data_L9C
# 
_chem_comp.id                                    L9C 
_chem_comp.name                                  "2-chloro-N-(3-chloro-4-methoxyphenyl)-N-[(1R)-2-oxo-2-[(2-phenylethyl)amino]-1-(thiophen-2-yl)ethyl]acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 Cl2 N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L9C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U4K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L9C C10 C1  C  0 1 N N R N N N -1.448 1.845  21.205 -0.217 1.533  0.415  C10 L9C 1  
L9C C11 C2  C  0 1 Y N N N N N -2.217 2.124  19.913 -0.298 1.302  1.902  C11 L9C 2  
L9C C13 C3  C  0 1 Y N N N N N -2.797 3.061  17.794 0.364  1.289  4.096  C13 L9C 3  
L9C C14 C4  C  0 1 Y N N N N N -1.865 3.008  18.881 0.665  1.590  2.778  C14 L9C 4  
L9C C15 C5  C  0 1 N N N N N N 0.617  0.328  21.628 -2.259 2.004  -0.828 C15 L9C 5  
L9C C21 C6  C  0 1 Y N N N N N -1.672 -1.820 21.302 -1.109 -1.152 0.579  C21 L9C 6  
L9C C22 C7  C  0 1 Y N N N N N -1.955 -2.940 20.522 -1.476 -2.482 0.613  C22 L9C 7  
L9C C23 C8  C  0 1 N N N N N N -1.734 -5.260 19.031 -2.139 -5.100 0.725  C23 L9C 8  
L9C C1  C9  C  0 1 Y N N N N N -3.622 2.406  26.598 6.385  0.416  -1.531 C1  L9C 9  
L9C C12 C10 C  0 1 Y N N N N N -3.909 2.219  17.954 -0.845 0.760  4.289  C12 L9C 10 
L9C C16 C11 C  0 1 N N N N N N 1.531  1.400  22.156 -1.799 3.431  -0.978 C16 L9C 11 
L9C C17 C12 C  0 1 Y N N N N N -1.731 -2.927 19.146 -2.573 -2.918 -0.115 C17 L9C 12 
L9C C18 C13 C  0 1 Y N N N N N -1.223 -1.789 18.545 -3.302 -2.017 -0.879 C18 L9C 13 
L9C C19 C14 C  0 1 Y N N N N N -0.945 -0.702 19.306 -2.936 -0.685 -0.913 C19 L9C 14 
L9C C2  C15 C  0 1 Y N N N N N -4.015 3.650  26.126 5.780  0.009  -0.356 C2  L9C 15 
L9C C20 C16 C  0 1 Y N N N N N -1.204 -0.691 20.649 -1.840 -0.248 -0.180 C20 L9C 16 
L9C C3  C17 C  0 1 Y N N N N N -4.830 4.458  26.904 6.228  -1.125 0.296  C3  L9C 17 
L9C C4  C18 C  0 1 Y N N N N N -5.252 4.023  28.149 7.282  -1.851 -0.227 C4  L9C 18 
L9C C5  C19 C  0 1 Y N N N N N -4.861 2.781  28.619 7.886  -1.445 -1.401 C5  L9C 19 
L9C C6  C20 C  0 1 Y N N N N N -4.045 1.975  27.843 7.437  -0.312 -2.054 C6  L9C 20 
L9C C7  C21 C  0 1 N N N N N N -3.550 4.135  24.751 4.631  0.801  0.213  C7  L9C 21 
L9C C8  C22 C  0 1 N N N N N N -4.166 3.336  23.602 3.313  0.266  -0.351 C8  L9C 22 
L9C C9  C23 C  0 1 N N N N N N -2.455 1.952  22.351 0.931  0.741  -0.155 C9  L9C 23 
L9C CL2 CL1 CL 0 0 N N N N N N -0.878 -1.587 16.815 -4.675 -2.563 -1.791 CL2 L9C 24 
L9C N1  N1  N  0 1 N N N N N N -3.204 3.189  22.522 2.197  1.036  0.203  N1  L9C 25 
L9C N2  N2  N  0 1 N N N N N N -0.751 0.551  21.199 -1.467 1.102  -0.215 N2  L9C 26 
L9C O1  O1  O  0 1 N N N N N N -2.619 1.047  23.096 0.717  -0.163 -0.935 O1  L9C 27 
L9C O2  O2  O  0 1 N N N N N N 1.076  -0.762 21.514 -3.342 1.667  -1.259 O2  L9C 28 
L9C O3  O3  O  0 1 N N N N N N -2.012 -4.057 18.375 -2.934 -4.229 -0.081 O3  L9C 29 
L9C S1  S1  S  0 1 Y N N N N N -3.690 1.443  19.438 -1.680 0.618  2.748  S1  L9C 30 
L9C CL1 CL2 CL 0 0 N Y N N N N 2.492  1.626  20.630 -2.997 4.349  -1.965 CL1 L9C 31 
L9C H1  H1  H  0 1 N N N N N N -0.703 2.644  21.334 -0.059 2.594  0.220  H1  L9C 32 
L9C H2  H2  H  0 1 N N N N N N -2.657 3.692  16.929 1.056  1.469  4.905  H2  L9C 33 
L9C H3  H3  H  0 1 N N N N N N -0.963 3.601  18.904 1.609  2.023  2.483  H3  L9C 34 
L9C H4  H4  H  0 1 N N N N N N -1.812 -1.832 22.373 -0.254 -0.813 1.146  H4  L9C 35 
L9C H5  H5  H  0 1 N N N N N N -2.353 -3.829 20.989 -0.909 -3.184 1.207  H5  L9C 36 
L9C H6  H6  H  0 1 N N N N N N -1.978 -6.104 18.369 -1.110 -5.089 0.366  H6  L9C 37 
L9C H7  H7  H  0 1 N N N N N N -0.666 -5.296 19.293 -2.166 -4.762 1.761  H7  L9C 38 
L9C H8  H8  H  0 1 N N N N N N -2.339 -5.326 19.947 -2.535 -6.114 0.663  H8  L9C 39 
L9C H9  H9  H  0 1 N N N N N N -2.987 1.775  25.994 6.031  1.298  -2.043 H9  L9C 40 
L9C H10 H10 H  0 1 N N N N N N -4.735 2.093  17.269 -1.249 0.464  5.246  H10 L9C 41 
L9C H11 H11 H  0 1 N N N N N N 0.988  2.310  22.452 -1.712 3.890  0.007  H11 L9C 42 
L9C H12 H12 H  0 1 N N N N N N 2.149  1.052  22.997 -0.829 3.451  -1.474 H12 L9C 43 
L9C H13 H13 H  0 1 N N N N N N -0.511 0.172  18.843 -3.503 0.016  -1.508 H13 L9C 44 
L9C H14 H14 H  0 1 N N N N N N -5.136 5.427  26.539 5.756  -1.442 1.214  H14 L9C 45 
L9C H15 H15 H  0 1 N N N N N N -5.887 4.653  28.754 7.633  -2.736 0.283  H15 L9C 46 
L9C H16 H16 H  0 1 N N N N N N -5.192 2.441  29.589 8.710  -2.013 -1.810 H16 L9C 47 
L9C H17 H17 H  0 1 N N N N N N -3.738 1.007  28.211 7.907  0.003  -2.974 H17 L9C 48 
L9C H18 H18 H  0 1 N N N N N N -2.455 4.042  24.697 4.627  0.705  1.299  H18 L9C 49 
L9C H19 H19 H  0 1 N N N N N N -3.834 5.192  24.636 4.744  1.850  -0.058 H19 L9C 50 
L9C H20 H20 H  0 1 N N N N N N -5.055 3.864  23.227 3.318  0.362  -1.436 H20 L9C 51 
L9C H21 H21 H  0 1 N N N N N N -4.458 2.340  23.967 3.201  -0.784 -0.079 H21 L9C 52 
L9C H22 H22 H  0 1 N N N N N N -3.055 3.948  21.888 2.368  1.759  0.827  H22 L9C 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L9C CL2 C18 SING N N 1  
L9C C13 C12 DOUB Y N 2  
L9C C13 C14 SING Y N 3  
L9C C12 S1  SING Y N 4  
L9C O3  C23 SING N N 5  
L9C O3  C17 SING N N 6  
L9C C18 C17 DOUB Y N 7  
L9C C18 C19 SING Y N 8  
L9C C14 C11 DOUB Y N 9  
L9C C17 C22 SING Y N 10 
L9C C19 C20 DOUB Y N 11 
L9C S1  C11 SING Y N 12 
L9C C11 C10 SING N N 13 
L9C C22 C21 DOUB Y N 14 
L9C C20 N2  SING N N 15 
L9C C20 C21 SING Y N 16 
L9C N2  C10 SING N N 17 
L9C N2  C15 SING N N 18 
L9C C10 C9  SING N N 19 
L9C O2  C15 DOUB N N 20 
L9C C15 C16 SING N N 21 
L9C C9  N1  SING N N 22 
L9C C9  O1  DOUB N N 23 
L9C N1  C8  SING N N 24 
L9C C8  C7  SING N N 25 
L9C C7  C2  SING N N 26 
L9C C2  C1  DOUB Y N 27 
L9C C2  C3  SING Y N 28 
L9C C1  C6  SING Y N 29 
L9C C3  C4  DOUB Y N 30 
L9C C6  C5  DOUB Y N 31 
L9C C4  C5  SING Y N 32 
L9C C16 CL1 SING N N 33 
L9C C10 H1  SING N N 34 
L9C C13 H2  SING N N 35 
L9C C14 H3  SING N N 36 
L9C C21 H4  SING N N 37 
L9C C22 H5  SING N N 38 
L9C C23 H6  SING N N 39 
L9C C23 H7  SING N N 40 
L9C C23 H8  SING N N 41 
L9C C1  H9  SING N N 42 
L9C C12 H10 SING N N 43 
L9C C16 H11 SING N N 44 
L9C C16 H12 SING N N 45 
L9C C19 H13 SING N N 46 
L9C C3  H14 SING N N 47 
L9C C4  H15 SING N N 48 
L9C C5  H16 SING N N 49 
L9C C6  H17 SING N N 50 
L9C C7  H18 SING N N 51 
L9C C7  H19 SING N N 52 
L9C C8  H20 SING N N 53 
L9C C8  H21 SING N N 54 
L9C N1  H22 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L9C SMILES           ACDLabs              12.01 "O=C(CCl)N(C(c1cccs1)C(=O)NCCc1ccccc1)c1ccc(OC)c(Cl)c1"                                                                                                                     
L9C InChI            InChI                1.03  "InChI=1S/C23H22Cl2N2O3S/c1-30-19-10-9-17(14-18(19)25)27(21(28)15-24)22(20-8-5-13-31-20)23(29)26-12-11-16-6-3-2-4-7-16/h2-10,13-14,22H,11-12,15H2,1H3,(H,26,29)/t22-/m0/s1" 
L9C InChIKey         InChI                1.03  UNVKYJSNMVDZJE-QFIPXVFZSA-N                                                                                                                                                 
L9C SMILES_CANONICAL CACTVS               3.385 "COc1ccc(cc1Cl)N([C@H](C(=O)NCCc2ccccc2)c3sccc3)C(=O)CCl"                                                                                                                   
L9C SMILES           CACTVS               3.385 "COc1ccc(cc1Cl)N([CH](C(=O)NCCc2ccccc2)c3sccc3)C(=O)CCl"                                                                                                                    
L9C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1Cl)N([C@@H](c2cccs2)C(=O)NCCc3ccccc3)C(=O)CCl"                                                                                                                  
L9C SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1Cl)N(C(c2cccs2)C(=O)NCCc3ccccc3)C(=O)CCl"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L9C "SYSTEMATIC NAME" ACDLabs              12.01 "2-chloro-N-(3-chloro-4-methoxyphenyl)-N-[(1R)-2-oxo-2-[(2-phenylethyl)amino]-1-(thiophen-2-yl)ethyl]acetamide"       
L9C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[2-chloranylethanoyl-(3-chloranyl-4-methoxy-phenyl)amino]-~{N}-(2-phenylethyl)-2-thiophen-2-yl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L9C "Create component" 2022-03-01 RCSB 
L9C "Initial release"  2022-12-07 RCSB 
L9C "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L9C 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C16 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
