data_KOC
# 
_chem_comp.id                                    KOC 
_chem_comp.name                                  "N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N,N-dimethyl-N~3~-[4-(1,3-thiazol-2-yl)phenyl]-beta-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H40 F2 N5 O7 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         AK2305 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-08 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        775.822 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KOC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TVB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KOC C10 C1  C 0 1 N N N 18.216 63.158 15.856 -0.996 2.204  -4.110 C10 KOC 1  
KOC C13 C2  C 0 1 N N N 21.330 66.093 18.328 -1.635 3.894  -1.473 C13 KOC 2  
KOC C14 C3  C 0 1 N N N 21.844 66.607 19.653 -2.825 4.714  -0.931 C14 KOC 3  
KOC C15 C4  C 0 1 N N N 20.712 66.306 20.617 -3.896 3.628  -0.651 C15 KOC 4  
KOC C16 C5  C 0 1 N N S 20.138 64.968 20.127 -3.021 2.444  -0.169 C16 KOC 5  
KOC C17 C6  C 0 1 N N N 18.615 64.931 20.274 -3.736 1.137  -0.396 C17 KOC 6  
KOC C18 C7  C 0 1 Y N N 18.892 63.516 22.251 -5.166 -0.598 0.378  C18 KOC 7  
KOC C20 C8  C 0 1 Y N N 20.317 63.493 24.189 -5.535 -2.556 -0.956 C20 KOC 8  
KOC C23 C9  C 0 1 Y N N 22.649 60.941 26.712 -7.422 -6.357 -1.120 C23 KOC 9  
KOC O6  O1  O 0 1 N N N 23.168 63.231 17.244 2.929  2.303  -2.187 O6  KOC 10 
KOC C6  C10 C 0 1 N N N 22.519 62.382 16.637 2.655  1.283  -1.583 C6  KOC 11 
KOC C5  C11 C 0 1 Y N N 23.095 61.039 16.417 3.727  0.463  -1.000 C5  KOC 12 
KOC C32 C12 C 0 1 Y N N 22.540 59.845 16.129 5.030  0.753  -1.072 C32 KOC 13 
KOC C3  C13 C 0 1 Y N N 23.461 58.735 16.154 5.891  -0.163 -0.446 C3  KOC 14 
KOC C2  C14 C 0 1 Y N N 23.262 57.364 15.986 7.303  -0.134 -0.352 C2  KOC 15 
KOC S   S1  S 0 1 Y N N 24.813 60.906 16.708 3.472  -1.026 -0.107 S   KOC 16 
KOC C4  C15 C 0 1 Y N N 24.762 59.189 16.447 5.202  -1.229 0.147  C4  KOC 17 
KOC C33 C16 C 0 1 Y N N 25.831 58.297 16.530 5.912  -2.232 0.814  C33 KOC 18 
KOC C34 C17 C 0 1 Y N N 25.596 56.944 16.351 7.283  -2.175 0.889  C34 KOC 19 
KOC C1  C18 C 0 1 Y N N 24.313 56.459 16.108 7.971  -1.121 0.302  C1  KOC 20 
KOC C   C19 C 0 1 N N N 23.990 54.945 16.120 9.475  -1.070 0.391  C   KOC 21 
KOC F1  F1  F 0 1 N N N 23.792 54.554 17.419 9.981  -0.325 -0.679 F1  KOC 22 
KOC P   P1  P 0 1 N N N 25.357 53.930 15.328 9.965  -0.287 1.962  P   KOC 23 
KOC O2  O2  O 0 1 N N N 25.999 54.410 14.066 11.436 -0.131 1.998  O2  KOC 24 
KOC O1  O3  O 0 1 N N N 26.356 53.833 16.478 9.269  1.160  2.080  O1  KOC 25 
KOC O   O4  O 0 1 N N N 24.690 52.556 15.160 9.493  -1.212 3.193  O   KOC 26 
KOC F   F2  F 0 1 N N N 22.760 54.708 15.545 9.989  -2.370 0.338  F   KOC 27 
KOC N   N1  N 0 1 N N N 21.273 62.599 16.187 1.369  0.904  -1.448 N   KOC 28 
KOC C7  C20 C 0 1 N N S 20.587 63.849 16.476 0.300  1.721  -2.029 C7  KOC 29 
KOC C8  C21 C 0 1 N N N 19.373 64.111 15.533 0.106  1.337  -3.498 C8  KOC 30 
KOC C11 C22 C 0 1 N N N 18.886 65.550 15.723 -0.292 -0.137 -3.592 C11 KOC 31 
KOC C9  C23 C 0 1 N N N 19.779 63.914 14.067 1.414  1.562  -4.260 C9  KOC 32 
KOC C12 C24 C 0 1 N N N 20.225 63.846 17.968 -0.982 1.482  -1.274 C12 KOC 33 
KOC O5  O5  O 0 1 N N N 19.722 62.854 18.461 -1.274 0.361  -0.915 O5  KOC 34 
KOC N1  N2  N 0 1 N N N 20.538 64.917 18.718 -1.804 2.513  -0.998 N1  KOC 35 
KOC O4  O6  O 0 1 N N N 17.905 65.464 19.444 -3.541 0.508  -1.414 O4  KOC 36 
KOC N2  N3  N 0 1 N N N 18.080 64.242 21.321 -4.592 0.667  0.533  N2  KOC 37 
KOC C27 C25 C 0 1 N N N 16.639 64.325 21.602 -4.922 1.483  1.704  C27 KOC 38 
KOC C28 C26 C 0 1 N N N 16.305 65.493 22.519 -6.197 2.283  1.426  C28 KOC 39 
KOC C29 C27 C 0 1 N N N 14.829 65.570 22.852 -6.467 3.214  2.580  C29 KOC 40 
KOC O3  O7  O 0 1 N N N 13.993 65.163 22.054 -5.714 3.236  3.531  O3  KOC 41 
KOC N4  N4  N 0 1 N N N 14.471 66.129 24.026 -7.545 4.022  2.555  N4  KOC 42 
KOC C31 C28 C 0 1 N N N 15.405 66.502 25.093 -8.454 3.996  1.406  C31 KOC 43 
KOC C30 C29 C 0 1 N N N 13.067 66.422 24.316 -7.808 4.928  3.676  C30 KOC 44 
KOC C26 C30 C 0 1 Y N N 19.151 62.160 22.055 -5.939 -1.138 1.399  C26 KOC 45 
KOC C25 C31 C 0 1 Y N N 19.987 61.480 22.923 -6.510 -2.383 1.248  C25 KOC 46 
KOC C21 C32 C 0 1 Y N N 20.586 62.140 23.997 -6.311 -3.102 0.068  C21 KOC 47 
KOC C19 C33 C 0 1 Y N N 19.474 64.173 23.332 -4.966 -1.311 -0.798 C19 KOC 48 
KOC C22 C34 C 0 1 Y N N 21.512 61.430 24.893 -6.923 -4.437 -0.098 C22 KOC 49 
KOC S1  S2  S 0 1 Y N N 22.567 60.187 24.316 -7.922 -5.260 1.098  S1  KOC 50 
KOC C24 C35 C 0 1 Y N N 23.247 60.069 25.882 -8.098 -6.629 0.001  C24 KOC 51 
KOC N3  N5  N 0 1 Y N N 21.657 61.717 26.161 -6.807 -5.196 -1.150 N3  KOC 52 
KOC H1  H1  H 0 1 N N N 17.915 63.289 16.906 -1.945 1.982  -3.621 H1  KOC 53 
KOC H2  H2  H 0 1 N N N 17.363 63.382 15.199 -0.752 3.256  -3.968 H2  KOC 54 
KOC H3  H3  H 0 1 N N N 18.541 62.119 15.695 -1.077 1.989  -5.175 H3  KOC 55 
KOC H4  H4  H 0 1 N N N 22.160 65.809 17.665 -1.637 3.914  -2.563 H4  KOC 56 
KOC H5  H5  H 0 1 N N N 20.702 66.845 17.828 -0.699 4.305  -1.095 H5  KOC 57 
KOC H6  H6  H 0 1 N N N 22.763 66.079 19.949 -2.550 5.231  -0.011 H6  KOC 58 
KOC H7  H7  H 0 1 N N N 22.042 67.688 19.605 -3.179 5.422  -1.681 H7  KOC 59 
KOC H8  H8  H 0 1 N N N 21.091 66.214 21.646 -4.584 3.950  0.131  H8  KOC 60 
KOC H9  H9  H 0 1 N N N 19.947 67.095 20.578 -4.438 3.370  -1.561 H9  KOC 61 
KOC H10 H10 H 0 1 N N N 20.589 64.139 20.692 -2.772 2.561  0.885  H10 KOC 62 
KOC H11 H11 H 0 1 N N N 20.772 64.016 25.017 -5.380 -3.109 -1.870 H11 KOC 63 
KOC H12 H12 H 0 1 N N N 22.931 61.027 27.751 -7.381 -7.049 -1.947 H12 KOC 64 
KOC H13 H13 H 0 1 N N N 21.491 59.729 15.898 5.397  1.633  -1.579 H13 KOC 65 
KOC H14 H14 H 0 1 N N N 22.272 56.997 15.757 7.854  0.678  -0.803 H14 KOC 66 
KOC H15 H15 H 0 1 N N N 26.829 58.657 16.731 5.381  -3.054 1.272  H15 KOC 67 
KOC H16 H16 H 0 1 N N N 26.423 56.252 16.401 7.827  -2.953 1.405  H16 KOC 68 
KOC H17 H17 H 0 1 N N N 27.216 54.100 16.175 8.302  1.134  2.064  H17 KOC 69 
KOC H18 H18 H 0 1 N N N 24.808 52.253 14.267 9.721  -0.856 4.062  H18 KOC 70 
KOC H19 H19 H 0 1 N N N 20.812 61.894 15.648 1.150  0.091  -0.967 H19 KOC 71 
KOC H20 H20 H 0 1 N N N 21.298 64.673 16.317 0.571  2.775  -1.962 H20 KOC 72 
KOC H21 H21 H 0 1 N N N 18.592 65.703 16.772 -0.430 -0.410 -4.638 H21 KOC 73 
KOC H22 H22 H 0 1 N N N 19.696 66.248 15.464 0.494  -0.754 -3.156 H22 KOC 74 
KOC H23 H23 H 0 1 N N N 18.021 65.733 15.069 -1.223 -0.297 -3.048 H23 KOC 75 
KOC H24 H24 H 0 1 N N N 20.131 62.882 13.919 1.276  1.289  -5.306 H24 KOC 76 
KOC H25 H25 H 0 1 N N N 18.911 64.102 13.418 1.697  2.612  -4.193 H25 KOC 77 
KOC H26 H26 H 0 1 N N N 20.586 64.617 13.813 2.199  0.945  -3.824 H26 KOC 78 
KOC H27 H27 H 0 1 N N N 16.098 64.453 20.653 -5.081 0.834  2.565  H27 KOC 79 
KOC H28 H28 H 0 1 N N N 16.317 63.391 22.085 -4.101 2.169  1.912  H28 KOC 80 
KOC H29 H29 H 0 1 N N N 16.872 65.379 23.455 -6.069 2.864  0.512  H29 KOC 81 
KOC H30 H30 H 0 1 N N N 16.603 66.428 22.021 -7.036 1.598  1.307  H30 KOC 82 
KOC H31 H31 H 0 1 N N N 14.846 66.935 25.935 -9.238 3.259  1.580  H31 KOC 83 
KOC H32 H32 H 0 1 N N N 15.947 65.608 25.434 -8.903 4.980  1.276  H32 KOC 84 
KOC H33 H33 H 0 1 N N N 16.123 67.242 24.710 -7.897 3.729  0.508  H33 KOC 85 
KOC H34 H34 H 0 1 N N N 12.985 66.872 25.316 -7.030 4.807  4.431  H34 KOC 86 
KOC H35 H35 H 0 1 N N N 12.676 67.124 23.565 -7.811 5.957  3.319  H35 KOC 87 
KOC H36 H36 H 0 1 N N N 12.484 65.490 24.284 -8.778 4.692  4.114  H36 KOC 88 
KOC H37 H37 H 0 1 N N N 18.698 61.639 21.224 -6.092 -0.582 2.312  H37 KOC 89 
KOC H38 H38 H 0 1 N N N 20.178 60.428 22.768 -7.110 -2.803 2.042  H38 KOC 90 
KOC H39 H39 H 0 1 N N N 19.265 65.219 23.501 -4.369 -0.887 -1.592 H39 KOC 91 
KOC H40 H40 H 0 1 N N N 24.041 59.393 26.163 -8.656 -7.531 0.201  H40 KOC 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KOC O2  P   DOUB N N 1  
KOC C9  C8  SING N N 2  
KOC O   P   SING N N 3  
KOC P   C   SING N N 4  
KOC P   O1  SING N N 5  
KOC C8  C11 SING N N 6  
KOC C8  C10 SING N N 7  
KOC C8  C7  SING N N 8  
KOC F   C   SING N N 9  
KOC C2  C1  DOUB Y N 10 
KOC C2  C3  SING Y N 11 
KOC C1  C   SING N N 12 
KOC C1  C34 SING Y N 13 
KOC C   F1  SING N N 14 
KOC C32 C3  SING Y N 15 
KOC C32 C5  DOUB Y N 16 
KOC C3  C4  DOUB Y N 17 
KOC N   C7  SING N N 18 
KOC N   C6  SING N N 19 
KOC C34 C33 DOUB Y N 20 
KOC C5  C6  SING N N 21 
KOC C5  S   SING Y N 22 
KOC C4  C33 SING Y N 23 
KOC C4  S   SING Y N 24 
KOC C7  C12 SING N N 25 
KOC C6  O6  DOUB N N 26 
KOC C12 O5  DOUB N N 27 
KOC C12 N1  SING N N 28 
KOC C13 N1  SING N N 29 
KOC C13 C14 SING N N 30 
KOC N1  C16 SING N N 31 
KOC O4  C17 DOUB N N 32 
KOC C14 C15 SING N N 33 
KOC C16 C17 SING N N 34 
KOC C16 C15 SING N N 35 
KOC C17 N2  SING N N 36 
KOC N2  C27 SING N N 37 
KOC N2  C18 SING N N 38 
KOC C27 C28 SING N N 39 
KOC O3  C29 DOUB N N 40 
KOC C26 C18 DOUB Y N 41 
KOC C26 C25 SING Y N 42 
KOC C18 C19 SING Y N 43 
KOC C28 C29 SING N N 44 
KOC C29 N4  SING N N 45 
KOC C25 C21 DOUB Y N 46 
KOC C19 C20 DOUB Y N 47 
KOC C21 C20 SING Y N 48 
KOC C21 C22 SING N N 49 
KOC N4  C30 SING N N 50 
KOC N4  C31 SING N N 51 
KOC S1  C22 SING Y N 52 
KOC S1  C24 SING Y N 53 
KOC C22 N3  DOUB Y N 54 
KOC C24 C23 DOUB Y N 55 
KOC N3  C23 SING Y N 56 
KOC C10 H1  SING N N 57 
KOC C10 H2  SING N N 58 
KOC C10 H3  SING N N 59 
KOC C13 H4  SING N N 60 
KOC C13 H5  SING N N 61 
KOC C14 H6  SING N N 62 
KOC C14 H7  SING N N 63 
KOC C15 H8  SING N N 64 
KOC C15 H9  SING N N 65 
KOC C16 H10 SING N N 66 
KOC C20 H11 SING N N 67 
KOC C23 H12 SING N N 68 
KOC C32 H13 SING N N 69 
KOC C2  H14 SING N N 70 
KOC C33 H15 SING N N 71 
KOC C34 H16 SING N N 72 
KOC O1  H17 SING N N 73 
KOC O   H18 SING N N 74 
KOC N   H19 SING N N 75 
KOC C7  H20 SING N N 76 
KOC C11 H21 SING N N 77 
KOC C11 H22 SING N N 78 
KOC C11 H23 SING N N 79 
KOC C9  H24 SING N N 80 
KOC C9  H25 SING N N 81 
KOC C9  H26 SING N N 82 
KOC C27 H27 SING N N 83 
KOC C27 H28 SING N N 84 
KOC C28 H29 SING N N 85 
KOC C28 H30 SING N N 86 
KOC C31 H31 SING N N 87 
KOC C31 H32 SING N N 88 
KOC C31 H33 SING N N 89 
KOC C30 H34 SING N N 90 
KOC C30 H35 SING N N 91 
KOC C30 H36 SING N N 92 
KOC C26 H37 SING N N 93 
KOC C25 H38 SING N N 94 
KOC C19 H39 SING N N 95 
KOC C24 H40 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KOC SMILES           ACDLabs              12.01 "O=P(O)(O)C(F)(F)c1cc2cc(sc2cc1)C(=O)NC(C(=O)N1CCCC1C(=O)N(CCC(=O)N(C)C)c1ccc(cc1)c1nccs1)C(C)(C)C"                                                                                                                                                                            
KOC InChI            InChI                1.03  "InChI=1S/C35H40F2N5O7PS2/c1-34(2,3)29(39-30(44)27-20-22-19-23(10-13-26(22)52-27)35(36,37)50(47,48)49)33(46)42-16-6-7-25(42)32(45)41(17-14-28(43)40(4)5)24-11-8-21(9-12-24)31-38-15-18-51-31/h8-13,15,18-20,25,29H,6-7,14,16-17H2,1-5H3,(H,39,44)(H2,47,48,49)/t25-,29+/m0/s1" 
KOC InChIKey         InChI                1.03  KJJHAYNANYPNEE-ABYGYWHVSA-N                                                                                                                                                                                                                                                    
KOC SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)CCN(C(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)c2sc3ccc(cc3c2)C(F)(F)[P](O)(O)=O)C(C)(C)C)c4ccc(cc4)c5sccn5"                                                                                                                                                                
KOC SMILES           CACTVS               3.385 "CN(C)C(=O)CCN(C(=O)[CH]1CCCN1C(=O)[CH](NC(=O)c2sc3ccc(cc3c2)C(F)(F)[P](O)(O)=O)C(C)(C)C)c4ccc(cc4)c5sccn5"                                                                                                                                                                    
KOC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N1CCC[C@H]1C(=O)N(CCC(=O)N(C)C)c2ccc(cc2)c3nccs3)NC(=O)c4cc5cc(ccc5s4)C(F)(F)P(=O)(O)O"                                                                                                                                                                   
KOC SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)N1CCCC1C(=O)N(CCC(=O)N(C)C)c2ccc(cc2)c3nccs3)NC(=O)c4cc5cc(ccc5s4)C(F)(F)P(=O)(O)O"                                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KOC "SYSTEMATIC NAME" ACDLabs              12.01 "N-{5-[difluoro(phosphono)methyl]-1-benzothiophene-2-carbonyl}-3-methyl-L-valyl-L-prolyl-N,N-dimethyl-N~3~-[4-(1,3-thiazol-2-yl)phenyl]-beta-alaninamide"                                                                                     
KOC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[2-[[(2~{S})-1-[(2~{S})-2-[[3-(dimethylamino)-3-oxidanylidene-propyl]-[4-(1,3-thiazol-2-yl)phenyl]carbamoyl]pyrrolidin-1-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamoyl]-1-benzothiophen-5-yl]-bis(fluoranyl)methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KOC "Create component" 2022-02-08 RCSB 
KOC "Initial release"  2023-02-15 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      KOC 
_pdbx_chem_comp_synonyms.name         AK2305 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
