data_GMC
#

_chem_comp.id                                   GMC
_chem_comp.name                                 "(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H18 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6N-DIMETHYL-3'-DEOXY-AMINO-ADENOSINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-11-05
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       294.310
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GMC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GMC  C10     C10   C  0  1  N  N  N  82.701  53.366  51.737   0.020   0.280   5.715  C10     GMC   1  
GMC  N6      N6    N  0  1  N  N  N  81.580  54.143  52.259   0.730   0.618   4.475  N6      GMC   2  
GMC  C9      C9    C  0  1  N  N  N  80.449  53.444  52.861   1.996  -0.126   4.497  C9      GMC   3  
GMC  C6      C6    C  0  1  Y  N  N  81.643  55.538  52.155  -0.018   0.098   3.433  C6      GMC   4  
GMC  C5      C5    C  0  1  Y  N  N  80.582  56.457  52.631   0.395   0.259   2.100  C5      GMC   5  
GMC  C4      C4    C  0  1  Y  N  N  80.804  57.894  52.444  -0.403  -0.295   1.086  C4      GMC   6  
GMC  N3      N3    N  0  1  Y  N  N  81.949  58.289  51.849  -1.518  -0.937   1.421  N3      GMC   7  
GMC  C2      C2    C  0  1  Y  N  N  82.873  57.408  51.434  -1.869  -1.058   2.684  C2      GMC   8  
GMC  N1      N1    N  0  1  Y  N  N  82.730  56.084  51.588  -1.148  -0.559   3.671  N1      GMC   9  
GMC  N7      N7    N  0  1  Y  N  N  79.385  56.329  53.227   1.457   0.844   1.496  N7      GMC  10  
GMC  C8      C8    C  0  1  Y  N  N  78.893  57.575  53.412   1.359   0.695   0.207  C8      GMC  11  
GMC  N9      N9    N  0  1  Y  N  N  79.734  58.510  52.938   0.227  -0.001  -0.095  N9      GMC  12  
GMC  "C1'"   C1*   C  0  1  N  N  R  79.401  59.943  53.015  -0.231  -0.369  -1.437  "C1'"   GMC  13  
GMC  "O4'"   O4*   O  0  1  N  N  N  79.017  59.983  54.419   0.891  -0.480  -2.339  "O4'"   GMC  14  
GMC  "C4'"   C4*   C  0  1  N  N  S  77.809  60.727  54.563   0.331  -0.346  -3.663  "C4'"   GMC  15  
GMC  "C5'"   C5*   C  0  1  N  N  N  77.013  60.347  55.804   1.416   0.060  -4.662  "C5'"   GMC  16  
GMC  "O5'"   O5*   O  0  1  N  N  N  76.703  58.967  55.861   2.420  -0.954  -4.713  "O5'"   GMC  17  
GMC  "C2'"   C2*   C  0  1  N  N  R  78.370  60.791  52.288  -1.108   0.754  -2.032  "C2'"   GMC  18  
GMC  "O2'"   O2*   O  0  1  N  N  N  78.673  62.169  52.093  -2.496   0.452  -1.871  "O2'"   GMC  19  
GMC  "C3'"   C3*   C  0  1  N  N  S  77.170  60.502  53.199  -0.727   0.771  -3.532  "C3'"   GMC  20  
GMC  "N3'"   N3*   N  0  1  N  N  N  75.962  61.287  52.976  -1.899   0.469  -4.364  "N3'"   GMC  21  
GMC  H101    1H10  H  0  0  N  N  N  83.565  53.900  51.277   0.574   0.670   6.569  H101    GMC  22  
GMC  H102    2H10  H  0  0  N  N  N  82.310  52.621  51.005  -0.975   0.723   5.695  H102    GMC  23  
GMC  H103    3H10  H  0  0  N  N  N  83.082  52.699  52.546  -0.065  -0.802   5.802  H103    GMC  24  
GMC  HC1     1HC   H  0  1  N  N  N  79.593  54.037  53.259   2.562   0.091   3.592  HC1     GMC  25  
GMC  HC2     2HC   H  0  1  N  N  N  80.830  52.777  53.670   2.577   0.170   5.370  HC2     GMC  26  
GMC  HC3     3HC   H  0  1  N  N  N  80.058  52.699  52.129   1.788  -1.195   4.546  HC3     GMC  27  
GMC  H2      H2    H  0  1  N  N  N  83.786  57.789  50.947  -2.781  -1.586   2.921  H2      GMC  28  
GMC  H8      H8    H  0  1  N  N  N  77.924  57.796  53.891   2.069   1.068  -0.515  H8      GMC  29  
GMC  "H1'"   H1*   H  0  1  N  N  N  80.368  60.493  52.939  -0.785  -1.307  -1.404  "H1'"   GMC  30  
GMC  "H4'"   H4*   H  0  1  N  N  N  78.077  61.806  54.643  -0.138  -1.279  -3.973  "H4'"   GMC  31  
GMC  "H5'1"  1H5*  H  0  0  N  N  N  76.090  60.966  55.890   0.972   0.182  -5.650  "H5'1"  GMC  32  
GMC  "H5'2"  2H5*  H  0  0  N  N  N  77.539  60.675  56.730   1.866   1.001  -4.347  "H5'2"  GMC  33  
GMC  "H5'"   H5*   H  0  1  N  N  N  76.206  58.730  56.635   3.083  -0.659  -5.353  "H5'"   GMC  34  
GMC  "H2'"   H2*   H  0  1  N  N  N  78.174  60.330  51.292  -0.870   1.710  -1.567  "H2'"   GMC  35  
GMC  HA      HA    H  0  1  N  N  N  78.029  62.699  51.639  -2.674   0.455  -0.921  HA      GMC  36  
GMC  "H3'"   H3*   H  0  1  N  N  N  76.910  59.422  53.106  -0.301   1.735  -3.808  "H3'"   GMC  37  
GMC  "H3'1"  1H3*  H  0  0  N  N  N  75.164  61.095  53.582  -1.575   0.432  -5.319  "H3'1"  GMC  38  
GMC  "H3'2"  2H3*  H  0  0  N  N  N  75.676  61.201  52.001  -2.195  -0.463  -4.122  "H3'2"  GMC  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GMC  C10    N6      SING  N  N   1  
GMC  C10    H101    SING  N  N   2  
GMC  C10    H102    SING  N  N   3  
GMC  C10    H103    SING  N  N   4  
GMC  N6     C9      SING  N  N   5  
GMC  N6     C6      SING  N  N   6  
GMC  C9     HC1     SING  N  N   7  
GMC  C9     HC2     SING  N  N   8  
GMC  C9     HC3     SING  N  N   9  
GMC  C6     C5      DOUB  Y  N  10  
GMC  C6     N1      SING  Y  N  11  
GMC  C5     C4      SING  Y  N  12  
GMC  C5     N7      SING  Y  N  13  
GMC  C4     N3      DOUB  Y  N  14  
GMC  C4     N9      SING  Y  N  15  
GMC  N3     C2      SING  Y  N  16  
GMC  C2     N1      DOUB  Y  N  17  
GMC  C2     H2      SING  N  N  18  
GMC  N7     C8      DOUB  Y  N  19  
GMC  C8     N9      SING  Y  N  20  
GMC  C8     H8      SING  N  N  21  
GMC  N9     "C1'"   SING  N  N  22  
GMC  "C1'"  "O4'"   SING  N  N  23  
GMC  "C1'"  "C2'"   SING  N  N  24  
GMC  "C1'"  "H1'"   SING  N  N  25  
GMC  "O4'"  "C4'"   SING  N  N  26  
GMC  "C4'"  "C5'"   SING  N  N  27  
GMC  "C4'"  "C3'"   SING  N  N  28  
GMC  "C4'"  "H4'"   SING  N  N  29  
GMC  "C5'"  "O5'"   SING  N  N  30  
GMC  "C5'"  "H5'1"  SING  N  N  31  
GMC  "C5'"  "H5'2"  SING  N  N  32  
GMC  "O5'"  "H5'"   SING  N  N  33  
GMC  "C2'"  "O2'"   SING  N  N  34  
GMC  "C2'"  "C3'"   SING  N  N  35  
GMC  "C2'"  "H2'"   SING  N  N  36  
GMC  "O2'"  HA      SING  N  N  37  
GMC  "C3'"  "N3'"   SING  N  N  38  
GMC  "C3'"  "H3'"   SING  N  N  39  
GMC  "N3'"  "H3'1"  SING  N  N  40  
GMC  "N3'"  "H3'2"  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GMC  SMILES            ACDLabs               10.04  "n2c1c(ncnc1N(C)C)n(c2)C3OC(C(N)C3O)CO"  
GMC  SMILES_CANONICAL  CACTVS                3.341  "CN(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](N)[C@H]3O"  
GMC  SMILES            CACTVS                3.341  "CN(C)c1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](N)[CH]3O"  
GMC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)N)O"  
GMC  SMILES            "OpenEye OEToolkits"  1.5.0  "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)N)O"  
GMC  InChI             InChI                 1.03   "InChI=1S/C12H18N6O3/c1-17(2)10-8-11(15-4-14-10)18(5-16-8)12-9(20)7(13)6(3-19)21-12/h4-7,9,12,19-20H,3,13H2,1-2H3/t6-,7-,9-,12-/m1/s1"  
GMC  InChIKey          InChI                 1.03   RYSMHWILUNYBFW-GRIPGOBMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GMC  "SYSTEMATIC NAME"  ACDLabs               10.04  "3'-amino-3'-deoxy-N,N-dimethyladenosine"  
GMC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5S)-4-amino-2-(6-dimethylaminopurin-9-yl)-5-(hydroxymethyl)oxolan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GMC  "Create component"   2001-11-05  EBI   
GMC  "Modify descriptor"  2011-06-04  RCSB  
GMC  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GMC
_pdbx_chem_comp_synonyms.name        "6N-DIMETHYL-3'-DEOXY-AMINO-ADENOSINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
