data_KIC
# 
_chem_comp.id                                    KIC 
_chem_comp.name                                  "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H35 N13 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        697.659 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KIC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KIC N1  N1  N 0 1 N N N 16.317 6.923  12.559 3.279  3.561  -0.889 N1  KIC 1  
KIC C7  C1  C 0 1 N N S 18.314 7.940  15.707 2.006  0.292  -2.386 C7  KIC 2  
KIC C8  C2  C 0 1 Y N N 18.484 11.336 12.841 3.968  -1.667 0.770  C8  KIC 3  
KIC N2  N2  N 0 1 Y N N 19.486 10.549 13.380 4.512  -1.561 -0.486 N2  KIC 4  
KIC C9  C3  C 0 1 Y N N 20.316 12.302 12.327 5.558  -3.147 0.668  C9  KIC 5  
KIC O1  O1  O 0 1 N N N 18.777 8.293  13.409 3.872  0.690  -0.982 O1  KIC 6  
KIC C1  C4  C 0 1 N N N 15.959 5.244  10.872 3.876  5.742  0.113  C1  KIC 7  
KIC O5  O2  O 0 1 N N N 17.760 10.323 7.881  -5.357 2.638  -0.643 O5  KIC 8  
KIC C5  C5  C 0 1 N N R 19.369 9.330  14.172 4.095  -0.629 -1.537 C5  KIC 9  
KIC C6  C6  C 0 1 N N R 18.548 9.424  15.455 2.726  -1.048 -2.118 C6  KIC 10 
KIC N3  N3  N 0 1 Y N N 18.935 12.409 12.209 4.594  -2.603 1.443  N3  KIC 11 
KIC C4  C7  C 0 1 N N R 18.026 7.425  14.297 3.022  1.365  -1.934 C4  KIC 12 
KIC O4  O3  O 0 1 N N N 15.829 8.420  9.901  -3.113 0.140  0.484  O4  KIC 13 
KIC C3  C8  C 0 1 N N N 16.566 7.473  13.885 2.301  2.538  -1.267 C3  KIC 14 
KIC O3  O4  O 0 1 N N N 19.505 7.346  16.204 1.714  0.435  -3.778 O3  KIC 15 
KIC C2  C9  C 0 1 N N N 16.223 5.617  12.312 2.870  4.690  -0.276 C2  KIC 16 
KIC N4  N4  N 0 1 N N N 21.186 14.214 11.114 6.601  -4.845 2.051  N4  KIC 17 
KIC N   N5  N 0 1 N N N 14.510 3.317  11.219 4.137  7.938  1.166  N   KIC 18 
KIC C   C10 C 0 1 N N N 15.808 3.729  10.678 3.156  6.912  0.786  C   KIC 19 
KIC O   O5  O 0 1 N N N 16.349 4.759  13.183 1.693  4.859  -0.039 O   KIC 20 
KIC C10 C11 C 0 1 Y N N 21.367 13.098 11.830 6.515  -4.162 0.851  C10 KIC 21 
KIC C11 C12 C 0 1 Y N N 22.821 11.577 12.789 7.258  -3.803 -1.305 C11 KIC 22 
KIC C12 C13 C 0 1 Y N N 20.672 11.166 13.040 5.519  -2.489 -0.575 C12 KIC 23 
KIC C13 C14 C 0 1 N N N 17.120 10.979 12.923 2.886  -0.873 1.271  C13 KIC 24 
KIC C14 C15 C 0 1 N N N 15.938 10.814 12.920 1.999  -0.223 1.681  C14 KIC 25 
KIC C15 C16 C 0 1 N N N 14.505 10.484 12.970 0.888  0.593  2.196  C15 KIC 26 
KIC C16 C17 C 0 1 N N N 14.012 9.847  10.624 -1.374 1.320  1.727  C16 KIC 27 
KIC C17 C18 C 0 1 N N R 15.359 9.780  9.923  -2.401 1.392  0.596  C17 KIC 28 
KIC C18 C19 C 0 1 N N R 16.862 8.358  8.933  -4.334 0.458  -0.219 C18 KIC 29 
KIC C19 C20 C 0 1 N N R 16.613 9.477  7.912  -4.791 1.809  0.375  C19 KIC 30 
KIC C20 C21 C 0 1 N N S 15.357 10.179 8.454  -3.490 2.437  0.923  C20 KIC 31 
KIC C21 C22 C 0 1 Y N N 15.887 6.367  7.683  -5.395 -1.422 1.087  C21 KIC 32 
KIC C22 C23 C 0 1 Y N N 17.552 5.050  7.650  -7.095 -1.925 -0.162 C22 KIC 33 
KIC C23 C24 C 0 1 Y N N 17.965 6.176  8.339  -6.415 -0.867 -0.788 C23 KIC 34 
KIC C24 C25 C 0 1 Y N N 20.003 5.383  8.599  -7.969 -0.891 -2.480 C24 KIC 35 
KIC C25 C26 C 0 1 Y N N 18.514 4.041  7.448  -8.248 -2.432 -0.784 C25 KIC 36 
KIC C26 C27 C 0 1 N N N 12.950 8.676  12.537 -0.761 -1.002 1.423  C26 KIC 37 
KIC C27 C28 C 0 1 N N N 11.610 9.359  12.691 -1.250 -1.301 2.817  C27 KIC 38 
KIC N10 N6  N 0 1 Y N N 19.177 6.399  8.853  -6.883 -0.386 -1.934 N10 KIC 39 
KIC N11 N7  N 0 1 Y N N 19.754 4.247  7.945  -8.641 -1.887 -1.931 N11 KIC 40 
KIC N12 N8  N 0 1 N N N 18.281 2.917  6.765  -8.959 -3.474 -0.216 N12 KIC 41 
KIC N5  N9  N 0 1 Y N N 22.630 12.697 12.086 7.333  -4.450 -0.156 N5  KIC 42 
KIC N6  N10 N 0 1 Y N N 21.911 10.748 13.307 6.380  -2.847 -1.522 N6  KIC 43 
KIC N7  N11 N 0 1 N N N 14.098 9.436  12.035 -0.299 0.390  1.355  N7  KIC 44 
KIC N8  N12 N 0 1 Y N N 16.887 7.025  8.351  -5.345 -0.575 0.020  N8  KIC 45 
KIC N9  N13 N 0 1 Y N N 16.230 5.178  7.249  -6.423 -2.213 0.978  N9  KIC 46 
KIC O2  O6  O 0 1 N N N 19.288 10.022 16.511 2.901  -1.775 -3.336 O2  KIC 47 
KIC O6  O7  O 0 1 N N N 15.479 11.583 8.291  -3.213 3.673  0.261  O6  KIC 48 
KIC O7  O8  O 0 1 N N N 11.600 10.665 12.552 -1.157 -0.464 3.683  O7  KIC 49 
KIC O8  O9  O 0 1 N N N 10.611 8.714  12.937 -1.789 -2.499 3.097  O8  KIC 50 
KIC H1  H1  H 0 1 N N N 16.211 7.559  11.794 4.221  3.424  -1.075 H1  KIC 51 
KIC H2  H2  H 0 1 N N N 17.451 7.781  16.370 1.092  0.359  -1.797 H2  KIC 52 
KIC H3  H3  H 0 1 N N N 16.799 5.597  10.256 4.600  5.314  0.806  H3  KIC 53 
KIC H4  H4  H 0 1 N N N 15.032 5.736  10.544 4.393  6.098  -0.778 H4  KIC 54 
KIC H5  H5  H 0 1 N N N 18.502 9.839  7.539  -5.606 3.521  -0.338 H5  KIC 55 
KIC H6  H6  H 0 1 N N N 20.383 9.015  14.460 4.846  -0.586 -2.326 H6  KIC 56 
KIC H7  H7  H 0 1 N N N 17.595 9.942  15.269 2.170  -1.643 -1.394 H7  KIC 57 
KIC H8  H8  H 0 1 N N N 18.391 6.391  14.212 3.607  1.713  -2.786 H8  KIC 58 
KIC H9  H9  H 0 1 N N N 16.236 8.522  13.894 1.780  2.186  -0.377 H9  KIC 59 
KIC H10 H10 H 0 1 N N N 15.979 6.898  14.616 1.580  2.965  -1.964 H10 KIC 60 
KIC H11 H11 H 0 1 N N N 19.679 7.670  17.080 1.103  -0.232 -4.122 H11 KIC 61 
KIC H12 H12 H 0 1 N N N 22.075 14.599 10.866 7.265  -5.543 2.165  H12 KIC 62 
KIC H13 H13 H 0 1 N N N 20.673 13.997 10.283 5.998  -4.626 2.778  H13 KIC 63 
KIC H14 H14 H 0 1 N N N 14.397 2.331  11.100 3.685  8.722  1.613  H14 KIC 64 
KIC H15 H15 H 0 1 N N N 14.468 3.542  12.192 4.856  7.549  1.757  H15 KIC 65 
KIC H17 H17 H 0 1 N N N 15.857 3.486  9.606  2.432  7.340  0.093  H17 KIC 66 
KIC H18 H18 H 0 1 N N N 16.615 3.205  11.211 2.639  6.556  1.677  H18 KIC 67 
KIC H19 H19 H 0 1 N N N 23.852 11.305 12.962 7.944  -4.069 -2.096 H19 KIC 68 
KIC H20 H20 H 0 1 N N N 13.933 11.394 12.738 0.662  0.296  3.220  H20 KIC 69 
KIC H21 H21 H 0 1 N N N 14.264 10.149 13.990 1.170  1.646  2.178  H21 KIC 70 
KIC H22 H22 H 0 1 N N N 13.640 10.881 10.578 -0.953 2.311  1.899  H22 KIC 71 
KIC H23 H23 H 0 1 N N N 13.308 9.181  10.103 -1.859 0.969  2.637  H23 KIC 72 
KIC H24 H24 H 0 1 N N N 16.074 10.417 10.464 -1.911 1.635  -0.347 H24 KIC 73 
KIC H25 H25 H 0 1 N N N 17.830 8.553  9.418  -4.141 0.559  -1.288 H25 KIC 74 
KIC H26 H26 H 0 1 N N N 16.403 9.043  6.923  -5.508 1.652  1.180  H26 KIC 75 
KIC H27 H27 H 0 1 N N N 14.460 9.786  7.954  -3.563 2.588  2.000  H27 KIC 76 
KIC H28 H28 H 0 1 N N N 14.905 6.790  7.528  -4.685 -1.437 1.901  H28 KIC 77 
KIC H29 H29 H 0 1 N N N 21.010 5.495  8.973  -8.324 -0.477 -3.412 H29 KIC 78 
KIC H30 H30 H 0 1 N N N 12.800 7.831  11.848 0.063  -1.671 1.176  H30 KIC 79 
KIC H31 H31 H 0 1 N N N 13.230 8.294  13.530 -1.575 -1.151 0.714  H31 KIC 80 
KIC H32 H32 H 0 1 N N N 19.117 2.370  6.727  -8.663 -3.864 0.622  H32 KIC 81 
KIC H33 H33 H 0 1 N N N 17.561 2.394  7.220  -9.755 -3.815 -0.654 H33 KIC 82 
KIC H35 H35 H 0 1 N N N 18.749 10.065 17.292 2.073  -2.062 -3.745 H35 KIC 83 
KIC H36 H36 H 0 1 N N N 14.700 12.010 8.628  -3.896 4.347  0.384  H36 KIC 84 
KIC H37 H37 H 0 1 N N N 9.865  9.298  13.006 -2.088 -2.644 4.005  H37 KIC 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KIC N12 C25 SING N N 1  
KIC N9  C22 SING Y N 2  
KIC N9  C21 DOUB Y N 3  
KIC C25 C22 DOUB Y N 4  
KIC C25 N11 SING Y N 5  
KIC C22 C23 SING Y N 6  
KIC C21 N8  SING Y N 7  
KIC O5  C19 SING N N 8  
KIC C19 C20 SING N N 9  
KIC C19 C18 SING N N 10 
KIC N11 C24 DOUB Y N 11 
KIC O6  C20 SING N N 12 
KIC C23 N8  SING Y N 13 
KIC C23 N10 DOUB Y N 14 
KIC N8  C18 SING N N 15 
KIC C20 C17 SING N N 16 
KIC C24 N10 SING Y N 17 
KIC C18 O4  SING N N 18 
KIC O4  C17 SING N N 19 
KIC C17 C16 SING N N 20 
KIC C16 N7  SING N N 21 
KIC C   C1  SING N N 22 
KIC C   N   SING N N 23 
KIC C1  C2  SING N N 24 
KIC N4  C10 SING N N 25 
KIC C10 N5  DOUB Y N 26 
KIC C10 C9  SING Y N 27 
KIC N7  C26 SING N N 28 
KIC N7  C15 SING N N 29 
KIC N5  C11 SING Y N 30 
KIC N3  C9  SING Y N 31 
KIC N3  C8  DOUB Y N 32 
KIC C2  N1  SING N N 33 
KIC C2  O   DOUB N N 34 
KIC C9  C12 DOUB Y N 35 
KIC C26 C27 SING N N 36 
KIC O7  C27 DOUB N N 37 
KIC N1  C3  SING N N 38 
KIC C27 O8  SING N N 39 
KIC C11 N6  DOUB Y N 40 
KIC C8  C13 SING N N 41 
KIC C8  N2  SING Y N 42 
KIC C14 C13 TRIP N N 43 
KIC C14 C15 SING N N 44 
KIC C12 N6  SING Y N 45 
KIC C12 N2  SING Y N 46 
KIC N2  C5  SING N N 47 
KIC O1  C5  SING N N 48 
KIC O1  C4  SING N N 49 
KIC C3  C4  SING N N 50 
KIC C5  C6  SING N N 51 
KIC C4  C7  SING N N 52 
KIC C6  C7  SING N N 53 
KIC C6  O2  SING N N 54 
KIC C7  O3  SING N N 55 
KIC N1  H1  SING N N 56 
KIC C7  H2  SING N N 57 
KIC C1  H3  SING N N 58 
KIC C1  H4  SING N N 59 
KIC O5  H5  SING N N 60 
KIC C5  H6  SING N N 61 
KIC C6  H7  SING N N 62 
KIC C4  H8  SING N N 63 
KIC C3  H9  SING N N 64 
KIC C3  H10 SING N N 65 
KIC O3  H11 SING N N 66 
KIC N4  H12 SING N N 67 
KIC N4  H13 SING N N 68 
KIC N   H14 SING N N 69 
KIC N   H15 SING N N 70 
KIC C   H17 SING N N 71 
KIC C   H18 SING N N 72 
KIC C11 H19 SING N N 73 
KIC C15 H20 SING N N 74 
KIC C15 H21 SING N N 75 
KIC C16 H22 SING N N 76 
KIC C16 H23 SING N N 77 
KIC C17 H24 SING N N 78 
KIC C18 H25 SING N N 79 
KIC C19 H26 SING N N 80 
KIC C20 H27 SING N N 81 
KIC C21 H28 SING N N 82 
KIC C24 H29 SING N N 83 
KIC C26 H30 SING N N 84 
KIC C26 H31 SING N N 85 
KIC N12 H32 SING N N 86 
KIC N12 H33 SING N N 87 
KIC O2  H35 SING N N 88 
KIC O6  H36 SING N N 89 
KIC O8  H37 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KIC InChI            InChI                1.06  "InChI=1S/C28H35N13O9/c29-4-3-15(42)32-6-12-19(45)22(48)28(49-12)41-14(38-18-24(31)34-10-36-26(18)41)2-1-5-39(8-16(43)44)7-13-20(46)21(47)27(50-13)40-11-37-17-23(30)33-9-35-25(17)40/h9-13,19-22,27-28,45-48H,3-8,29H2,(H,32,42)(H,43,44)(H2,30,33,35)(H2,31,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" 
KIC InChIKey         InChI                1.06  MESAVOLQOCRHDN-QJYUSYPVSA-N                                                                                                                                                                                                                                                                                  
KIC SMILES_CANONICAL CACTVS               3.385 "NCCC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                    
KIC SMILES           CACTVS               3.385 "NCCC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                              
KIC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CCN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                            
KIC SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CCN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           KIC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KIC "Create component"  2022-05-25 PDBE 
KIC "Modify descriptor" 2022-08-22 RCSB 
KIC "Initial release"   2023-01-11 RCSB 
# 
