SING  N  N  13  
P0C  O06  C03  SING  N  N  14  
P0C  C19  C14  DOUB  N  N  15  
P0C  C14  C15  SING  N  N  16  
P0C  C02  O01  SING  N  N  17  
P0C  C02  C03  SING  N  N  18  
P0C  C16  C15  DOUB  N  N  19  
P0C  C16  C17  SING  N  N  20  
P0C  C03  C04  SING  N  N  21  
P0C  C04  O05  SING  N  N  22  
P0C  C17  H1   SING  N  N  23  
P0C  C17  H2   SING  N  N  24  
P0C  C17  H3   SING  N  N  25  
P0C  O01  H4   SING  N  N  26  
P0C  C02  H5   SING  N  N  27  
P0C  C03  H6   SING  N  N  28  
P0C  C04  H7   SING  N  N  29  
P0C  C04  H8   SING  N  N  30  
P0C  O05  H9   SING  N  N  31  
P0C  C07  H10  SING  N  N  32  
P0C  C08  H11  SING  N  N  33  
P0C  O09  H12  SING  N  N  34  
P0C  C15  H14  SING  N  N  35  
P0C  N18  H15  SING  N  N  36  
P0C  C19  H16  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P0C  SMILES            ACDLabs               12.01  "O=C1N=C3C(=CN1C2OC(C(O)C2O)CO)C=C(N3)C"  
P0C  InChI             InChI                 1.03   "InChI=1S/C12H15N3O5/c1-5-2-6-3-15(12(19)14-10(6)13-5)11-9(18)8(17)7(4-16)20-11/h2-3,7-9,11,16-18H,4H2,1H3,(H,13,14,19)/t7-,8-,9-,11-/m1/s1"  
P0C  InChIKey          InChI                 1.03   GCNYJWODKQPZDE-TURQNECASA-N  
P0C  SMILES_CANONICAL  CACTVS                3.385  "CC1=CC2=CN([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C(=O)N=C2N1"  
P0C  SMILES            CACTVS                3.385  "CC1=CC2=CN([CH]3O[CH](CO)[CH](O)[CH]3O)C(=O)N=C2N1"  
P0C  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC1=CC2=CN(C(=O)N=C2N1)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O"  
P0C  SMILES            "OpenEye OEToolkits"  1.9.2  "CC1=CC2=CN(C(=O)N=C2N1)C3C(C(C(O3)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P0C  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-methyl-3-(beta-D-ribofuranosyl)-3,7-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one"  
P0C  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "3-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-6-methyl-7H-pyrrolo[2,3-d]pyrimidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P0C  "Create component"    2014-05-16  RCSB  
P0C  "Other modification"  2014-06-04  RCSB  
P0C  "Initial release"     2014-08-13  RCSB  
P0C  "Modify descriptor"   2014-09-05  RCSB  
P0C  "Modify synonyms"     2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     P0C
_pdbx_chem_comp_synonyms.name        "6-Methyl-3-(beta-D-2-ribofuranosyl)pyrrolo[2,3-d] pyrimidin-2-one"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
