data_L5C
# 
_chem_comp.id                                    L5C 
_chem_comp.name                                  "N-[4-[[3-[2-(4,6-dimethylpyrimidin-2-yl)sulfanylethanoylamino]phenyl]methoxy]phenyl]-1-methyl-pyrazole-4-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N6 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-15 
_chem_comp.pdbx_modified_date                    2018-10-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.588 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L5C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5YQO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L5C C11  C1  C 0 1 Y N N -14.133 -13.125 -19.896 -4.135  -0.386 -1.138 C11  L5C 1  
L5C C13  C2  C 0 1 Y N N -12.216 -14.408 -19.236 -5.868  0.149  0.431  C13  L5C 2  
L5C C14  C3  C 0 1 Y N N -11.752 -13.355 -18.470 -5.037  -0.228 1.479  C14  L5C 3  
L5C C15  C4  C 0 1 Y N N -12.488 -12.185 -18.409 -3.762  -0.687 1.217  C15  L5C 4  
L5C C17  C5  C 0 1 N N N -11.691 -16.752 -18.446 -8.161  0.357  -0.171 C17  L5C 5  
L5C C19  C6  C 0 1 Y N N -10.851 -17.989 -18.732 -9.497  0.941  0.049  C19  L5C 6  
L5C C20  C7  C 0 1 Y N N -10.197 -18.225 -19.930 -9.876  1.790  1.113  C20  L5C 7  
L5C N01  N1  N 0 1 N N N -16.338 -6.296  -17.613 3.428   -0.632 -0.415 N01  L5C 8  
L5C C02  C8  C 0 1 Y N N -16.274 -7.178  -18.767 2.384   -1.551 -0.273 C02  L5C 9  
L5C C03  C9  C 0 1 Y N N -15.991 -8.529  -18.665 1.136   -1.126 0.165  C03  L5C 10 
L5C C04  C10 C 0 1 Y N N -15.923 -9.290  -19.822 0.107   -2.036 0.304  C04  L5C 11 
L5C C05  C11 C 0 1 Y N N -16.120 -8.716  -21.060 0.317   -3.370 0.008  C05  L5C 12 
L5C C06  C12 C 0 1 Y N N -16.391 -7.362  -21.159 1.558   -3.797 -0.428 C06  L5C 13 
L5C C07  C13 C 0 1 Y N N -16.460 -6.597  -20.008 2.590   -2.891 -0.575 C07  L5C 14 
L5C C08  C14 C 0 1 N N N -15.625 -10.780 -19.730 -1.247  -1.575 0.779  C08  L5C 15 
L5C O09  O1  O 0 1 N N N -14.394 -10.860 -19.034 -2.046  -1.204 -0.347 O09  L5C 16 
L5C C10  C15 C 0 1 Y N N -13.682 -12.069 -19.123 -3.306  -0.762 -0.091 C10  L5C 17 
L5C C12  C16 C 0 1 Y N N -13.393 -14.297 -19.958 -5.412  0.069  -0.878 C12  L5C 18 
L5C N16  N2  N 0 1 N N N -11.475 -15.647 -19.348 -7.162  0.615  0.696  N16  L5C 19 
L5C O18  O2  O 0 1 N N N -12.473 -16.708 -17.555 -7.961  -0.358 -1.134 O18  L5C 20 
L5C N21  N3  N 0 1 Y N N -9.581  -19.385 -19.827 -11.135 2.094  0.958  N21  L5C 21 
L5C N22  N4  N 0 1 Y N N -9.825  -19.905 -18.593 -11.615 1.463  -0.196 N22  L5C 22 
L5C C23  C17 C 0 1 Y N N -10.600 -19.071 -17.915 -10.609 0.766  -0.749 C23  L5C 23 
L5C C24  C18 C 0 1 N N N -9.308  -21.176 -18.112 -12.981 1.554  -0.716 C24  L5C 24 
L5C C25  C19 C 0 1 N N N -16.662 -6.709  -16.262 4.694   -1.001 -0.135 C25  L5C 25 
L5C O26  O3  O 0 1 N N N -16.925 -7.827  -15.986 4.939   -2.152 0.158  O26  L5C 26 
L5C C27  C20 C 0 1 N N N -16.659 -5.609  -15.198 5.805   0.016  -0.188 C27  L5C 27 
L5C S28  S1  S 0 1 N N N -14.944 -5.222  -14.682 7.374   -0.783 0.234  S28  L5C 28 
L5C C29  C21 C 0 1 Y N N -14.089 -4.172  -15.905 8.464   0.595  0.099  C29  L5C 29 
L5C N30  N5  N 0 1 Y N N -12.941 -3.601  -15.584 9.756   0.424  0.338  N30  L5C 30 
L5C C31  C22 C 0 1 Y N N -12.302 -2.829  -16.449 10.601  1.437  0.245  C31  L5C 31 
L5C C32  C23 C 0 1 Y N N -12.862 -2.634  -17.710 10.121  2.688  -0.108 C32  L5C 32 
L5C C33  C24 C 0 1 Y N N -14.065 -3.239  -18.009 8.764   2.832  -0.351 C33  L5C 33 
L5C N34  N6  N 0 1 Y N N -14.640 -3.996  -17.089 7.973   1.777  -0.245 N34  L5C 34 
L5C C35  C25 C 0 1 N N N -14.704 -3.049  -19.385 8.197   4.174  -0.737 C35  L5C 35 
L5C C36  C26 C 0 1 N N N -10.978 -2.173  -16.090 12.069  1.233  0.520  C36  L5C 36 
L5C H111 H1  H 0 0 N N N -15.057 -13.037 -20.448 -3.779  -0.444 -2.156 H111 L5C 37 
L5C H141 H2  H 0 0 N N N -10.824 -13.445 -17.925 -5.391  -0.166 2.497  H141 L5C 38 
L5C H151 H3  H 0 0 N N N -12.138 -11.359 -17.807 -3.116  -0.980 2.032  H151 L5C 39 
L5C H201 H4  H 0 0 N N N -10.193 -17.575 -20.793 -9.236  2.127  1.915  H201 L5C 40 
L5C H011 H5  H 0 0 N N N -16.143 -5.327  -17.763 3.242   0.272  -0.714 H011 L5C 41 
L5C H031 H6  H 0 0 N N N -15.826 -8.983  -17.699 0.971   -0.084 0.397  H031 L5C 42 
L5C H051 H7  H 0 0 N N N -16.063 -9.322  -21.952 -0.489  -4.080 0.118  H051 L5C 43 
L5C H061 H8  H 0 0 N N N -16.547 -6.907  -22.126 1.719   -4.840 -0.659 H061 L5C 44 
L5C H071 H9  H 0 0 N N N -16.661 -5.538  -20.079 3.559   -3.225 -0.916 H071 L5C 45 
L5C H081 H10 H 0 0 N N N -16.419 -11.300 -19.174 -1.737  -2.383 1.321  H081 L5C 46 
L5C H082 H11 H 0 0 N N N -15.532 -11.219 -20.734 -1.127  -0.715 1.438  H082 L5C 47 
L5C H121 H12 H 0 0 N N N -13.734 -15.121 -20.568 -6.057  0.362  -1.693 H121 L5C 48 
L5C H161 H13 H 0 0 N N N -10.792 -15.740 -20.073 -7.339  1.123  1.503  H161 L5C 49 
L5C H231 H14 H 0 0 N N N -10.967 -19.212 -16.909 -10.662 0.174  -1.651 H231 L5C 50 
L5C H241 H15 H 0 0 N N N -8.695  -21.644 -18.897 -13.053 2.396  -1.404 H241 L5C 51 
L5C H243 H16 H 0 0 N N N -8.691  -21.006 -17.218 -13.232 0.633  -1.242 H243 L5C 52 
L5C H242 H17 H 0 0 N N N -10.147 -21.840 -17.857 -13.676 1.701  0.111  H242 L5C 53 
L5C H271 H18 H 0 0 N N N -17.126 -4.703  -15.612 5.868   0.433  -1.192 H271 L5C 54 
L5C H272 H19 H 0 0 N N N -17.232 -5.950  -14.323 5.600   0.814  0.526  H272 L5C 55 
L5C H321 H20 H 0 0 N N N -12.361 -2.018  -18.443 10.789  3.533  -0.190 H321 L5C 56 
L5C H353 H21 H 0 0 N N N -15.644 -3.618  -19.435 8.215   4.278  -1.822 H353 L5C 57 
L5C H352 H22 H 0 0 N N N -14.913 -1.981  -19.548 7.169   4.250  -0.382 H352 L5C 58 
L5C H351 H23 H 0 0 N N N -14.015 -3.410  -20.162 8.796   4.965  -0.286 H351 L5C 59 
L5C H363 H24 H 0 0 N N N -10.697 -2.451  -15.063 12.578  0.964  -0.406 H363 L5C 60 
L5C H362 H25 H 0 0 N N N -10.199 -2.514  -16.788 12.496  2.155  0.914  H362 L5C 61 
L5C H361 H26 H 0 0 N N N -11.080 -1.080  -16.159 12.195  0.433  1.250  H361 L5C 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L5C C06 C05  DOUB Y N 1  
L5C C06 C07  SING Y N 2  
L5C C05 C04  SING Y N 3  
L5C C07 C02  DOUB Y N 4  
L5C C12 C11  DOUB Y N 5  
L5C C12 C13  SING Y N 6  
L5C C20 N21  DOUB Y N 7  
L5C C20 C19  SING Y N 8  
L5C C11 C10  SING Y N 9  
L5C N21 N22  SING Y N 10 
L5C C04 C08  SING N N 11 
L5C C04 C03  DOUB Y N 12 
L5C C08 O09  SING N N 13 
L5C C35 C33  SING N N 14 
L5C N16 C13  SING N N 15 
L5C N16 C17  SING N N 16 
L5C C13 C14  DOUB Y N 17 
L5C C10 O09  SING N N 18 
L5C C10 C15  DOUB Y N 19 
L5C C02 C03  SING Y N 20 
L5C C02 N01  SING N N 21 
L5C C19 C17  SING N N 22 
L5C C19 C23  DOUB Y N 23 
L5C N22 C24  SING N N 24 
L5C N22 C23  SING Y N 25 
L5C C14 C15  SING Y N 26 
L5C C17 O18  DOUB N N 27 
L5C C33 C32  DOUB Y N 28 
L5C C33 N34  SING Y N 29 
L5C C32 C31  SING Y N 30 
L5C N01 C25  SING N N 31 
L5C N34 C29  DOUB Y N 32 
L5C C31 C36  SING N N 33 
L5C C31 N30  DOUB Y N 34 
L5C C25 O26  DOUB N N 35 
L5C C25 C27  SING N N 36 
L5C C29 N30  SING Y N 37 
L5C C29 S28  SING N N 38 
L5C C27 S28  SING N N 39 
L5C C11 H111 SING N N 40 
L5C C14 H141 SING N N 41 
L5C C15 H151 SING N N 42 
L5C C20 H201 SING N N 43 
L5C N01 H011 SING N N 44 
L5C C03 H031 SING N N 45 
L5C C05 H051 SING N N 46 
L5C C06 H061 SING N N 47 
L5C C07 H071 SING N N 48 
L5C C08 H081 SING N N 49 
L5C C08 H082 SING N N 50 
L5C C12 H121 SING N N 51 
L5C N16 H161 SING N N 52 
L5C C23 H231 SING N N 53 
L5C C24 H241 SING N N 54 
L5C C24 H243 SING N N 55 
L5C C24 H242 SING N N 56 
L5C C27 H271 SING N N 57 
L5C C27 H272 SING N N 58 
L5C C32 H321 SING N N 59 
L5C C35 H353 SING N N 60 
L5C C35 H352 SING N N 61 
L5C C35 H351 SING N N 62 
L5C C36 H363 SING N N 63 
L5C C36 H362 SING N N 64 
L5C C36 H361 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L5C InChI            InChI                1.03  "InChI=1S/C26H26N6O3S/c1-17-11-18(2)29-26(28-17)36-16-24(33)30-22-6-4-5-19(12-22)15-35-23-9-7-21(8-10-23)31-25(34)20-13-27-32(3)14-20/h4-14H,15-16H2,1-3H3,(H,30,33)(H,31,34)" 
L5C InChIKey         InChI                1.03  NPUWKDPBMLZNJM-UHFFFAOYSA-N                                                                                                                                                    
L5C SMILES_CANONICAL CACTVS               3.385 "Cn1cc(cn1)C(=O)Nc2ccc(OCc3cccc(NC(=O)CSc4nc(C)cc(C)n4)c3)cc2"                                                                                                                 
L5C SMILES           CACTVS               3.385 "Cn1cc(cn1)C(=O)Nc2ccc(OCc3cccc(NC(=O)CSc4nc(C)cc(C)n4)c3)cc2"                                                                                                                 
L5C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(nc(n1)SCC(=O)Nc2cccc(c2)COc3ccc(cc3)NC(=O)c4cnn(c4)C)C"                                                                                                                 
L5C SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc(nc(n1)SCC(=O)Nc2cccc(c2)COc3ccc(cc3)NC(=O)c4cnn(c4)C)C"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L5C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[4-[[3-[2-(4,6-dimethylpyrimidin-2-yl)sulfanylethanoylamino]phenyl]methoxy]phenyl]-1-methyl-pyrazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L5C "Create component" 2017-11-15 PDBJ 
L5C "Initial release"  2018-10-17 RCSB 
# 
