data_JKC
# 
_chem_comp.id                                    JKC 
_chem_comp.name                                  "(2S)-2-azanyl-5-(phenylmethoxycarbonylamino)pentanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H18 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-18 
_chem_comp.pdbx_modified_date                    2022-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        266.293 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Y4K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JKC C7  C1  C 0 1 Y N N 9.700  5.520  -0.290 -5.233 -0.534 1.083  C7  JKC 1  
JKC C6  C2  C 0 1 Y N N 10.400 6.540  0.390  -6.391 0.124  1.455  C6  JKC 2  
JKC C5  C3  C 0 1 Y N N 11.810 6.540  0.400  -6.960 1.055  0.606  C5  JKC 3  
JKC C4  C4  C 0 1 Y N N 12.540 5.540  -0.280 -6.371 1.329  -0.614 C4  JKC 4  
JKC C3  C5  C 0 1 Y N N 11.850 4.520  -0.970 -5.214 0.671  -0.986 C3  JKC 5  
JKC C2  C6  C 0 1 Y N N 10.430 4.520  -0.970 -4.641 -0.256 -0.135 C2  JKC 6  
JKC C1  C7  C 0 1 N N N 9.740  3.520  -1.680 -3.379 -0.973 -0.541 C1  JKC 7  
JKC O2  O1  O 0 1 N N N 9.690  2.290  -0.940 -2.226 -0.212 -0.094 O2  JKC 8  
JKC CZ  C8  C 0 1 N N N 8.590  2.050  -0.150 -1.012 -0.720 -0.379 CZ  JKC 9  
JKC O1  O2  O 0 1 N N N 7.760  2.930  0.100  -0.919 -1.769 -0.984 O1  JKC 10 
JKC NE  N1  N 0 1 N N N 8.440  0.820  0.370  0.100  -0.063 0.007  NE  JKC 11 
JKC CD  C9  C 0 1 N N N 7.320  0.430  1.260  1.421  -0.615 -0.303 CD  JKC 12 
JKC CG  C10 C 0 1 N N N 6.410  -0.610 0.600  2.505  0.318  0.242  CG  JKC 13 
JKC CB  C11 C 0 1 N N N 5.700  -0.010 -0.620 3.885  -0.259 -0.082 CB  JKC 14 
JKC CA  C12 C 0 1 N N S 4.630  -0.930 -1.240 4.968  0.674  0.463  CA  JKC 15 
JKC C   C13 C 0 1 N N N 5.310  -2.150 -1.880 6.322  0.048  0.254  C   JKC 16 
JKC O   O3  O 0 1 N N N 5.750  -2.000 -3.030 7.013  0.399  -0.674 O   JKC 17 
JKC OXT O4  O 0 1 N Y N 5.490  -3.150 -1.150 6.761  -0.899 1.097  OXT JKC 18 
JKC N   N2  N 0 1 N N N 3.550  -1.370 -0.340 4.908  1.960  -0.245 N   JKC 19 
JKC H1  H1  H 0 1 N N N 8.620  5.504  -0.290 -4.789 -1.261 1.746  H1  JKC 20 
JKC H2  H2  H 0 1 N N N 9.856  7.320  0.902  -6.851 -0.090 2.408  H2  JKC 21 
JKC H3  H3  H 0 1 N N N 12.339 7.315  0.935  -7.864 1.569  0.896  H3  JKC 22 
JKC H4  H4  H 0 1 N N N 13.620 5.556  -0.272 -6.816 2.056  -1.278 H4  JKC 23 
JKC H5  H5  H 0 1 N N N 12.396 3.748  -1.492 -4.751 0.888  -1.938 H5  JKC 24 
JKC H6  H6  H 0 1 N N N 8.713  3.863  -1.874 -3.361 -1.962 -0.084 H6  JKC 25 
JKC H7  H7  H 0 1 N N N 10.253 3.341  -2.636 -3.351 -1.073 -1.626 H7  JKC 26 
JKC H8  H8  H 0 1 N N N 9.124  0.127  0.143  0.026  0.775  0.489  H8  JKC 27 
JKC H9  H9  H 0 1 N N N 7.732  0.006  2.187  1.522  -1.597 0.158  H9  JKC 28 
JKC H10 H10 H 0 1 N N N 6.726  1.324  1.498  1.532  -0.708 -1.384 H10 JKC 29 
JKC H11 H11 H 0 1 N N N 5.657  -0.945 1.328  2.404  1.300  -0.220 H11 JKC 30 
JKC H12 H12 H 0 1 N N N 7.017  -1.469 0.279  2.394  0.411  1.322  H12 JKC 31 
JKC H13 H13 H 0 1 N N N 6.457  0.207  -1.388 3.985  -1.241 0.380  H13 JKC 32 
JKC H14 H14 H 0 1 N N N 5.213  0.927  -0.311 3.995  -0.352 -1.162 H14 JKC 33 
JKC H15 H15 H 0 1 N N N 4.164  -0.363 -2.059 4.804  0.838  1.528  H15 JKC 34 
JKC HXT H16 H 0 1 N Y N 6.021  -3.788 -1.612 7.636  -1.272 0.922  H16 JKC 35 
JKC H17 H17 H 0 1 N N N 3.113  -0.571 0.072  5.571  2.616  0.141  H17 JKC 36 
JKC H18 H18 H 0 1 N Y N 2.872  -1.889 -0.861 5.057  1.835  -1.235 H18 JKC 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JKC O   C   DOUB N N 1  
JKC C   CA  SING N N 2  
JKC C   OXT SING N N 3  
JKC C1  C2  SING N N 4  
JKC C1  O2  SING N N 5  
JKC CA  CB  SING N N 6  
JKC CA  N   SING N N 7  
JKC C3  C2  DOUB Y N 8  
JKC C3  C4  SING Y N 9  
JKC C2  C7  SING Y N 10 
JKC O2  CZ  SING N N 11 
JKC CB  CG  SING N N 12 
JKC C7  C6  DOUB Y N 13 
JKC C4  C5  DOUB Y N 14 
JKC CZ  O1  DOUB N N 15 
JKC CZ  NE  SING N N 16 
JKC NE  CD  SING N N 17 
JKC C6  C5  SING Y N 18 
JKC CG  CD  SING N N 19 
JKC C7  H1  SING N N 20 
JKC C6  H2  SING N N 21 
JKC C5  H3  SING N N 22 
JKC C4  H4  SING N N 23 
JKC C3  H5  SING N N 24 
JKC C1  H6  SING N N 25 
JKC C1  H7  SING N N 26 
JKC NE  H8  SING N N 27 
JKC CD  H9  SING N N 28 
JKC CD  H10 SING N N 29 
JKC CG  H11 SING N N 30 
JKC CG  H12 SING N N 31 
JKC CB  H13 SING N N 32 
JKC CB  H14 SING N N 33 
JKC CA  H15 SING N N 34 
JKC OXT HXT SING N N 35 
JKC N   H17 SING N N 36 
JKC N   H18 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JKC InChI            InChI                1.06  "InChI=1S/C13H18N2O4/c14-11(12(16)17)7-4-8-15-13(18)19-9-10-5-2-1-3-6-10/h1-3,5-6,11H,4,7-9,14H2,(H,15,18)(H,16,17)/t11-/m0/s1" 
JKC InChIKey         InChI                1.06  VULSXQYFUHKBAN-NSHDSACASA-N                                                                                                     
JKC SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCNC(=O)OCc1ccccc1)C(O)=O"                                                                                            
JKC SMILES           CACTVS               3.385 "N[CH](CCCNC(=O)OCc1ccccc1)C(O)=O"                                                                                              
JKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NCCC[C@@H](C(=O)O)N"                                                                                          
JKC SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NCCCC(C(=O)O)N"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           JKC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-5-(phenylmethoxycarbonylamino)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JKC "Create component" 2022-08-18 PDBJ 
JKC "Initial release"  2022-11-16 RCSB 
# 
