data_OFC
#

_chem_comp.id                                   OFC
_chem_comp.name                                 "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-L-ribofuranosyl)pyrimidin-2(1H)-one"
_chem_comp.type                                 "L-DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C9 H13 F N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-04
_chem_comp.pdbx_modified_date                   2022-03-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.188
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OFC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MOO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OFC  N1      N1   N  0  1  N  N  N   -9.868  57.389   -9.480   2.332  -0.274  -0.306  N1     OFC   1  
OFC  C2      C1   C  0  1  N  N  N  -10.871  57.988   -8.788   3.616   0.129  -0.314  C2     OFC   2  
OFC  O2      O1   O  0  1  N  N  N  -12.048  57.964   -9.143   3.877   1.294  -0.565  O2     OFC   3  
OFC  P       P1   P  0  1  N  N  N   -5.356  54.729  -10.404  -4.318  -0.921  -0.010  P      OFC   4  
OFC  N3      N2   N  0  1  N  N  N  -10.512  58.675   -7.689   4.605  -0.723  -0.052  N3     OFC   5  
OFC  C4      C2   C  0  1  N  N  N   -9.205  58.780   -7.275   4.349  -1.995   0.223  C4     OFC   6  
OFC  N4      N3   N  0  1  N  N  N   -8.919  59.472   -6.177   5.379  -2.866   0.492  N4     OFC   7  
OFC  C5      C3   C  0  1  N  N  N   -8.175  58.141   -7.963   3.014  -2.449   0.239  C5     OFC   8  
OFC  C6      C4   C  0  1  N  N  N   -8.556  57.460   -9.083   2.019  -1.571  -0.029  C6     OFC   9  
OFC  "C1'"   C5   C  0  1  N  N  S  -10.312  56.709  -10.710   1.264   0.688  -0.592  "C1'"  OFC  10  
OFC  "O4'"   O2   O  0  1  N  N  N   -9.105  56.477  -11.495  -0.029   0.070  -0.417  "O4'"  OFC  11  
OFC  "C2'"   C6   C  0  1  N  N  S  -11.015  55.470  -10.490   1.292   1.842   0.435  "C2'"  OFC  12  
OFC  "F2'"   F1   F  0  1  N  N  N  -11.889  55.279  -11.583   1.955   2.954  -0.095  "F2'"  OFC  13  
OFC  "C3'"   C7   C  0  1  N  N  S   -9.829  54.530  -10.548  -0.200   2.163   0.679  "C3'"  OFC  14  
OFC  "O3'"   O3   O  0  1  N  N  N  -10.331  53.235  -10.839  -0.491   3.509   0.298  "O3'"  OFC  15  
OFC  "C4'"   C8   C  0  1  N  N  S   -9.069  55.092  -11.733  -0.952   1.165  -0.229  "C4'"  OFC  16  
OFC  "C5'"   C9   C  0  1  N  N  N   -7.637  54.607  -11.893  -2.227   0.674   0.461  "C5'"  OFC  17  
OFC  "O5'"   O4   O  0  1  N  N  N   -6.997  54.939  -10.642  -2.929  -0.213  -0.412  "O5'"  OFC  18  
OFC  OP1     O5   O  0  1  N  N  N   -5.058  55.117   -9.024  -4.147  -1.658   1.262  OP1    OFC  19  
OFC  OP2     O6   O  0  1  N  N  N   -5.136  53.363  -11.000  -5.459   0.201   0.168  OP2    OFC  20  
OFC  H41     H1   H  0  1  N  N  N   -9.652  59.912   -5.658   6.297  -2.550   0.481  H1     OFC  21  
OFC  H42     H2   H  0  1  N  N  N   -7.971  59.553   -5.870   5.189  -3.795   0.693  H2     OFC  22  
OFC  H5      H3   H  0  1  N  N  N   -7.147  58.182   -7.633   2.789  -3.482   0.461  H3     OFC  23  
OFC  H6      H4   H  0  1  N  N  N   -7.802  56.962   -9.675   0.989  -1.895  -0.022  H4     OFC  24  
OFC  "H1'"   H5   H  0  1  N  N  N  -10.967  57.394  -11.268   1.367   1.078  -1.604  H5     OFC  25  
OFC  "H2'"   H6   H  0  1  N  N  N  -11.520  55.431   -9.514   1.769   1.519   1.360  H6     OFC  26  
OFC  "H3'"   H7   H  0  1  N  N  N   -9.232  54.569   -9.625  -0.460   1.999   1.725  H7     OFC  27  
OFC  "HO3'"  H8   H  0  0  N  Y  N  -10.803  52.901  -10.085   0.001   4.175   0.797  H8     OFC  28  
OFC  "H4'"   H9   H  0  1  N  N  N   -9.624  54.852  -12.652  -1.191   1.628  -1.186  H9     OFC  29  
OFC  "H5'"   H10  H  0  1  N  N  N   -7.612  53.521  -12.066  -1.964   0.149   1.379  H10    OFC  30  
OFC  "H5''"  H11  H  0  0  N  N  N   -7.144  55.123  -12.730  -2.862   1.528   0.699  H11    OFC  31  
OFC  HOP2    H13  H  0  0  N  N  N   -4.771  52.784  -10.341  -5.625   0.724  -0.628  H13    OFC  32  
OFC  OP3     OP3  O  0  1  N  Y  N   -4.664  55.779  -11.382  -4.753  -1.948  -1.172  OP3    OFC  33  
OFC  HOP3    H12  H  0  0  N  Y  N   -4.205  56.434  -10.870  -5.583  -2.411  -0.997  H12    OFC  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OFC  "C5'"  "C4'"   SING  N  N   1  
OFC  "C5'"  "O5'"   SING  N  N   2  
OFC  "C4'"  "O4'"   SING  N  N   3  
OFC  "C4'"  "C3'"   SING  N  N   4  
OFC  "F2'"  "C2'"   SING  N  N   5  
OFC  "O4'"  "C1'"   SING  N  N   6  
OFC  OP2    P       SING  N  N   7  
OFC  "O3'"  "C3'"   SING  N  N   8  
OFC  "C1'"  "C2'"   SING  N  N   9  
OFC  "C1'"  N1      SING  N  N  10  
OFC  "O5'"  P       SING  N  N  11  
OFC  "C3'"  "C2'"   SING  N  N  12  
OFC  P      OP1     DOUB  N  N  13  
OFC  N1     C6      SING  N  N  14  
OFC  N1     C2      SING  N  N  15  
OFC  O2     C2      DOUB  N  N  16  
OFC  C6     C5      DOUB  N  N  17  
OFC  C2     N3      SING  N  N  18  
OFC  C5     C4      SING  N  N  19  
OFC  N3     C4      DOUB  N  N  20  
OFC  C4     N4      SING  N  N  21  
OFC  N4     H41     SING  N  N  22  
OFC  N4     H42     SING  N  N  23  
OFC  C5     H5      SING  N  N  24  
OFC  C6     H6      SING  N  N  25  
OFC  "C1'"  "H1'"   SING  N  N  26  
OFC  "C2'"  "H2'"   SING  N  N  27  
OFC  "C3'"  "H3'"   SING  N  N  28  
OFC  "O3'"  "HO3'"  SING  N  N  29  
OFC  "C4'"  "H4'"   SING  N  N  30  
OFC  "C5'"  "H5'"   SING  N  N  31  
OFC  "C5'"  "H5''"  SING  N  N  32  
OFC  OP2    HOP2    SING  N  N  33  
OFC  P      OP3     SING  N  N  34  
OFC  OP3    HOP3    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OFC  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(N2C=CC(N)=NC2=O)C(F)C1O"  
OFC  InChI             InChI                 1.03   "InChI=1S/C9H13FN3O7P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)13-2-1-5(11)12-9(13)15/h1-2,4,6-8,14H,3H2,(H2,11,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m0/s1"  
OFC  InChIKey          InChI                 1.03   KTAATIGPZHTGOP-PSQAKQOGSA-N  
OFC  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@H]2O[C@@H](CO[P](O)(O)=O)[C@H](O)[C@@H]2F"  
OFC  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F"  
OFC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)N=C1N)[C@@H]2[C@H]([C@H]([C@@H](O2)COP(=O)(O)O)O)F"  
OFC  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OFC  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-L-ribofuranosyl)pyrimidin-2(1H)-one"  
OFC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{S},3~{S},4~{S},5~{S})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OFC  "Create component"  2021-05-04  RCSB  
OFC  "Initial release"   2022-03-16  RCSB  
##
